Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G217700 Theobroma cacao HOM05D008304 ORTHO05D004056 7.3e-34 146.7 79 100.0
COL.COLO4_10829 Corchorus olitorius HOM05D008304 ORTHO05D004056 2.1e-25 118.6 80 83.8
Gohir.A12G241800 Gossypium hirsutum HOM05D008304 ORTHO05D004056 1.2e-20 102.8 80 77.5
Gorai.008G260200 Gossypium raimondii HOM05D008304 ORTHO05D004056 1.6e-20 102.4 80 77.5
Gohir.D12G243000 Gossypium hirsutum HOM05D008304 ORTHO05D004056 7.8e-20 100.1 80 76.2
Duzib205G1739 Durio zibethinus HOM05D008304 ORTHO05D004056 8.7e-19 96.7 80 75.0
Gohir.D09G182600 Gossypium hirsutum HOM05D008304 ORTHO05D004056 1.3e-17 92.8 80 70.0
Gorai.006G204900 Gossypium raimondii HOM05D008304 ORTHO05D004056 1.3e-17 92.8 80 70.0
Gohir.A09G187800 Gossypium hirsutum HOM05D008304 ORTHO05D004056 4.8e-17 90.9 80 68.8
Cpa.g.sc37.98 Carica papaya HOM05D008304 ORTHO05D004056 3.4e-15 84.7 79 63.3
Manes.01G055200 Manihot esculenta HOM05D008304 ORTHO05D004056 9.9e-15 83.2 79 60.8
QL02p027330 Quercus lobata HOM05D008304 ORTHO05D004056 3.8e-14 81.3 80 65.0
Dinv12896 Davidia involucrata HOM05D008304 ORTHO05D004056 6.4e-14 80.5 84 61.9
Ciclev10023139m.g Citrus clementina HOM05D008304 ORTHO05D004056 1.9e-13 79.0 82 64.6
MD14G1138600 Malus domestica HOM05D008304 ORTHO05D004056 1.9e-13 79.0 79 63.3
Prupe.5G132900 Prunus persica HOM05D008304 ORTHO05D004056 2.4e-13 78.6 79 62.0
Actinidia22217 Actinidia chinensis HOM05D008304 ORTHO05D004056 3.2e-13 78.2 86 60.5
GSVIVG01019681001 Vitis vinifera HOM05D008304 ORTHO05D004056 4.2e-13 77.8 82 63.4
Haze_09200 Corylus avellana HOM05D008304 ORTHO05D004056 5.4e-13 77.4 83 63.9
TAR629G3464 Trochodendron aralioides HOM05D008304 ORTHO05D004056 5.4e-13 77.4 79 65.8
Cfa011898 Carpinus fangiana HOM05D008304 ORTHO05D004056 4.6e-12 74.3 83 61.4
CSS0003921 Camellia sinensis var. sinensis HOM05D008304 ORTHO05D004056 6.0e-12 73.9 89 59.6
Dinv18759 Davidia involucrata HOM05D008304 ORTHO05D004056 6.0e-12 73.9 93 50.5
Oeu042857.1 Olea europaea HOM05D008304 ORTHO05D004056 6.0e-12 73.9 81 58.0
Atru.chr9.1863 Acer truncatum HOM05D008304 ORTHO05D004056 1.3e-11 72.8 80 61.2
MD06G1122200 Malus domestica HOM05D008304 ORTHO05D004056 3.0e-11 71.6 79 59.5
CANSAT21G0162 Cannabis sativa HOM05D008304 ORTHO05D004056 3.9e-11 71.2 79 62.0
CiPaw.11G110100 Carya illinoinensis HOM05D008304 ORTHO05D004056 3.9e-11 71.2 85 58.8
Nitab4.5_0002520g0050 Nicotiana tabacum HOM05D008304 ORTHO05D004056 6.7e-11 70.5 88 56.8
vmacro11488 Vaccinium macrocarpon HOM05D008304 ORTHO05D004056 8.7e-11 70.1 88 56.8
Gohir.A07G188200 Gossypium hirsutum HOM05D008304 ORTHO05D004056 1.1e-10 69.7 74 62.2
Sed0018210 Sechium edule HOM05D008304 ORTHO05D004056 4.3e-10 67.8 79 55.7
ClCG01G001410 Citrullus lanatus HOM05D008304 ORTHO05D004056 5.6e-10 67.4 86 53.5
Oeu015753.1 Olea europaea HOM05D008304 ORTHO05D004056 7.4e-10 67.0 80 58.8
Sabra16G0303400 Salix brachista HOM05D008304 ORTHO05D004056 1.3e-09 66.2 79 57.0
MBI12_g20132_MAGBIO Magnolia biondii HOM05D008304 ORTHO05D004056 1.6e-09 65.9 84 58.3
FvH4_5g10570 Fragaria vesca HOM05D008304 ORTHO05D004056 2.1e-09 65.5 79 57.0
FAN04G0709 Fragaria x ananassa HOM05D008304 ORTHO05D012179 2.1e-09 65.5 79 57.0
FAN13G2184 Fragaria x ananassa HOM05D008304 ORTHO05D012179 2.1e-09 65.5 79 57.0
FAN18G4101 Fragaria x ananassa HOM05D008304 ORTHO05D012179 2.1e-09 65.5 79 57.0
CDE04G3503 Ceratophyllum demersum HOM05D008304 ORTHO05D004056 3.7e-09 64.7 80 57.5
Potri.001G449633 Populus trichocarpa HOM05D008304 ORTHO05D004056 6.2e-09 63.9 80 61.2
Potri.011G151900 Populus trichocarpa HOM05D008304 ORTHO05D004056 8.1e-09 63.5 79 58.2
Peaxi162Scf00074g00131 Petunia axillaris HOM05D008304 ORTHO05D004056 1.8e-08 62.4 80 53.8
MBI04_g22063_MAGBIO Magnolia biondii HOM05D008304 ORTHO05D004056 3.1e-08 61.6 79 54.4
Migut.E00724 Erythranthe guttata HOM05D008304 ORTHO05D004056 5.3e-08 60.8 81 53.1
Sabra11G0136700 Salix brachista HOM05D008304 ORTHO05D004056 6.9e-08 60.5 84 51.2
Sabra11G0148600 Salix brachista HOM05D008304 ORTHO05D004056 6.9e-08 60.5 84 51.2
MBI07_g12792_MAGBIO Magnolia biondii HOM05D005953 ORTHO05D004056 9.0e-08 60.1 83 50.6
Carub.0007s1247 Capsella rubella HOM05D005953 ORTHO05D004056 1.2e-07 59.7 80 47.5
CAN.G567.106 Capsicum annuum HOM05D008304 ORTHO05D004056 1.2e-07 59.7 76 53.9
Medtr2g090340 Medicago truncatula HOM05D005953 ORTHO05D004056 1.5e-07 59.3 79 46.8
ATR0304G024 Amborella trichopoda HOM05D005953 ORTHO05D004056 2.0e-07 58.9 79 50.6
TAR626G0584 Trochodendron aralioides HOM05D005953 ORTHO05D004056 2.0e-07 58.9 80 50.0
CDE08G1618 Ceratophyllum demersum HOM05D005953 ORTHO05D004056 2.6e-07 58.5 89 48.3
Cc08_g16980 Coffea canephora HOM05D008304 ORTHO05D004056 2.6e-07 58.5 88 50.0
Eucgr.D01660 Eucalyptus grandis HOM05D008304 ORTHO05D004056 3.4e-07 58.2 82 50.0
MBI06_g06482_MAGBIO Magnolia biondii HOM05D005953 ORTHO05D004056 3.4e-07 58.2 82 52.4
Thecc.02G179300 Theobroma cacao HOM05D005953 ORTHO05D004056 3.4e-07 58.2 86 46.5
Hma1.2p1_1201F.1_g266560 Hydrangea macrophylla HOM05D005953 ORTHO05D004056 5.8e-07 57.4 79 49.4
Nn1g00437 Nelumbo nucifera HOM05D008304 ORTHO05D004056 7.6e-07 57.0 73 49.3
HanXRQChr07g0192251 Helianthus annuus HOM05D010428 ORTHO05D012179 9.9e-07 56.6 76 55.3
Sp7g26250 Schrenkiella parvula HOM05D005953 ORTHO05D004056 9.9e-07 56.6 80 50.0
HPP92_014633 Vanilla planifolia HOM05D005953 ORTHO05D004056 9.9e-07 56.6 79 53.2
Ciclev10017361m.g Citrus clementina HOM05D005953 ORTHO05D004056 1.3e-06 56.2 81 48.1
ECA233G3589 Erigeron canadensis HOM05D000020 ORTHO05D000543 1.3e-06 56.2 76 51.3
Nn1g06570 Nelumbo nucifera HOM05D005953 ORTHO05D004056 1.3e-06 56.2 90 45.6
Ca_01501_v3 Cicer arietinum L. HOM05D005953 ORTHO05D004056 1.7e-06 55.8 79 49.4
SalBow1G2785 Salvia bowleyana HOM05D005953 ORTHO05D004056 1.7e-06 55.8 79 50.6
Aqoxy1G02469 Aquilegia oxysepala HOM05D005953 ORTHO05D004056 2.2e-06 55.5 82 47.6
MELO3C018738.2 Cucumis melo HOM05D005953 ORTHO05D004056 2.2e-06 55.5 81 46.9
RcHm_v2.0_Chr7g0187581 Rosa chinensis HOM05D008304 ORTHO05D004056 2.2e-06 55.5 34 79.4
Atru.chr6.2998 Acer truncatum HOM05D005953 ORTHO05D004056 3.8e-06 54.7 80 46.2
Sed0013976 Sechium edule HOM05D005953 ORTHO05D004056 4.9e-06 54.3 83 48.2
CsaV3_5G001550 Cucumis sativus L. HOM05D008304 ORTHO05D004056 6.4e-06 53.9 81 50.6
Actinidia09855 Actinidia chinensis HOM05D005953 ORTHO05D004056 8.4e-06 53.5 79 50.6
arahy.Tifrunner.gnm1.ann1.RLZ54R Arachis hypogaea HOM05D005953 ORTHO05D004056 8.4e-06 53.5 79 45.6
BolC1t02424H Brassica oleracea HOM05D005953 ORTHO05D004056 8.4e-06 53.5 80 45.0
GSVIVG01020541001 Vitis vinifera HOM05D005953 ORTHO05D004056 8.4e-06 53.5 79 46.8


User provided reference genes

Program Settings