Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G215400 Theobroma cacao HOM05D007891 ORTHO05D009992 1.8e-21 105.1 58 100.0
COL.COLO4_10847 Corchorus olitorius HOM05D007891 ORTHO05D009992 8.3e-19 96.3 58 93.1
Gorai.003G073400 Gossypium raimondii HOM05D007891 ORTHO05D009992 7.0e-18 93.2 58 89.7
Gohir.A02G095100 Gossypium hirsutum HOM05D007891 ORTHO05D009992 1.6e-17 92.0 58 87.9
Gohir.D03G088400 Gossypium hirsutum HOM05D007891 ORTHO05D009992 2.0e-17 91.7 58 87.9
Duzib205G0121 Durio zibethinus HOM05D007891 ORTHO05D009992 1.3e-16 89.0 55 85.5
Manes.01G000186 Manihot esculenta HOM05D007891 ORTHO05D009992 6.6e-16 86.7 59 83.1
Gohir.A08G108600 Gossypium hirsutum HOM05D007891 ORTHO05D009992 1.9e-15 85.1 57 80.7
Gorai.004G128000 Gossypium raimondii HOM05D007891 ORTHO05D009992 1.9e-15 85.1 58 82.8
Ciclev10023227m.g Citrus clementina HOM05D007891 ORTHO05D009992 3.3e-15 84.3 67 74.6
Gohir.D08G121300 Gossypium hirsutum HOM05D007891 ORTHO05D009992 9.5e-15 82.8 58 81.0
Gohir.A09G187300 Gossypium hirsutum HOM05D007891 ORTHO05D009992 1.2e-14 82.4 58 77.6
Prupe.5G135300 Prunus persica HOM05D007891 ORTHO05D009992 4.7e-14 80.5 62 75.8
MD06G1124700 Malus domestica HOM05D007891 ORTHO05D009992 1.1e-13 79.3 62 71.0
Gohir.D09G182100 Gossypium hirsutum HOM05D007891 ORTHO05D009992 1.4e-13 79.0 58 75.9
Gorai.006G204200 Gossypium raimondii HOM05D007891 ORTHO05D009992 1.4e-13 79.0 58 75.9
MD00G1096700 Malus domestica HOM05D007891 ORTHO05D009992 1.4e-13 79.0 62 71.0
ATR0579G034 Amborella trichopoda HOM05D007891 ORTHO05D009992 4.0e-13 77.4 55 78.2
Nn3g18767 Nelumbo nucifera HOM05D007891 ORTHO05D009992 5.2e-13 77.0 50 82.0
TWI15G0344 Tripterygium wilfordii HOM05D007891 ORTHO05D009992 5.2e-13 77.0 57 73.7
Potri.011G149400 Populus trichocarpa HOM05D007891 ORTHO05D009992 8.9e-13 76.3 57 75.4
QL12p003189 Quercus lobata HOM05D007891 ORTHO05D009992 1.2e-12 75.9 57 75.4
RcHm_v2.0_Chr7g0187861 Rosa chinensis HOM05D007891 ORTHO05D009992 3.4e-12 74.3 56 75.0
Cfa011885 Carpinus fangiana HOM05D007891 ORTHO05D009992 4.4e-12 73.9 56 75.0
CANSAT21G1412 Cannabis sativa HOM05D007891 ORTHO05D009992 7.5e-12 73.2 51 76.5
Nn1g05266 Nelumbo nucifera HOM05D007891 ORTHO05D009992 1.3e-11 72.4 60 70.0
Zm00001eb250770 Zea mays HOM05D007891 ORTHO05D009992 1.7e-11 72.0 56 75.0
PGR042G1189 Punica granatum HOM05D007891 ORTHO05D009992 4.9e-11 70.5 51 72.5
Haze_09219 Corylus avellana HOM05D000010 ORTHO05D000063 1.1e-10 69.3 42 83.3
Phvul.006G173900 Phaseolus vulgaris HOM05D007891 ORTHO05D009992 1.1e-10 69.3 57 64.9
Zm00001eb072990 Zea mays HOM05D007891 ORTHO05D009992 1.1e-10 69.3 52 76.9
Os04g0581700 Oryza sativa ssp. japonica HOM05D007891 ORTHO05D009992 1.4e-10 68.9 52 75.0
Migut.A01060 Erythranthe guttata HOM05D007891 ORTHO05D009992 2.4e-10 68.2 70 60.0
Medtr2g016650 Medicago truncatula HOM05D007891 ORTHO05D009992 4.1e-10 67.4 50 72.0
Ca_00459_v3 Cicer arietinum L. HOM05D007891 ORTHO05D009992 1.2e-09 65.9 50 70.0
THA.LOC104806463 Tarenaya hassleriana HOM05D007891 ORTHO05D009992 1.2e-09 65.9 51 70.6
TPR.G27295 Trifolium pratense HOM05D007891 ORTHO05D009992 2.1e-09 65.1 50 70.0
Eucgr.L00345 Eucalyptus grandis HOM05D007891 ORTHO05D009992 2.7e-09 64.7 55 67.3
arahy.Tifrunner.gnm1.ann1.GMZ6HP Arachis hypogaea HOM05D007891 ORTHO05D009992 3.5e-09 64.3 50 70.0
Lalb_Chr20g0117551 Lupinus albus HOM05D007891 ORTHO05D009992 4.6e-09 63.9 55 65.5
Lj6g0010842 Lotus japonicus HOM05D007891 ORTHO05D009992 3.9e-08 60.8 50 64.0
Os07g0469200 Oryza sativa ssp. japonica HOM05D007891 ORTHO05D009992 3.9e-08 60.8 59 62.7
A09p33310 Brassica napus HOM05D007891 ORTHO05D009992 8.6e-08 59.7 55 61.8
BraA09t38876Z Brassica rapa HOM05D007891 ORTHO05D009992 8.6e-08 59.7 55 61.8
AL1G47370 Arabidopsis lyrata HOM05D007891 ORTHO05D009992 1.9e-07 58.5 59 59.3
PSO063G6751 Papaver somniferum HOM05D007891 ORTHO05D009992 1.9e-07 58.5 59 61.0
AT1G33055 Arabidopsis thaliana HOM05D007891 ORTHO05D009992 2.5e-07 58.2 59 59.3
SalBow6G2331 Salvia bowleyana HOM05D007891 ORTHO05D009992 2.5e-07 58.2 47 68.1
Sed0006175 Sechium edule HOM05D007891 ORTHO05D009992 2.5e-07 58.2 44 68.2
HPP92_022259 Vanilla planifolia HOM05D007891 ORTHO05D009992 2.5e-07 58.2 47 72.3
C05p32460 Brassica napus HOM05D007891 ORTHO05D009992 3.3e-07 57.8 59 59.3
BolC5t31978H Brassica oleracea HOM05D007891 ORTHO05D009992 3.3e-07 57.8 59 59.3
Carub.0001s3132 Capsella rubella HOM05D007891 ORTHO05D009992 3.3e-07 57.8 57 56.1
CiPaw.11G108500 Carya illinoinensis HOM05D007891 ORTHO05D009992 7.3e-07 56.6 40 75.0
Potri.001G452500 Populus trichocarpa HOM05D007891 ORTHO05D009992 7.3e-07 56.6 39 76.9
CSS0018813 Camellia sinensis var. sinensis HOM05D007891 ORTHO05D009992 1.2e-06 55.8 55 58.2
Thhalv10009221m.g Eutrema salsugineum HOM05D007891 ORTHO05D009992 1.2e-06 55.8 59 55.9
ClCG01G001300 Citrullus lanatus HOM05D007891 ORTHO05D009992 2.8e-06 54.7 45 60.0
Actinidia22232 Actinidia chinensis HOM05D007891 ORTHO05D009992 8.1e-06 53.1 57 59.6
BcaB03g13704 Brassica carinata HOM05D007891 ORTHO05D009992 8.1e-06 53.1 59 54.2


User provided reference genes

Program Settings