Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G215600 Theobroma cacao HOM05D011672 ORTHO05D011012 0.0e+00 1645.6 849 100.0
Duzib068G0278 Durio zibethinus HOM05D011672 ORTHO05D011012 4.4e-310 1067.8 854 70.8
Duzib084G0474 Durio zibethinus HOM05D011672 ORTHO05D011012 1.1e-257 893.6 769 64.8
Gorai.008G261200 Gossypium raimondii HOM05D011672 ORTHO05D011012 3.4e-201 706.1 844 52.0
Gohir.D12G243700 Gossypium hirsutum HOM05D011672 ORTHO05D011012 1.9e-175 620.5 822 49.4
Gohir.A12G242700 Gossypium hirsutum HOM05D011672 ORTHO05D011012 4.1e-175 619.4 844 49.9
COL.COLO4_10845 Corchorus olitorius HOM05D011672 ORTHO05D011012 4.3e-172 609.4 744 53.0
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 1.2e-68 265.8 933 31.2
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 1.7e-59 235.3 876 29.8
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 1.5e-55 222.2 843 28.7
Potri.011G149601 Populus trichocarpa HOM05D011672 ORTHO05D011012 1.4e-50 205.7 608 32.6
Haze_09217 Corylus avellana HOM05D013249 ORTHO05D011012 2.1e-49 201.8 930 28.7
Cpa.g.sc37.109 Carica papaya HOM05D011672 ORTHO05D012736 4.3e-47 194.1 678 28.5
Sabra11G0134500 Salix brachista HOM05D011672 ORTHO05D011012 3.2e-42 177.9 625 30.6
Prupe.5G135100 Prunus persica HOM05D013249 ORTHO05D011012 7.3e-39 166.8 851 27.3
CiPaw.12G074500 Carya illinoinensis HOM05D011672 ORTHO05D011012 2.5e-31 141.7 470 31.7
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 5.3e-29 134.0 789 25.2
TWI81G0792 Tripterygium wilfordii HOM05D011672 ORTHO05D011012 3.4e-28 131.3 651 25.8
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.7e-27 129.0 896 23.3
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 3.9e-24 117.9 570 27.0
Atru.chr9.1833 Acer truncatum HOM05D011672 ORTHO05D011012 1.7e-19 102.4 179 39.7
Eucgr.L00346 Eucalyptus grandis HOM05D013249 ORTHO05D011012 2.9e-19 101.7 876 23.9
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 6.5e-19 100.5 669 24.7
FAN08G0662 Fragaria x ananassa HOM05D013249 ORTHO05D011012 1.4e-18 99.4 734 24.1
Lalb_Chr18g0054711 Lupinus albus HOM05D013241 ORTHO05D011012 1.4e-18 99.4 435 27.1
FAN04G0229 Fragaria x ananassa HOM05D013249 ORTHO05D011012 3.2e-18 98.2 728 25.0
RcHm_v2.0_Chr7g0187831 Rosa chinensis HOM05D013249 ORTHO05D011012 1.2e-17 96.3 725 24.0
FvH4_5g10390 Fragaria vesca HOM05D013249 ORTHO05D011012 6.0e-17 94.0 746 23.7
Phvul.006G174000 Phaseolus vulgaris HOM05D013241 ORTHO05D011012 6.7e-16 90.5 461 26.9
FAN13G1375 Fragaria x ananassa HOM05D013249 ORTHO05D011012 8.7e-16 90.1 731 24.4
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 2.5e-15 88.6 814 23.8
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 2.5e-15 88.6 741 24.6
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 4.3e-15 87.8 723 22.8
FAN18G3072 Fragaria x ananassa HOM05D013249 ORTHO05D011012 1.3e-14 86.3 746 23.3
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 1.6e-14 85.9 782 23.3
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 2.1e-14 85.5 790 24.6
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 1.1e-13 83.2 753 24.0
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 1.8e-13 82.4 433 23.6
VMungo0540G2099 Vigna mungo HOM05D013241 ORTHO05D011012 3.4e-12 78.2 463 25.1
Glyma.13G227600 Glycine max HOM05D013241 ORTHO05D011012 1.0e-11 76.6 462 26.4
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 1.7e-11 75.9 824 23.2
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 5.0e-11 74.3 578 23.7
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 1.4e-10 72.8 613 22.7
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 3.2e-10 71.6 455 25.3
TPR.G4557 Trifolium pratense HOM05D013241 ORTHO05D011012 5.5e-10 70.9 504 23.4
arahy.Tifrunner.gnm1.ann1.69Z0CE Arachis hypogaea HOM05D013241 ORTHO05D011012 9.3e-10 70.1 469 26.4
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 9.3e-10 70.1 487 24.4
Lj6g0008807 Lotus japonicus HOM05D013241 ORTHO05D011012 1.2e-09 69.7 462 24.2
arahy.Tifrunner.gnm1.ann1.62N0H4 Arachis hypogaea HOM05D000074 ORTHO05D011012 2.1e-09 68.9 470 26.8
MBI04_g41177_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 3.5e-09 68.2 276 25.0
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 4.6e-09 67.8 204 28.4
Atru.chr9.1832 Acer truncatum HOM05D011672 ORTHO05D011012 1.0e-08 66.6 103 42.7
Ca_00458_v3 Cicer arietinum L. HOM05D013241 ORTHO05D011012 1.3e-08 66.2 468 23.5
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 1.8e-08 65.9 276 24.6
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 3.0e-08 65.1 210 26.7
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 8.7e-08 63.5 723 21.6
Medtr2g016640 Medicago truncatula HOM05D013241 ORTHO05D011012 3.3e-07 61.6 495 23.4
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 5.7e-07 60.8 251 25.1
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 9.7e-07 60.1 608 22.7
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 3.7e-06 58.2 917 21.8
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 4.8e-06 57.8 478 22.8
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 8.2e-06 57.0 473 23.9


User provided reference genes

Program Settings