Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G206900 Theobroma cacao HOM05D006482 ORTHO05D008149 7.0e-31 136.7 73 100.0
COL.COLO4_14353 Corchorus olitorius HOM05D006482 ORTHO05D008149 7.2e-28 126.7 73 89.0
Duzib205G0332 Durio zibethinus HOM05D006482 ORTHO05D008149 2.1e-27 125.2 73 89.0
Gohir.A08G103900 Gossypium hirsutum HOM05D006482 ORTHO05D008149 6.1e-27 123.6 73 89.0
Gohir.D08G115300 Gossypium hirsutum HOM05D006482 ORTHO05D008149 1.8e-26 122.1 73 87.7
Gorai.004G124200 Gossypium raimondii HOM05D006482 ORTHO05D008149 1.8e-26 122.1 73 87.7
Atru.chr12.2369 Acer truncatum HOM05D006482 ORTHO05D008149 4.0e-26 120.9 73 86.3
Gorai.008G265700 Gossypium raimondii HOM05D006482 ORTHO05D008149 2.6e-25 118.2 73 84.9
Gohir.A12G246900 Gossypium hirsutum HOM05D006482 ORTHO05D008149 9.8e-25 116.3 73 83.6
Ciclev10023193m.g Citrus clementina HOM05D006482 ORTHO05D008149 1.7e-24 115.5 73 82.2
Duzib068G1219 Durio zibethinus HOM05D006482 ORTHO05D008149 2.8e-24 114.8 88 73.9
Aa31LG3G9780 Aethionema arabicum HOM05D006482 ORTHO05D008149 1.8e-23 112.1 73 76.7
Manes.01G041500 Manihot esculenta HOM05D006482 ORTHO05D008149 2.7e-22 108.2 73 76.7
Prupe.2G317400 Prunus persica HOM05D006482 ORTHO05D008149 2.7e-22 108.2 73 76.7
QL05p036199 Quercus lobata HOM05D006482 ORTHO05D008149 2.7e-22 108.2 72 79.2
RcHm_v2.0_Chr1g0382671 Rosa chinensis HOM05D006482 ORTHO05D008149 4.5e-22 107.5 73 76.7
GSVIVG01038627001 Vitis vinifera HOM05D006482 ORTHO05D008149 4.5e-22 107.5 73 76.7
FvH4_7g32700 Fragaria vesca HOM05D006482 ORTHO05D008149 7.7e-22 106.7 73 75.3
FAN01G3112 Fragaria x ananassa HOM05D006482 ORTHO05D008149 7.7e-22 106.7 73 75.3
FAN03G2872 Fragaria x ananassa HOM05D006482 ORTHO05D008149 7.7e-22 106.7 73 75.3
MD01G1227400 Malus domestica HOM05D006482 ORTHO05D008149 1.0e-21 106.3 73 76.7
Potri.015G006500 Populus trichocarpa HOM05D006482 ORTHO05D008149 1.0e-21 106.3 73 75.3
Sabra15G0004500 Salix brachista HOM05D006482 ORTHO05D008149 1.3e-21 105.9 73 74.0
THA.LOC109117152 Tarenaya hassleriana HOM05D006482 ORTHO05D008149 1.3e-21 105.9 69 76.8
AL8G28600 Arabidopsis lyrata HOM05D006482 ORTHO05D008149 2.3e-21 105.1 73 75.3
Carub.0008s1398 Capsella rubella HOM05D006482 ORTHO05D008149 3.8e-21 104.4 73 75.3
Glyma.04G230700 Glycine max HOM05D006482 ORTHO05D008149 5.0e-21 104.0 73 71.2
Lj1g0026941 Lotus japonicus HOM05D006482 ORTHO05D008149 6.6e-21 103.6 73 72.6
Thhalv10015198m.g Eutrema salsugineum HOM05D006482 ORTHO05D008149 8.6e-21 103.2 73 74.0
Potri.012G022900 Populus trichocarpa HOM05D006482 ORTHO05D008149 8.6e-21 103.2 73 72.6
AT5G53650 Arabidopsis thaliana HOM05D006482 ORTHO05D008149 1.1e-20 102.8 73 74.0
Phvul.009G047100 Phaseolus vulgaris HOM05D006482 ORTHO05D008149 1.1e-20 102.8 73 69.9
CiPaw.05G203100 Carya illinoinensis HOM05D006482 ORTHO05D008149 1.5e-20 102.4 73 72.6
Psat5g073480 Pisum sativum HOM05D006482 ORTHO05D008149 1.5e-20 102.4 73 71.2
PGR142G0199 Punica granatum HOM05D006482 ORTHO05D008149 1.5e-20 102.4 73 68.5
A03p15030 Brassica napus HOM05D006482 ORTHO05D008149 1.9e-20 102.1 66 77.3
BraA03t10797Z Brassica rapa HOM05D006482 ORTHO05D008149 1.9e-20 102.1 66 77.3
Dinv29224 Davidia involucrata HOM05D006482 ORTHO05D008149 1.9e-20 102.1 65 76.9
Sp6g15770 Schrenkiella parvula HOM05D006482 ORTHO05D008149 1.9e-20 102.1 73 72.6
Eucgr.K00422 Eucalyptus grandis HOM05D006482 ORTHO05D008149 2.5e-20 101.7 73 69.9
TWI14G0741 Tripterygium wilfordii HOM05D006482 ORTHO05D008149 2.5e-20 101.7 68 75.0
Nn3g18841 Nelumbo nucifera HOM05D006482 ORTHO05D008149 3.3e-20 101.3 73 72.6
C03p17520 Brassica napus HOM05D006482 ORTHO05D008149 5.5e-20 100.5 66 75.8
BolC3t14165H Brassica oleracea HOM05D006482 ORTHO05D008149 5.5e-20 100.5 66 75.8
CARHR266810 Cardamine hirsuta HOM05D006482 ORTHO05D008149 5.5e-20 100.5 73 71.2
arahy.Tifrunner.gnm1.ann1.ZIU4UI Arachis hypogaea HOM05D006482 ORTHO05D008149 7.2e-20 100.1 73 67.1
TAR374G1512 Trochodendron aralioides HOM05D006482 ORTHO05D008149 7.2e-20 100.1 73 71.2
arahy.Tifrunner.gnm1.ann1.CVH3M3 Arachis hypogaea HOM05D006482 ORTHO05D008149 9.5e-20 99.8 73 67.1
EL10Ac3g05199 Beta vulgaris HOM05D006482 ORTHO05D008149 9.5e-20 99.8 73 68.5
BcaC01g06263 Brassica carinata HOM05D006482 ORTHO05D008149 9.5e-20 99.8 66 75.8
TWI39G0373 Tripterygium wilfordii HOM05D006482 ORTHO05D008149 9.5e-20 99.8 73 69.9
TAR629G1047 Trochodendron aralioides HOM05D006482 ORTHO05D008149 9.5e-20 99.8 73 72.6
BcaB01g04252 Brassica carinata HOM05D006482 ORTHO05D008149 1.6e-19 99.0 66 74.2
CSS0017170 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 2.1e-19 98.6 73 68.5
CANSAT21G0227 Cannabis sativa HOM05D006482 ORTHO05D008149 2.1e-19 98.6 73 68.5
Lalb_Chr23g0271851 Lupinus albus HOM05D006482 ORTHO05D008149 2.1e-19 98.6 73 69.9
Medtr3g092270 Medicago truncatula HOM05D006482 ORTHO05D008149 3.6e-19 97.8 66 74.2
PSO063G1999 Papaver somniferum HOM05D006482 ORTHO05D008149 3.6e-19 97.8 73 69.9
Rhsim03G0214200 Rhododendron simsii HOM05D006482 ORTHO05D008149 4.7e-19 97.4 73 67.1
TPR.G14847 Trifolium pratense HOM05D006482 ORTHO05D008149 4.7e-19 97.4 65 72.3
Lalb_Chr11g0067291 Lupinus albus HOM05D006482 ORTHO05D008149 6.1e-19 97.1 72 66.7
Oeu010737.1 Olea europaea HOM05D006482 ORTHO05D008149 6.1e-19 97.1 73 65.8
Sc19g0000660 Simmondsia chinensis HOM05D006482 ORTHO05D008149 6.1e-19 97.1 70 71.4
Glyma.04G154600 Glycine max HOM05D006482 ORTHO05D008149 8.0e-19 96.7 69 71.0
Sc13g0010170 Simmondsia chinensis HOM05D006482 ORTHO05D008149 8.0e-19 96.7 73 64.4
Gohir.D12G247600 Gossypium hirsutum HOM05D006482 ORTHO05D008149 1.4e-18 95.9 73 74.0
Ah.13g070630 Amaranthus hybridus HOM05D006482 ORTHO05D008149 1.8e-18 95.5 74 68.9
A02p10930 Brassica napus HOM05D006482 ORTHO05D008149 2.3e-18 95.1 66 72.7
vmacro06428 Vaccinium macrocarpon HOM05D006482 ORTHO05D008149 4.0e-18 94.4 73 64.4
BcaC03g14399 Brassica carinata HOM05D006482 ORTHO05D008149 6.8e-18 93.6 66 71.2
C02p18140 Brassica napus HOM05D006482 ORTHO05D008149 6.8e-18 93.6 66 71.2
BolC2t07944H Brassica oleracea HOM05D006482 ORTHO05D008149 6.8e-18 93.6 66 71.2
Hund21041 Selenicereus undatus HOM05D006482 ORTHO05D008149 6.8e-18 93.6 77 67.5
BraA02t06158Z Brassica rapa HOM05D006482 ORTHO05D008149 8.9e-18 93.2 66 71.2
Sed0025475 Sechium edule HOM05D006482 ORTHO05D008149 8.9e-18 93.2 73 63.0
Hund09702 Selenicereus undatus HOM05D006482 ORTHO05D008149 8.9e-18 93.2 73 64.4
BcaB05g22064 Brassica carinata HOM05D006482 ORTHO05D008149 1.2e-17 92.8 66 69.7
MD07G1297700 Malus domestica HOM05D006482 ORTHO05D008149 1.2e-17 92.8 99 57.6
CsaV3_5G000030 Cucumis sativus L. HOM05D006482 ORTHO05D008149 4.4e-17 90.9 73 63.0
Hma1.2p1_0456F.1_g156710 Hydrangea macrophylla HOM05D006482 ORTHO05D008149 4.4e-17 90.9 73 64.4
CDE09G1364 Ceratophyllum demersum HOM05D001294 ORTHO05D001178 5.7e-17 90.5 69 66.7
ClCG01G000130 Citrullus lanatus HOM05D006482 ORTHO05D008149 7.5e-17 90.1 73 61.6
Migut.E00300 Erythranthe guttata HOM05D006482 ORTHO05D008149 1.3e-16 89.4 74 68.9
Actinidia27284 Actinidia chinensis HOM05D000567 ORTHO05D000767 1.7e-16 89.0 73 64.4
Dinv18742 Davidia involucrata HOM05D006482 ORTHO05D008149 1.7e-16 89.0 68 64.7
Duzib084G1447 Durio zibethinus HOM05D006482 ORTHO05D008149 1.7e-16 89.0 63 74.6
MELO3C005924.2 Cucumis melo HOM05D006482 ORTHO05D008149 2.2e-16 88.6 73 61.6
Nitab4.5_0002720g0020 Nicotiana tabacum HOM05D006482 ORTHO05D008149 2.8e-16 88.2 70 62.9
Nitab4.5_0008141g0050 Nicotiana tabacum HOM05D006482 ORTHO05D008149 3.7e-16 87.8 72 61.1
Lsat_1_v5_gn_6_10060 Lactuca sativa HOM05D006482 ORTHO05D008149 4.9e-16 87.4 73 61.6
SalBow3G2365 Salvia bowleyana HOM05D006482 ORTHO05D008149 4.9e-16 87.4 74 64.9
PGSC0003DMG400012236 Solanum tuberosum HOM05D006482 ORTHO05D008149 8.3e-16 86.7 73 60.3
ECA233G2670 Erigeron canadensis HOM05D006482 ORTHO05D008149 1.4e-15 85.9 73 61.6
Glyma.06G134500 Glycine max HOM05D006482 ORTHO05D008149 2.4e-15 85.1 73 61.6
AUR62035606 Chenopodium quinoa HOM05D006482 ORTHO05D008149 1.2e-14 82.8 96 53.1
Sopen08g031390 Solanum pennellii HOM05D006482 ORTHO05D008149 1.6e-14 82.4 73 56.2
CSS0001288 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 2.0e-14 82.0 73 61.6
Solyc08g083200.3 Solanum lycopersicum HOM05D006482 ORTHO05D008149 2.0e-14 82.0 73 56.2
CiPaw.06G042200 Carya illinoinensis HOM05D006482 ORTHO05D008149 2.7e-14 81.6 73 56.2
HanXRQChr07g0192381 Helianthus annuus HOM05D006482 ORTHO05D008149 2.7e-14 81.6 73 57.5
unitig_699.g19497 Utricularia gibba HOM05D006482 ORTHO05D008149 4.6e-14 80.9 70 58.6
Sed0001965 Sechium edule HOM05D006482 ORTHO05D008149 1.3e-13 79.3 69 56.5
CSS0049934 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 2.3e-13 78.6 73 60.3
Peaxi162Scf00074g00224 Petunia axillaris HOM05D006482 ORTHO05D008149 5.0e-13 77.4 73 57.5
QL09p007382 Quercus lobata HOM05D006482 ORTHO05D008149 6.6e-13 77.0 142 40.1
Sabra12G0010900 Salix brachista HOM05D006482 ORTHO05D008149 8.6e-13 76.6 132 40.2
Cc08_g16820 Coffea canephora HOM05D006482 ORTHO05D008149 5.6e-12 73.9 71 53.5
SEGI_31465 Sequoiadendron giganteum HOM05D006482 ORTHO05D008149 4.7e-11 70.9 65 58.5
CDE11G0870 Ceratophyllum demersum HOM05D006482 ORTHO05D008149 1.4e-10 69.3 103 43.7
Haze_00279 Corylus avellana HOM05D006482 ORTHO05D008149 1.8e-10 68.9 41 78.0
HPP92_020659 Vanilla planifolia HOM05D001695 ORTHO05D002735 1.8e-10 68.9 67 53.7
CSS0015195 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 2.3e-10 68.6 73 52.1
CSS0007382 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 4.0e-10 67.8 69 53.6
CSS0018303 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 4.0e-10 67.8 46 67.4
AUR62006020 Chenopodium quinoa HOM05D006482 ORTHO05D008149 4.0e-10 67.8 42 78.6
FAN17G0467 Fragaria x ananassa HOM05D006482 ORTHO05D008149 4.0e-10 67.8 41 78.0
Os05g0535700 Oryza sativa ssp. japonica HOM05D006482 ORTHO05D008149 4.0e-10 67.8 75 49.3
Eucgr.E02459 Eucalyptus grandis HOM05D006482 ORTHO05D008149 1.5e-09 65.9 55 58.2
vmacro13845 Vaccinium macrocarpon HOM05D006482 ORTHO05D008149 3.4e-09 64.7 45 71.1
Rhsim07G0077300 Rhododendron simsii HOM05D006482 ORTHO05D008149 1.7e-08 62.4 42 73.8
ATR0579G147 Amborella trichopoda HOM05D006482 ORTHO05D008149 2.2e-08 62.0 42 64.3
Zm00001eb294050 Zea mays HOM05D006482 ORTHO05D008149 3.7e-08 61.2 72 50.0
DCAR_006554 Daucus carota HOM05D006482 ORTHO05D008149 9.2e-07 56.6 41 68.3
Os01g0589100 Oryza sativa ssp. japonica HOM05D006482 ORTHO05D008149 9.2e-07 56.6 65 46.2
Zm00001eb160720 Zea mays HOM05D006482 ORTHO05D008149 9.2e-07 56.6 71 46.5
FvH4_4g29090 Fragaria vesca HOM05D000768 ORTHO05D046510 1.6e-06 55.8 48 62.5


User provided reference genes

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