Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 1.0e-97 360.1 191 100.0
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 6.4e-92 340.9 191 93.7
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 1.7e-89 332.8 189 93.1
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 3.9e-89 331.6 191 91.6
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 1.1e-88 330.1 180 96.1
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 3.3e-88 328.6 191 91.1
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 9.5e-88 327.0 191 90.6
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 3.2e-83 312.0 191 86.4
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 1.3e-81 306.6 192 86.5
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 2.3e-81 305.8 182 89.0
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 3.0e-81 305.4 192 85.4
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 2.5e-80 302.4 191 84.3
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 3.3e-80 302.0 191 83.8
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 5.6e-80 301.2 191 84.3
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 1.2e-79 300.1 191 82.7
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 2.1e-79 299.3 189 84.1
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 2.8e-79 298.9 192 83.3
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 8.1e-79 297.4 191 80.6
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 8.1e-79 297.4 189 82.0
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 1.1e-78 297.0 189 83.6
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 1.1e-78 297.0 191 81.7
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 1.4e-78 296.6 191 83.8
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 1.8e-78 296.2 191 80.1
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 6.9e-78 294.3 195 81.0
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.2e-77 293.5 185 83.2
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 1.5e-77 293.1 191 80.6
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 2.6e-77 292.4 187 82.9
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 1.3e-76 290.0 191 81.2
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 1.7e-76 289.7 185 82.2
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 3.8e-76 288.5 186 82.8
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 3.8e-76 288.5 189 82.5
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 8.4e-76 287.3 175 86.3
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 1.4e-75 286.6 199 77.4
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 1.4e-75 286.6 191 80.1
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 1.9e-75 286.2 189 82.0
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 5.4e-75 284.6 191 79.6
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 9.3e-75 283.9 190 78.4
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 7.8e-74 280.8 195 77.4
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 1.3e-73 280.0 192 79.2
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 6.6e-73 277.7 192 78.1
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 8.7e-73 277.3 189 79.4
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 1.5e-72 276.6 194 78.4
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 1.9e-72 276.2 191 79.1
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 1.9e-72 276.2 199 74.4
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 1.9e-72 276.2 199 74.4
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 3.3e-72 275.4 196 76.0
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 7.3e-72 274.2 163 84.0
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 9.6e-72 273.9 193 76.7
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 9.6e-72 273.9 189 78.3
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 9.6e-72 273.9 202 73.3
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 9.6e-72 273.9 171 83.0
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 3.6e-71 271.9 186 78.0
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 4.8e-71 271.6 192 77.1
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 4.8e-71 271.6 158 87.3
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 6.2e-71 271.2 193 76.2
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 8.1e-71 270.8 192 76.6
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 1.1e-70 270.4 189 78.8
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 1.1e-70 270.4 191 75.4
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 1.1e-70 270.4 189 76.2
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 1.1e-70 270.4 196 74.5
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 1.4e-70 270.0 192 76.6
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.8e-70 269.6 193 75.6
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 3.1e-70 268.9 191 78.0
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 3.1e-70 268.9 191 75.4
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 3.1e-70 268.9 203 71.9
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 3.1e-70 268.9 203 71.9
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.1e-70 268.9 203 71.9
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 4.0e-70 268.5 194 75.3
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 4.0e-70 268.5 155 88.4
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 4.0e-70 268.5 202 72.3
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 4.0e-70 268.5 163 82.8
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 6.9e-70 267.7 190 74.7
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 6.9e-70 267.7 190 74.2
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 6.9e-70 267.7 177 79.1
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 1.2e-69 266.9 209 71.3
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 1.2e-69 266.9 189 74.1
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 1.2e-69 266.9 195 75.9
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 1.5e-69 266.5 205 69.3
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 2.0e-69 266.2 197 74.6
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 5.8e-69 264.6 186 76.9
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 7.6e-69 264.2 202 70.8
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 4.9e-68 261.5 164 81.1
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 1.4e-67 260.0 199 70.9
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 1.9e-67 259.6 173 80.3
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 3.2e-67 258.8 190 72.6
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 4.2e-67 258.5 190 72.6
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 1.2e-66 256.9 201 69.7
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 2.7e-66 255.8 192 73.4
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 2.7e-66 255.8 191 73.3
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 2.7e-66 255.8 159 81.8
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 3.5e-66 255.4 187 70.6
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 4.6e-66 255.0 191 72.3
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 6.0e-66 254.6 171 78.4
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 1.0e-65 253.8 194 72.2
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 1.3e-65 253.4 189 73.0
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 1.3e-65 253.4 190 71.6
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 1.3e-65 253.4 183 75.4
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 1.8e-65 253.1 210 68.6
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 3.0e-65 252.3 189 72.5
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 3.9e-65 251.9 189 72.5
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 6.7e-65 251.1 190 70.0
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 1.5e-64 250.0 190 70.0
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 1.9e-64 249.6 190 69.5
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 1.9e-64 249.6 190 72.1
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 3.3e-64 248.8 167 76.6
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 3.3e-64 248.8 153 83.7
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 7.4e-64 247.7 196 70.4
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 6.2e-63 244.6 168 72.6
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 1.1e-62 243.8 159 78.0
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 1.1e-62 243.8 156 81.4
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.4e-62 243.4 192 72.4
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 3.1e-62 242.3 192 71.4
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 4.0e-62 241.9 167 78.4
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.5e-61 240.0 194 69.1
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 2.6e-61 239.2 194 70.1
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 1.3e-60 236.9 168 76.8
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 2.9e-60 235.7 258 56.2
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 1.9e-59 233.0 163 73.0
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 1.9e-59 233.0 190 68.9
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 2.4e-59 232.6 193 65.3
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 2.4e-59 232.6 198 64.6
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 3.2e-59 232.3 168 73.8
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 2.7e-58 229.2 168 72.6
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 1.3e-57 226.9 188 67.6
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 1.6e-55 219.9 181 66.3
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 1.5e-53 213.4 149 74.5
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 1.3e-52 210.3 191 63.4
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 3.8e-52 208.8 191 62.8
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 1.2e-50 203.8 153 73.2
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 1.3e-49 200.3 178 62.9
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 5.1e-49 198.4 135 78.5
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 1.3e-47 193.7 151 64.9
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 2.4e-46 189.5 234 53.4
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 4.5e-45 185.3 164 63.4
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 7.6e-45 184.5 110 81.8
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 7.2e-43 177.9 132 68.9
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 6.1e-42 174.9 104 80.8
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 7.9e-42 174.5 177 57.1
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.3e-41 173.7 188 58.0
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 1.3e-39 167.2 156 53.8
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 3.1e-38 162.5 160 50.0
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 5.9e-37 158.3 129 64.3
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.0e-36 157.5 132 66.7
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.7e-36 156.8 130 66.2
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.8e-36 155.6 130 66.2
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 6.5e-36 154.8 91 81.3
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.2e-35 152.5 130 66.9
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 7.9e-34 147.9 121 65.3
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 7.9e-34 147.9 82 86.6
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 1.4e-33 147.1 154 50.6
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 1.1e-32 144.1 159 46.5
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 2.6e-32 142.9 155 46.5
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 2.8e-31 139.4 127 57.5
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 4.7e-26 122.1 183 46.4
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.1e-24 117.5 119 60.5
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 5.5e-19 98.6 86 66.3
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 9.7e-16 87.8 58 70.7
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 2.7e-13 79.7 176 40.9
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 8.5e-12 74.7 79 64.6
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 3.6e-10 69.3 105 46.7
Cre12.g556450 Chlamydomonas reinhardtii HOM05D004525 ORTHO05D005295 1.4e-06 57.4 153 28.1
SpUn0008_0090 Schrenkiella parvula HOM05D000004 ORTHO05D027095 1.8e-06 57.0 43 65.1
RcHm_v2.0_Chr2g0098501 Rosa chinensis HOM05D004525 ORTHO05D005295 5.4e-06 55.5 89 42.7


User provided reference genes

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