Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G212300 Theobroma cacao HOM05D003381 ORTHO05D003880 1.5e-35 152.9 113 100.0
Duzib205G0505 Durio zibethinus HOM05D003381 ORTHO05D003880 2.6e-24 115.5 114 86.0
Thecc.03G212200 Theobroma cacao HOM05D003381 ORTHO05D003880 2.2e-23 112.5 113 82.3
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 6.4e-23 110.9 114 74.6
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 5.9e-21 104.4 114 67.5
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 5.9e-21 104.4 114 71.1
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 5.9e-21 104.4 114 71.1
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.5e-19 99.8 114 69.3
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.9e-19 99.4 114 68.4
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 1.9e-19 99.4 114 68.4
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 1.2e-18 96.7 114 67.5
Duzib068G1330 Durio zibethinus HOM05D003381 ORTHO05D003880 2.3e-17 92.4 99 82.8
vmacro06477 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 5.4e-14 81.3 118 70.3
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 2.0e-13 79.3 88 54.5
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 6.0e-13 77.8 105 46.7
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 7.8e-13 77.4 103 48.5
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 1.0e-12 77.0 100 66.0
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 3.9e-12 75.1 86 53.5
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 3.9e-12 75.1 86 53.5
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 2.5e-11 72.4 107 57.9
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 3.3e-11 72.0 117 51.3
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 4.3e-11 71.6 117 47.0
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 4.3e-11 71.6 113 52.2
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 5.6e-11 71.2 116 37.9
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 5.6e-11 71.2 92 64.1
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 7.3e-11 70.9 92 58.7
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 9.5e-11 70.5 84 51.2
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 9.5e-11 70.5 97 51.5
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 9.5e-11 70.5 93 46.2
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 1.2e-10 70.1 92 46.7
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 1.2e-10 70.1 88 47.7
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 2.1e-10 69.3 104 50.0
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.8e-10 68.9 92 56.5
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 3.6e-10 68.6 118 39.8
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 3.6e-10 68.6 97 42.3
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 3.6e-10 68.6 117 53.0
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 3.6e-10 68.6 101 43.6
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 6.2e-10 67.8 93 45.2
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 8.1e-10 67.4 87 44.8
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 8.1e-10 67.4 101 43.6
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 8.1e-10 67.4 92 59.8
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 8.1e-10 67.4 117 53.0
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 8.1e-10 67.4 91 54.9
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 1.1e-09 67.0 117 48.7
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 1.4e-09 66.6 118 40.7
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 1.4e-09 66.6 85 51.8
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 1.8e-09 66.2 95 45.3
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 1.8e-09 66.2 108 46.3
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 2.3e-09 65.9 35 91.4
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 2.3e-09 65.9 110 41.8
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 2.3e-09 65.9 86 53.5
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 2.3e-09 65.9 86 53.5
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.3e-09 65.9 98 52.0
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 3.1e-09 65.5 103 37.9
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 3.1e-09 65.5 103 37.9
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 3.1e-09 65.5 89 43.8
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 3.1e-09 65.5 96 41.7
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 3.1e-09 65.5 85 54.1
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 3.1e-09 65.5 115 41.7
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 4.0e-09 65.1 103 53.4
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.0e-09 65.1 98 42.9
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 4.0e-09 65.1 114 50.0
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 4.0e-09 65.1 91 44.0
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 4.0e-09 65.1 77 51.9
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 5.2e-09 64.7 85 54.1
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 6.8e-09 64.3 90 55.6
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 6.8e-09 64.3 103 36.9
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 6.8e-09 64.3 107 43.0
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 6.8e-09 64.3 96 54.2
Solyc03g096770.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 6.8e-09 64.3 117 48.7
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 8.9e-09 63.9 107 42.1
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 8.9e-09 63.9 92 52.2
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 8.9e-09 63.9 99 41.4
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 8.9e-09 63.9 96 44.8
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 8.9e-09 63.9 106 38.7
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 1.2e-08 63.5 110 45.5
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 1.2e-08 63.5 103 43.7
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 1.2e-08 63.5 89 46.1
Peaxi162Scf01650g00008 Petunia axillaris HOM05D003381 ORTHO05D003880 1.5e-08 63.2 118 57.6
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 1.5e-08 63.2 83 44.6
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 1.5e-08 63.2 108 42.6
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 2.0e-08 62.8 109 42.2
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 2.0e-08 62.8 112 39.3
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 2.0e-08 62.8 91 44.0
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 2.0e-08 62.8 108 40.7
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 2.6e-08 62.4 93 48.4
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 3.4e-08 62.0 90 43.3
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 3.4e-08 62.0 77 49.4
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 4.4e-08 61.6 103 38.8
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 5.8e-08 61.2 101 40.6
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 5.8e-08 61.2 84 42.9
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 5.8e-08 61.2 82 42.7
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 5.8e-08 61.2 108 40.7
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 7.5e-08 60.8 79 59.5
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 7.5e-08 60.8 99 45.5
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 7.5e-08 60.8 113 39.8
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 9.9e-08 60.5 107 40.2
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 9.9e-08 60.5 109 51.4
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 1.3e-07 60.1 82 43.9
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.3e-07 60.1 111 45.0
MBI12_g23072_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 1.7e-07 59.7 86 72.1
MBI12_g23073_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 1.7e-07 59.7 104 64.4
MBI12_g33141_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 1.7e-07 59.7 86 72.1
QL11p009417 Quercus lobata HOM05D003381 ORTHO05D003880 1.7e-07 59.7 87 63.2
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 1.7e-07 59.7 111 40.5
vmacro06476 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 1.7e-07 59.7 88 56.8
Eucgr.K00482 Eucalyptus grandis HOM05D003381 ORTHO05D003880 2.9e-07 58.9 107 47.7
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 4.9e-07 58.2 75 48.0
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 4.9e-07 58.2 93 40.9
MBI04_g09823_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 4.9e-07 58.2 114 50.0
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 4.9e-07 58.2 48 58.3
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 6.4e-07 57.8 92 38.0
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 6.4e-07 57.8 89 42.7
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 6.4e-07 57.8 85 40.0
CiPaw.06G038100 Carya illinoinensis HOM05D003381 ORTHO05D003880 8.3e-07 57.4 98 57.1
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 8.3e-07 57.4 96 40.6
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 8.3e-07 57.4 87 42.5
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 8.3e-07 57.4 86 39.5
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 1.1e-06 57.0 74 44.6
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 1.1e-06 57.0 95 41.1
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 2.4e-06 55.8 84 40.5
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 3.2e-06 55.5 89 41.6
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 3.2e-06 55.5 87 39.1
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 4.1e-06 55.1 86 38.4
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 4.1e-06 55.1 79 45.6
SEGI_37007 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 4.1e-06 55.1 91 45.1
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 4.1e-06 55.1 78 46.2
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 7.1e-06 54.3 79 44.3
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 9.2e-06 53.9 79 44.3
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 9.2e-06 53.9 91 40.7
Eucgr.K00530 Eucalyptus grandis HOM05D003381 ORTHO05D003880 9.2e-06 53.9 99 46.5


User provided reference genes

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