Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G208100 Theobroma cacao HOM05D018669 ORTHO05D011237 1.6e-39 165.6 83 100.0
COL.COLO4_14365 Corchorus olitorius HOM05D018669 ORTHO05D011237 1.2e-23 112.8 83 71.1
Duzib205G1426 Durio zibethinus HOM05D018669 ORTHO05D011237 1.2e-23 112.8 87 67.8
Gohir.A09G186700 Gossypium hirsutum HOM05D018669 ORTHO05D011237 4.1e-19 97.8 91 64.8
Gorai.006G203600 Gossypium raimondii HOM05D018669 ORTHO05D011237 4.5e-18 94.4 95 61.1
Gohir.D09G181600 Gossypium hirsutum HOM05D018669 ORTHO05D011237 5.0e-17 90.9 95 61.1
Sabra15G0003300 Salix brachista HOM05D008837 ORTHO05D006961 1.5e-13 79.3 93 52.7
Manes.05G197800 Manihot esculenta HOM05D008837 ORTHO05D011237 7.5e-13 77.0 87 51.7
Potri.015G004800 Populus trichocarpa HOM05D008837 ORTHO05D011237 2.8e-12 75.1 93 53.8
Potri.012G021602 Populus trichocarpa HOM05D008837 ORTHO05D006961 1.1e-11 73.2 94 50.0
Dinv29215 Davidia involucrata HOM05D008837 ORTHO05D006961 4.1e-11 71.2 95 47.4
PGR042G1156 Punica granatum HOM05D008837 ORTHO05D011237 4.1e-11 71.2 97 48.5
Nitab4.5_0000319g0150 Nicotiana tabacum HOM05D008837 ORTHO05D006961 9.1e-11 70.1 103 45.6
Eucgr.A01409 Eucalyptus grandis HOM05D008837 ORTHO05D011237 2.7e-10 68.6 89 48.3
Hma1.2p1_0415F.1_g148160 Hydrangea macrophylla HOM05D008837 ORTHO05D006961 3.5e-10 68.2 93 48.4
Ciclev10023060m.g Citrus clementina HOM05D008837 ORTHO05D006961 4.5e-10 67.8 93 48.4
Oeu061026.1 Olea europaea HOM05D008837 ORTHO05D006961 4.5e-10 67.8 87 49.4
Atru.chr12.2412 Acer truncatum HOM05D008837 ORTHO05D011237 7.7e-10 67.0 90 48.9
Eucgr.A01407 Eucalyptus grandis HOM05D008837 ORTHO05D011237 7.7e-10 67.0 89 47.2
Actinidia08695 Actinidia chinensis HOM05D008837 ORTHO05D006961 1.0e-09 66.6 92 47.8
Ciclev10017302m.g Citrus clementina HOM05D008837 ORTHO05D011237 1.0e-09 66.6 95 44.2
Ah.07g204750 Amaranthus hybridus HOM05D011561 ORTHO05D011237 2.2e-09 65.5 88 45.5
AT5G54165 Arabidopsis thaliana HOM05D011561 ORTHO05D011237 2.9e-09 65.1 83 45.8
Nitab4.5_0000319g0090 Nicotiana tabacum HOM05D008837 ORTHO05D006961 2.9e-09 65.1 100 47.0
Rhsim03G0215000 Rhododendron simsii HOM05D000001 ORTHO05D000003 2.9e-09 65.1 101 42.6
TAR629G3181 Trochodendron aralioides HOM05D008613 ORTHO05D006961 2.9e-09 65.1 89 42.7
CSS0023145 Camellia sinensis var. sinensis HOM05D008613 ORTHO05D006961 5.0e-09 64.3 91 49.5
DCAR_020368 Daucus carota HOM05D008837 ORTHO05D006961 6.5e-09 63.9 91 42.9
Thhalv10015156m.g Eutrema salsugineum HOM05D011561 ORTHO05D011237 8.5e-09 63.5 86 44.2
CSS0022315 Camellia sinensis var. sinensis HOM05D008613 ORTHO05D006961 1.1e-08 63.2 91 49.5
BraA03t10770Z Brassica rapa HOM05D011561 ORTHO05D011237 1.5e-08 62.8 85 44.7
Carub.0008s1447 Capsella rubella HOM05D011561 ORTHO05D011237 1.9e-08 62.4 83 47.0
DCAR_020369 Daucus carota HOM05D008837 ORTHO05D011237 1.9e-08 62.4 87 42.5
PGSC0003DMG400003217 Solanum tuberosum HOM05D008837 ORTHO05D006961 1.9e-08 62.4 93 46.2
AL8G29380 Arabidopsis lyrata HOM05D011561 ORTHO05D011237 4.2e-08 61.2 82 47.6
Cc00_g29530 Coffea canephora HOM05D008837 ORTHO05D011237 4.2e-08 61.2 113 39.8
Solyc03g081330.1 Solanum lycopersicum HOM05D008837 ORTHO05D006961 4.2e-08 61.2 91 44.0
Nn1g00438 Nelumbo nucifera HOM05D008613 ORTHO05D006961 5.5e-08 60.8 91 49.5
BcaC01g06288 Brassica carinata HOM05D011561 ORTHO05D011237 7.2e-08 60.5 85 44.7
BcaC01g06291 Brassica carinata HOM05D011561 ORTHO05D011237 7.2e-08 60.5 85 44.7
BolC3t14140H Brassica oleracea HOM05D011561 ORTHO05D011237 7.2e-08 60.5 85 44.7
Gorai.004G128500 Gossypium raimondii HOM05D008613 ORTHO05D006961 7.2e-08 60.5 85 43.5
Cpa.g.sc3.157 Carica papaya HOM05D008837 ORTHO05D011237 1.2e-07 59.7 90 38.9
Gohir.D08G121900 Gossypium hirsutum HOM05D008613 ORTHO05D006961 1.2e-07 59.7 84 41.7
Sp6g16220 Schrenkiella parvula HOM05D011561 ORTHO05D011237 1.6e-07 59.3 83 42.2
Sopen03g022050 Solanum pennellii HOM05D008837 ORTHO05D006961 1.6e-07 59.3 89 42.7
DCAR_008982 Daucus carota HOM05D008837 ORTHO05D006961 2.1e-07 58.9 87 43.7
Cfa016165 Carpinus fangiana HOM05D001784 ORTHO05D001699 2.7e-07 58.5 77 40.3
Ah.13g070730 Amaranthus hybridus HOM05D008613 ORTHO05D011237 3.6e-07 58.2 90 43.3
Nitab4.5_0000319g0160 Nicotiana tabacum HOM05D008837 ORTHO05D006961 3.6e-07 58.2 98 44.9
Nitab4.5_0005040g0030 Nicotiana tabacum HOM05D008837 ORTHO05D006961 3.6e-07 58.2 101 42.6
Gohir.A08G109100 Gossypium hirsutum HOM05D008613 ORTHO05D006961 6.1e-07 57.4 85 43.5
PGSC0003DMG400043889 Solanum tuberosum HOM05D008837 ORTHO05D006961 6.1e-07 57.4 104 39.4
DCAR_008981 Daucus carota HOM05D008837 ORTHO05D011237 8.0e-07 57.0 91 42.9
BcaB01g04281 Brassica carinata HOM05D011561 ORTHO05D011237 1.0e-06 56.6 82 40.2
Sopen03g022090 Solanum pennellii HOM05D008837 ORTHO05D006961 1.4e-06 56.2 94 44.7
EL10Ac3g05185 Beta vulgaris HOM05D008837 ORTHO05D006961 1.8e-06 55.8 95 40.0
Nitab4.5_0014067g0010 Nicotiana tabacum HOM05D008837 ORTHO05D006961 2.3e-06 55.5 94 38.3
Gohir.A02G099100 Gossypium hirsutum HOM05D008613 ORTHO05D006961 3.0e-06 55.1 87 37.9
PGSC0003DMG400003216 Solanum tuberosum HOM05D008837 ORTHO05D006961 3.0e-06 55.1 100 36.0
Gohir.D03G084800 Gossypium hirsutum HOM05D008613 ORTHO05D006961 4.0e-06 54.7 87 37.9
Gorai.003G077900 Gossypium raimondii HOM05D008613 ORTHO05D006961 5.2e-06 54.3 87 37.9
Thecc.03G217500 Theobroma cacao HOM05D008613 ORTHO05D006961 5.2e-06 54.3 89 39.3
TWI15G0337 Tripterygium wilfordii HOM05D008613 ORTHO05D006961 5.2e-06 54.3 89 37.1
Sabra16G0303600 Salix brachista HOM05D008613 ORTHO05D006961 6.8e-06 53.9 92 42.4
Sabra16G0303800 Salix brachista HOM05D008613 ORTHO05D006961 6.8e-06 53.9 91 39.6
Glyma.04G228900 Glycine max HOM05D012585 ORTHO05D015068 8.8e-06 53.5 84 42.9
Peaxi162Scf00300g00088 Petunia axillaris HOM05D008837 ORTHO05D006961 8.8e-06 53.5 101 38.6


User provided reference genes

Program Settings