Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 9.7e-184 646.7 342 100.0
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 8.3e-159 563.9 364 82.7
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 3.9e-156 555.1 342 86.3
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.2e-152 543.5 342 81.0
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.4e-150 536.6 342 81.3
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.6e-144 515.8 345 78.8
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 3.4e-144 515.4 345 78.8
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 5.8e-144 514.6 342 78.4
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 3.7e-143 511.9 345 78.3
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 6.2e-138 494.6 337 76.0
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 3.8e-135 485.3 338 77.2
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 6.4e-135 484.6 340 73.8
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.1e-134 483.8 338 77.2
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 7.1e-134 481.1 338 76.3
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 2.7e-133 479.2 293 79.9
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 3.9e-132 475.3 305 76.4
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 1.1e-131 473.8 293 78.2
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 1.5e-131 473.4 346 69.4
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 2.5e-131 472.6 294 76.2
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 4.3e-131 471.9 337 70.0
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 4.3e-131 471.9 337 70.0
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 2.8e-130 469.2 338 72.2
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 1.4e-129 466.8 296 74.3
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 1.4e-129 466.8 294 74.5
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 1.8e-129 466.5 292 75.0
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 5.2e-129 464.9 305 75.1
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 6.9e-129 464.5 305 75.1
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 9.9e-128 460.7 291 75.9
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 1.3e-127 460.3 291 75.6
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 2.2e-127 459.5 291 75.6
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 2.9e-127 459.1 305 71.8
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 3.8e-127 458.8 342 66.7
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 6.4e-127 458.0 338 67.5
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 1.1e-126 457.2 309 71.5
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 1.9e-126 456.4 340 67.1
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.2e-126 455.7 297 75.1
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 3.2e-126 455.7 300 73.3
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 7.1e-126 454.5 291 74.6
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 7.1e-126 454.5 333 67.3
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 9.3e-126 454.1 297 75.8
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.6e-125 453.4 297 75.4
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 2.7e-125 452.6 291 73.9
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 2.7e-125 452.6 310 70.0
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 7.8e-125 451.1 310 70.6
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 1.0e-124 450.7 340 67.1
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 1.3e-124 450.3 344 66.6
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.7e-124 449.9 297 73.4
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 3.0e-124 449.1 296 74.3
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 3.0e-124 449.1 296 74.3
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 3.0e-124 449.1 291 73.5
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 3.9e-124 448.7 294 73.8
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 8.7e-124 447.6 297 70.7
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 1.1e-123 447.2 337 66.2
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 1.9e-123 446.4 348 67.0
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 4.3e-123 445.3 292 74.7
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 4.3e-123 445.3 290 74.1
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 5.6e-123 444.9 295 72.9
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 7.3e-123 444.5 293 73.0
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 7.3e-123 444.5 296 72.3
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 9.6e-123 444.1 311 69.8
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 2.1e-122 443.0 355 63.9
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 2.1e-122 443.0 288 75.3
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 2.1e-122 443.0 293 74.1
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 3.6e-122 442.2 291 72.2
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 6.2e-122 441.4 291 71.8
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 6.2e-122 441.4 291 71.8
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 6.2e-122 441.4 295 72.2
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 1.8e-121 439.9 293 72.0
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 1.8e-121 439.9 293 72.0
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 1.8e-121 439.9 293 72.0
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 2.4e-121 439.5 301 70.4
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 5.3e-121 438.3 304 71.1
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 5.3e-121 438.3 293 72.0
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 5.3e-121 438.3 347 71.5
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 6.9e-121 438.0 292 71.9
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 9.0e-121 437.6 297 71.0
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 1.5e-120 436.8 345 67.5
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 2.6e-120 436.0 291 72.5
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 7.6e-120 434.5 296 72.3
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 7.6e-120 434.5 297 70.7
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 9.9e-120 434.1 297 71.7
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.7e-119 433.3 342 64.6
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 2.2e-119 433.0 295 72.5
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 2.9e-119 432.6 294 71.4
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 3.8e-119 432.2 304 71.1
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 4.9e-119 431.8 294 70.1
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 1.1e-118 430.6 306 69.0
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 2.4e-118 429.5 292 72.3
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 3.5e-117 425.6 294 71.1
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 1.1e-115 420.6 343 63.3
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.1e-115 420.6 344 65.1
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 5.6e-115 418.3 286 72.0
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 9.6e-115 417.5 292 68.5
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 2.1e-114 416.4 303 69.0
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 3.7e-114 415.6 309 67.0
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.4e-113 413.7 293 67.2
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.8e-113 413.3 348 60.6
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 3.1e-113 412.5 294 68.0
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 7.6e-112 407.9 298 66.1
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 1.7e-111 406.8 302 65.6
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.1e-110 404.1 297 67.7
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 1.1e-110 404.1 257 73.2
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 4.6e-109 398.7 330 62.7
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 3.9e-108 395.6 292 65.8
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 2.1e-106 389.8 332 58.7
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 6.2e-106 388.3 295 62.4
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 3.1e-105 386.0 268 70.1
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.2e-104 384.0 292 64.7
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 6.5e-103 378.3 314 61.8
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.1e-102 377.5 297 65.7
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 1.2e-101 374.0 297 66.0
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.1e-97 360.9 347 53.0
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 4.2e-94 349.0 290 59.0
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 3.1e-89 332.8 286 56.3
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 1.5e-88 330.5 354 57.6
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 1.4e-86 323.9 272 60.7
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 3.2e-86 322.8 304 53.0
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 7.9e-85 318.2 264 64.8
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 5.1e-84 315.5 260 59.6
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.2e-77 294.3 322 49.1
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.4e-76 290.8 196 73.0
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 1.7e-74 283.9 358 42.2
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.9e-70 270.4 197 69.5
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 3.2e-70 269.6 290 44.8
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 6.1e-69 265.4 272 54.0
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 8.0e-69 265.0 293 44.4
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 1.2e-67 261.2 296 44.3
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 2.0e-67 260.4 288 43.1
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 2.0e-64 250.4 159 72.3
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 3.8e-63 246.1 260 48.1
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 4.4e-59 232.6 175 65.1
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 3.5e-48 196.4 222 46.4
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 7.5e-43 178.7 278 36.3
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 4.3e-38 162.9 84 89.3
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 8.9e-36 155.2 119 61.3
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 5.1e-31 139.4 98 69.4
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 1.9e-30 137.5 114 61.4
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 6.8e-28 129.0 92 66.3
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 6.8e-28 129.0 92 66.3
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 1.2e-27 128.3 73 80.8
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 7.5e-27 125.6 104 60.6
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 1.4e-25 121.3 76 75.0
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 2.1e-24 117.5 68 77.9
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 7.8e-24 115.5 77 70.1
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 2.3e-23 114.0 87 65.5
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 9.5e-22 108.6 93 52.7
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 9.5e-22 108.6 172 37.8
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.0e-19 100.9 77 58.4
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 4.6e-16 89.7 60 68.3
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 7.8e-16 89.0 58 74.1
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.9e-14 84.3 64 64.1
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 6.9e-12 75.9 46 73.9
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 3.4e-11 73.6 98 45.9
Hund22592 Selenicereus undatus HOM05D004821 ORTHO05D005711 4.2e-09 66.6 72 44.4
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 1.6e-08 64.7 53 54.7
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 3.5e-08 63.5 92 34.8


User provided reference genes

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