Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 3.5e-230 801.6 509 100.0
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 6.1e-198 694.5 531 81.7
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 1.3e-195 686.8 461 90.7
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.0e-193 679.5 509 86.8
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.7e-192 676.4 509 86.8
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.5e-188 663.3 541 76.7
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.7e-179 633.3 512 82.4
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.4e-178 630.2 514 81.7
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.8e-178 629.8 459 86.1
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.5e-177 625.2 454 86.1
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 4.5e-177 625.2 529 80.0
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.2e-172 610.5 457 84.0
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 2.0e-172 609.8 509 83.3
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 8.2e-171 604.4 510 76.7
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 2.7e-169 599.4 522 73.6
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 6.1e-166 588.2 525 77.5
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 3.0e-165 585.9 467 81.2
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 5.2e-165 585.1 525 78.3
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 6.8e-165 584.7 468 75.6
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 6.8e-165 584.7 466 76.0
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 7.5e-164 581.3 467 73.9
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 4.1e-162 575.5 463 78.2
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 4.5e-161 572.0 465 78.1
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 4.5e-161 572.0 463 73.7
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 7.7e-161 571.2 466 74.5
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 1.3e-160 570.5 528 72.3
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 1.7e-160 570.1 465 73.8
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 2.3e-160 569.7 444 80.6
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 2.9e-160 569.3 469 74.8
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 1.1e-159 567.4 468 73.5
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 1.1e-159 567.4 468 77.4
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 1.5e-159 567.0 482 76.8
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 2.5e-159 566.2 429 78.1
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 9.5e-159 564.3 481 71.9
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 9.5e-159 564.3 512 75.6
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 1.2e-158 563.9 448 75.7
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 4.7e-158 562.0 529 71.5
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 6.1e-158 561.6 475 76.6
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 6.1e-158 561.6 470 75.7
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 1.0e-157 560.8 532 72.0
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 4.0e-157 558.9 468 75.6
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 3.7e-155 552.4 473 72.3
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 4.9e-155 552.0 459 76.9
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 8.3e-155 551.2 543 70.5
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 2.4e-154 549.7 517 71.4
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 5.4e-154 548.5 466 73.8
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 5.9e-153 545.0 468 75.0
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 7.8e-153 544.7 478 71.1
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 1.0e-152 544.3 466 73.8
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 1.3e-152 543.9 473 69.3
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 2.3e-152 543.1 436 80.5
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 2.9e-152 542.7 406 79.3
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 2.9e-152 542.7 474 70.7
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 3.8e-152 542.3 475 75.4
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 3.8e-152 542.3 430 80.7
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 6.6e-152 541.6 476 76.5
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.1e-151 540.8 473 74.6
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 2.5e-151 539.7 532 68.4
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.5e-151 539.7 458 76.0
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.5e-151 539.7 475 74.7
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 2.5e-151 539.7 471 76.2
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 9.5e-151 537.7 469 71.6
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 1.2e-150 537.3 466 74.5
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 1.2e-150 537.3 466 74.5
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 1.2e-150 537.3 436 78.7
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 1.2e-150 537.3 481 75.1
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 1.2e-150 537.3 473 68.9
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 1.6e-150 537.0 537 70.0
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.6e-150 537.0 483 63.8
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 2.1e-150 536.6 461 76.4
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 2.8e-150 536.2 460 76.5
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 3.6e-150 535.8 463 69.1
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 4.7e-150 535.4 471 74.9
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 4.7e-150 535.4 470 74.3
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 8.0e-150 534.6 466 73.6
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 1.4e-149 533.9 467 74.3
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 1.8e-149 533.5 426 75.6
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 6.8e-149 531.6 481 72.3
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 6.8e-149 531.6 466 71.7
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 8.9e-149 531.2 461 74.2
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 8.9e-149 531.2 394 85.8
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 1.2e-148 530.8 457 70.7
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 5.8e-148 528.5 457 74.4
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 5.8e-148 528.5 457 74.4
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 2.2e-147 526.6 427 75.2
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 8.3e-147 524.6 478 68.0
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 1.2e-145 520.8 464 68.8
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 1.2e-145 520.8 479 63.9
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 7.8e-145 518.1 468 68.8
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 3.0e-144 516.2 461 74.6
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 1.9e-143 513.5 510 74.1
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 2.8e-142 509.6 464 74.4
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 3.4e-140 502.7 533 57.4
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 2.2e-139 500.0 494 65.0
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 3.7e-139 499.2 430 70.5
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 7.0e-138 495.0 482 69.5
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 4.6e-137 492.3 536 65.1
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 6.6e-136 488.4 381 75.1
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 6.6e-136 488.4 473 71.0
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 8.1e-134 481.5 544 55.1
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 2.3e-133 479.9 402 72.1
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 9.9e-132 474.6 410 76.1
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 2.9e-131 473.0 469 65.2
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 1.2e-129 467.6 477 63.9
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 8.6e-128 461.5 363 70.5
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 7.3e-127 458.4 473 61.9
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 4.7e-126 455.7 466 62.7
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 2.9e-123 446.4 422 72.5
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 4.6e-121 439.1 466 66.7
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 3.0e-120 436.4 367 81.2
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 5.1e-120 435.6 400 73.2
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 1.5e-116 424.1 510 61.4
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 8.7e-112 408.3 418 68.2
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 8.7e-112 408.3 415 63.9
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 1.5e-111 407.5 464 58.2
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 3.1e-109 399.8 389 66.3
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 3.4e-108 396.4 474 52.1
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 2.8e-102 376.7 419 64.0
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 2.9e-99 366.7 340 67.6
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 2.1e-97 360.5 415 60.5
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 3.5e-97 359.8 329 66.9
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 1.1e-93 348.2 420 58.6
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 4.0e-93 346.3 406 70.2
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 3.9e-88 329.7 344 70.9
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 6.9e-85 318.9 601 44.4
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 1.4e-82 311.2 461 51.6
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 3.7e-78 296.6 279 56.3
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 6.9e-77 292.4 241 65.1
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 1.5e-76 291.2 281 79.0
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 4.2e-74 283.1 474 47.5
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.6e-63 247.3 152 79.6
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 5.9e-60 236.1 380 39.7
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.9e-59 233.8 141 80.1
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.5e-58 231.5 141 79.4
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 4.2e-58 229.9 141 78.7
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.2e-51 207.6 134 74.6
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.8e-51 206.8 134 74.6
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.5e-51 205.7 168 64.9
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 2.3e-48 197.6 135 74.1
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 7.5e-47 192.6 182 58.8
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.7e-44 182.6 171 58.5
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.7e-43 181.4 128 71.1
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 1.3e-35 155.2 95 84.2
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.0e-28 131.3 74 85.1
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 1.7e-27 128.3 95 66.3
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 4.7e-25 120.2 93 64.5
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 1.9e-21 108.2 460 25.2
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 1.9e-18 98.2 57 82.5
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 4.7e-17 93.6 208 31.2
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 8.9e-16 89.4 55 74.5
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 8.3e-14 82.8 71 67.6
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 7.1e-13 79.7 52 78.8
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 1.0e-11 75.9 127 41.7
QL02p028181 Quercus lobata HOM05D004623 ORTHO05D005100 8.1e-09 66.2 65 56.9
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 7.6e-07 59.7 68 51.5
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 9.9e-07 59.3 123 35.8
Lsat_1_v5_gn_9_31241 Lactuca sativa HOM05D000436 ORTHO05D000678 4.9e-06 57.0 35 68.6
MBI12_g13715_MAGBIO Magnolia biondii HOM05D051674 ORTHO05D243324 6.4e-06 56.6 57 50.9


User provided reference genes

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