Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 0.0e+00 1859.3 915 100.0
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 0.0e+00 1406.7 933 76.2
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 0.0e+00 1398.6 933 75.8
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 0.0e+00 1293.9 858 77.5
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 0.0e+00 1125.9 918 63.3
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 0.0e+00 1124.0 919 62.6
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 0.0e+00 1099.7 920 64.7
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 5.2e-309 1064.3 918 61.0
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 3.2e-306 1055.0 925 58.6
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 4.9e-299 1031.2 645 79.4
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 2.4e-298 1028.9 927 58.7
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 1.3e-296 1023.1 931 58.5
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 1.9e-295 1019.2 932 58.2
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 2.4e-293 1012.3 932 57.8
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 2.1e-289 999.2 881 60.3
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 1.3e-283 979.9 1113 50.0
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 1.9e-279 966.1 914 56.3
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 1.6e-273 946.4 916 56.1
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 2.1e-273 946.0 916 55.9
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 6.0e-273 944.5 915 56.0
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 1.3e-272 943.3 1110 47.5
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 1.3e-272 943.3 920 54.3
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 6.7e-272 941.0 915 55.8
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 1.5e-271 939.9 915 55.8
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 1.6e-270 936.4 924 55.5
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 1.9e-263 912.9 1116 47.3
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 2.4e-261 906.0 1120 46.6
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 3.4e-260 902.1 929 52.6
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 7.7e-252 874.4 927 50.9
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 5.5e-250 868.2 1103 46.2
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 1.2e-249 867.1 912 50.3
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 1.6e-249 866.7 912 51.3
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 2.7e-249 865.9 934 49.7
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 4.8e-246 855.1 915 50.8
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 6.3e-246 854.7 913 50.2
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 8.2e-246 854.4 912 50.4
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 1.1e-245 854.0 910 51.2
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 1.4e-245 853.6 845 55.5
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 1.4e-245 853.6 930 52.0
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 1.2e-244 850.5 913 49.2
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 1.3e-243 847.0 930 52.6
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 1.3e-243 847.0 931 49.3
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 6.5e-243 844.7 929 48.4
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 2.7e-241 839.3 1103 44.5
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 8.0e-241 837.8 933 49.7
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 8.0e-241 837.8 912 48.7
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 1.0e-240 837.4 928 49.7
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 2.3e-240 836.3 917 49.7
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 4.0e-240 835.5 931 49.1
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 1.2e-239 833.9 930 49.0
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 2.6e-239 832.8 930 49.0
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 1.1e-237 827.4 932 48.5
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 1.8e-237 826.6 929 47.3
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 1.8e-237 826.6 902 49.7
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 2.4e-237 826.2 934 48.4
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 9.1e-237 824.3 914 48.7
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 1.6e-236 823.5 915 47.8
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 1.7e-235 820.1 944 47.2
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 5.0e-235 818.5 916 49.9
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 8.5e-235 817.8 930 49.4
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 2.7e-233 812.8 928 48.3
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 1.4e-229 800.4 931 46.9
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 1.2e-228 797.3 931 47.3
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 1.5e-223 780.4 655 61.8
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 5.7e-223 778.5 922 47.9
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 3.1e-221 772.7 928 46.9
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 3.5e-220 769.2 932 46.2
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 6.6e-219 765.0 932 46.1
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 3.7e-214 749.2 1061 42.6
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 4.1e-213 745.7 926 46.3
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.6e-212 743.8 926 46.1
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 2.3e-208 729.9 915 44.9
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 6.8e-208 728.4 1088 41.3
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 1.7e-206 723.8 820 48.8
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 2.9e-206 723.0 922 46.3
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.4e-205 720.7 922 45.1
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 4.6e-204 715.7 918 44.3
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 1.5e-199 700.7 879 45.8
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 7.1e-197 691.8 1067 39.9
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 1.5e-194 684.1 944 43.2
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 4.0e-192 676.0 817 45.3
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 6.8e-192 675.2 1140 37.6
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 4.9e-190 669.1 870 45.1
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 4.1e-189 666.0 824 46.0
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 2.1e-188 663.7 708 52.7
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 2.7e-188 663.3 900 43.2
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 8.7e-187 658.3 884 44.3
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 4.9e-182 642.5 1023 40.1
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 2.8e-177 626.7 794 44.8
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 2.6e-175 620.2 976 38.1
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 3.7e-169 599.7 689 49.6
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 4.2e-165 586.3 956 39.3
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 4.9e-158 562.8 492 58.7
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 7.9e-156 555.4 536 55.2
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 2.7e-148 530.4 568 49.5
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 2.3e-139 500.7 918 36.5
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 1.5e-138 498.0 633 46.3
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 3.5e-135 486.9 625 43.8
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 3.5e-135 486.9 957 34.3
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 1.9e-125 454.5 958 34.1
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 5.2e-123 446.4 531 46.5
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 2.2e-121 441.0 576 45.5
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 6.1e-116 422.9 723 38.9
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 7.0e-112 409.5 954 32.5
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 9.5e-109 399.1 594 39.1
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 4.4e-106 390.2 431 49.2
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 8.3e-105 386.0 1197 27.2
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 3.3e-101 374.0 489 44.8
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 2.1e-100 371.3 386 52.6
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 9.8e-90 335.9 226 73.5
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 3.7e-89 334.0 682 35.9
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 8.6e-86 322.8 372 49.2
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 2.5e-85 321.2 379 44.9
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 3.4e-74 284.3 939 28.6
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 1.1e-72 279.3 334 48.8
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 4.6e-71 273.9 262 56.9
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 1.5e-66 258.8 304 47.4
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 1.7e-65 255.4 216 59.7
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 1.7e-65 255.4 373 41.3
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 1.9e-61 241.9 160 68.8
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 4.8e-60 237.3 669 29.3
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 1.7e-57 228.8 194 58.8
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 1.8e-54 218.8 207 53.6
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 4.0e-51 207.6 199 53.3
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 3.2e-48 198.0 274 42.0
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 1.2e-47 196.1 848 25.8
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 2.3e-38 165.2 407 31.0
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 5.7e-37 160.6 109 67.9
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 4.8e-28 131.0 200 37.0
SHI24234 Sapria himalayana HOM05D005399 ORTHO05D006347 3.4e-26 124.8 123 54.5
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 3.9e-22 111.3 91 54.9
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 6.3e-20 104.0 79 59.5
Medtr1g085950 Medicago truncatula HOM05D005399 ORTHO05D006347 1.4e-19 102.8 85 62.4
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 1.0e-17 96.7 145 42.8
MCO09G305 Micromonas commoda HOM05D005399 ORTHO05D006347 2.6e-10 72.0 154 31.2
SHI24230 Sapria himalayana HOM05D005399 ORTHO05D006347 7.2e-08 63.9 42 73.8
EL10As6g23691 Beta vulgaris HOM05D005399 ORTHO05D006347 3.6e-07 61.6 61 44.3
MBI17_g10900_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 5.2e-06 57.8 105 36.2


User provided reference genes

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