Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G217500 Theobroma cacao HOM05D008613 ORTHO05D006961 1.5e-40 169.1 85 100.0
Duzib205G1760 Durio zibethinus HOM05D008613 ORTHO05D006961 2.1e-31 138.7 85 83.5
Gohir.D03G084800 Gossypium hirsutum HOM05D008613 ORTHO05D006961 3.0e-25 118.2 87 71.3
Gohir.A02G099100 Gossypium hirsutum HOM05D008613 ORTHO05D006961 6.7e-25 117.1 87 70.1
Gorai.003G077900 Gossypium raimondii HOM05D008613 ORTHO05D006961 1.5e-24 115.9 87 69.0
Gorai.004G128500 Gossypium raimondii HOM05D008613 ORTHO05D006961 8.2e-23 110.2 85 72.9
Gohir.D08G121900 Gossypium hirsutum HOM05D008613 ORTHO05D006961 1.8e-22 109.0 85 71.8
Gohir.A08G109100 Gossypium hirsutum HOM05D008613 ORTHO05D006961 1.5e-21 105.9 85 70.6
QL02p027286 Quercus lobata HOM05D008613 ORTHO05D006961 1.6e-18 95.9 97 55.7
Sabra16G0303600 Salix brachista HOM05D008613 ORTHO05D006961 6.7e-17 90.5 91 56.0
Sabra16G0303700 Salix brachista HOM05D008613 ORTHO05D006961 8.7e-17 90.1 91 56.0
Sabra16G0303800 Salix brachista HOM05D008613 ORTHO05D006961 1.5e-16 89.4 91 54.9
Sabra16G0303500 Salix brachista HOM05D008613 ORTHO05D006961 2.5e-16 88.6 91 53.8
COL.COLO4_10830 Corchorus olitorius HOM05D008613 ORTHO05D006961 3.3e-16 88.2 89 60.7
Sabra16G0303900 Salix brachista HOM05D008613 ORTHO05D006961 7.4e-16 87.0 91 54.9
Potri.001G449800 Populus trichocarpa HOM05D008613 ORTHO05D006961 2.4e-14 82.0 90 52.2
Potri.001G449900 Populus trichocarpa HOM05D008613 ORTHO05D006961 2.4e-14 82.0 90 52.2
Potri.001G450000 Populus trichocarpa HOM05D008613 ORTHO05D006961 2.4e-14 82.0 90 52.2
Cfa011897 Carpinus fangiana HOM05D019613 ORTHO05D006961 3.8e-12 74.7 85 55.3
Manes.01G055000 Manihot esculenta HOM05D008613 ORTHO05D006961 3.8e-12 74.7 88 51.1
Atru.chr9.1866 Acer truncatum HOM05D008613 ORTHO05D006961 5.0e-12 74.3 91 50.5
Manes.01G055100 Manihot esculenta HOM05D008613 ORTHO05D006961 6.5e-12 73.9 94 53.2
Haze_09201 Corylus avellana HOM05D019613 ORTHO05D006961 2.5e-11 72.0 85 49.4
Prupe.5G133100 Prunus persica HOM05D008613 ORTHO05D006961 2.5e-11 72.0 92 48.9
Oeu061026.1 Olea europaea HOM05D008837 ORTHO05D006961 4.2e-11 71.2 91 46.2
CiPaw.11G110000 Carya illinoinensis HOM05D008613 ORTHO05D006961 5.5e-11 70.9 88 47.7
CSS0022315 Camellia sinensis var. sinensis HOM05D008613 ORTHO05D006961 1.6e-10 69.3 83 45.8
TWI15G0337 Tripterygium wilfordii HOM05D008613 ORTHO05D006961 3.6e-10 68.2 89 49.4
vmacro11487 Vaccinium macrocarpon HOM05D008613 ORTHO05D006961 4.6e-10 67.8 97 43.3
Aa31LG6G7520 Aethionema arabicum HOM05D008703 ORTHO05D006961 6.1e-10 67.4 82 41.5
CSS0023145 Camellia sinensis var. sinensis HOM05D008613 ORTHO05D006961 7.9e-10 67.0 87 48.3
TAR629G3181 Trochodendron aralioides HOM05D008613 ORTHO05D006961 7.9e-10 67.0 91 47.3
Cpa.g.sc37.99 Carica papaya HOM05D008613 ORTHO05D006961 1.4e-09 66.2 91 42.9
Potri.012G021602 Populus trichocarpa HOM05D008837 ORTHO05D006961 1.4e-09 66.2 96 43.8
Prupe.5G133200 Prunus persica HOM05D008613 ORTHO05D006961 1.4e-09 66.2 102 48.0
FvH4_5g10560 Fragaria vesca HOM05D008613 ORTHO05D006961 1.8e-09 65.9 87 48.3
FAN04G2016 Fragaria x ananassa HOM05D008613 ORTHO05D006961 1.8e-09 65.9 87 48.3
FAN08G0050 Fragaria x ananassa HOM05D008613 ORTHO05D006961 1.8e-09 65.9 87 48.3
FAN18G1327 Fragaria x ananassa HOM05D008613 ORTHO05D006961 1.8e-09 65.9 87 48.3
Manes.05G197800 Manihot esculenta HOM05D008837 ORTHO05D011237 1.8e-09 65.9 86 43.0
Hma1.2p1_0415F.1_g148160 Hydrangea macrophylla HOM05D008837 ORTHO05D006961 2.3e-09 65.5 90 44.4
Rhsim02G0253700 Rhododendron simsii HOM05D008613 ORTHO05D006961 2.3e-09 65.5 87 48.3
Solyc03g081330.1 Solanum lycopersicum HOM05D008837 ORTHO05D006961 3.9e-09 64.7 88 45.5
Potri.011G151600 Populus trichocarpa HOM05D008613 ORTHO05D006961 6.7e-09 63.9 87 47.1
RcHm_v2.0_Chr7g0187591 Rosa chinensis HOM05D008613 ORTHO05D006961 8.8e-09 63.5 93 45.2
Nn3g18877 Nelumbo nucifera HOM05D031625 ORTHO05D006961 1.5e-08 62.8 90 44.4
Nn3g18879 Nelumbo nucifera HOM05D031625 ORTHO05D006961 1.5e-08 62.8 90 44.4
Ciclev10023060m.g Citrus clementina HOM05D008837 ORTHO05D006961 4.3e-08 61.2 104 40.4
Nn1g00438 Nelumbo nucifera HOM05D008613 ORTHO05D006961 5.7e-08 60.8 97 44.3
Potri.015G004800 Populus trichocarpa HOM05D008837 ORTHO05D011237 1.3e-07 59.7 95 42.1
THA.LOC104815392 Tarenaya hassleriana HOM05D008703 ORTHO05D006961 1.3e-07 59.7 82 41.5
AL1G47210 Arabidopsis lyrata HOM05D008703 ORTHO05D006961 1.7e-07 59.3 82 40.2
AT1G32928 Arabidopsis thaliana HOM05D008703 ORTHO05D006961 2.2e-07 58.9 83 41.0
Sopen03g022050 Solanum pennellii HOM05D008837 ORTHO05D006961 2.2e-07 58.9 87 43.7
ClCG01G001400 Citrullus lanatus HOM05D018156 ORTHO05D006961 2.8e-07 58.5 85 49.4
Dinv29215 Davidia involucrata HOM05D008837 ORTHO05D006961 2.8e-07 58.5 94 43.6
Ciclev10017302m.g Citrus clementina HOM05D008837 ORTHO05D011237 4.8e-07 57.8 95 38.9
Oeu023687.1 Olea europaea HOM05D008613 ORTHO05D006961 6.3e-07 57.4 88 43.2
Sabra15G0003300 Salix brachista HOM05D008837 ORTHO05D006961 6.3e-07 57.4 92 40.2
Oeu023688.1 Olea europaea HOM05D008613 ORTHO05D006961 8.2e-07 57.0 80 43.8
Atru.chr12.2412 Acer truncatum HOM05D008837 ORTHO05D011237 1.1e-06 56.6 85 38.8
Ah.07g204750 Amaranthus hybridus HOM05D011561 ORTHO05D011237 1.8e-06 55.8 88 40.9
CARHR032250 Cardamine hirsuta HOM05D008703 ORTHO05D006961 1.8e-06 55.8 82 40.2
DCAR_020369 Daucus carota HOM05D008837 ORTHO05D011237 1.8e-06 55.8 84 42.9
Dinv06444 Davidia involucrata HOM05D002018 ORTHO05D002179 1.8e-06 55.8 91 39.6
Rhsim03G0215000 Rhododendron simsii HOM05D000001 ORTHO05D000003 1.8e-06 55.8 98 36.7
Sp1g28080 Schrenkiella parvula HOM05D008703 ORTHO05D006961 1.8e-06 55.8 83 39.8
Actinidia22218 Actinidia chinensis HOM05D008613 ORTHO05D006961 2.4e-06 55.5 80 45.0
Ah.13g070730 Amaranthus hybridus HOM05D008613 ORTHO05D011237 3.1e-06 55.1 89 40.4
CARHR032240 Cardamine hirsuta HOM05D008703 ORTHO05D006961 3.1e-06 55.1 82 45.1
CARHR256120 Cardamine hirsuta HOM05D008703 ORTHO05D006961 3.1e-06 55.1 83 42.2
Thhalv10009742m.g Eutrema salsugineum HOM05D008703 ORTHO05D006961 3.1e-06 55.1 84 36.9
Nitab4.5_0000319g0150 Nicotiana tabacum HOM05D008837 ORTHO05D006961 3.1e-06 55.1 99 40.4
Thecc.03G208100 Theobroma cacao HOM05D018669 ORTHO05D011237 4.1e-06 54.7 89 39.3
DCAR_020368 Daucus carota HOM05D008837 ORTHO05D006961 5.3e-06 54.3 91 40.7
Lsat_1_v5_gn_6_81461 Lactuca sativa HOM05D028809 ORTHO05D025297 6.9e-06 53.9 85 42.4
Aa31LG9G11460 Aethionema arabicum HOM05D008703 ORTHO05D006961 9.1e-06 53.5 84 42.9
Carub.0001s3124 Capsella rubella HOM05D008703 ORTHO05D006961 9.1e-06 53.5 82 41.5
DCAR_008982 Daucus carota HOM05D008837 ORTHO05D006961 9.1e-06 53.5 89 38.2
Duzib205G1426 Durio zibethinus HOM05D018669 ORTHO05D011237 9.1e-06 53.5 86 37.2
Sp6g06920 Schrenkiella parvula HOM05D008703 ORTHO05D006961 9.1e-06 53.5 83 44.6


User provided reference genes

Program Settings