Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 0.0e+00 1151.0 583 100.0
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 1.2e-266 922.9 654 74.3
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 3.5e-266 921.4 577 80.2
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 3.5e-266 921.4 579 80.7
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 3.0e-265 918.3 581 80.2
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 5.7e-208 728.0 579 64.1
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 3.9e-201 705.3 572 61.9
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 3.1e-198 695.7 586 61.3
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 7.7e-197 691.0 613 60.4
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 5.0e-196 688.3 577 61.7
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 1.6e-194 683.3 598 60.7
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 1.6e-194 683.3 580 61.6
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 3.3e-192 675.6 585 60.2
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.3e-192 675.6 597 60.3
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 4.1e-190 668.7 578 60.4
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 7.2e-187 657.9 587 58.6
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 5.7e-184 648.3 579 58.7
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 4.8e-183 645.2 578 58.7
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 4.8e-183 645.2 584 57.5
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 4.1e-182 642.1 614 56.8
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 2.0e-181 639.8 580 58.6
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 5.9e-181 638.3 589 57.7
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 1.9e-179 633.3 572 57.9
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 1.3e-175 620.5 572 56.6
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 2.2e-175 619.8 574 57.1
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 7.7e-173 611.3 592 55.6
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 1.7e-172 610.1 587 55.0
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 2.5e-171 606.3 577 57.0
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.6e-170 603.6 580 55.9
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 2.1e-170 603.2 603 53.7
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 3.0e-169 599.4 586 55.5
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 1.4e-166 590.5 586 54.3
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 5.9e-165 585.1 582 54.5
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 2.9e-164 582.8 585 54.5
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 9.5e-163 577.8 570 52.8
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 2.1e-162 576.6 569 52.2
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 2.1e-162 576.6 587 51.1
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 3.6e-162 575.9 576 53.3
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 4.7e-162 575.5 622 51.4
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 6.1e-162 575.1 582 53.3
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 8.0e-162 574.7 604 53.1
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 1.8e-161 573.5 567 52.7
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 2.3e-161 573.2 582 52.9
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 8.9e-161 571.2 597 51.9
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 1.2e-160 570.9 577 52.5
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 1.2e-160 570.9 574 52.1
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 1.5e-160 570.5 575 53.7
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 2.6e-160 569.7 587 52.1
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 3.4e-160 569.3 587 52.0
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 4.4e-160 568.9 571 53.2
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 5.7e-160 568.5 615 52.8
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 9.8e-160 567.8 587 52.0
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 2.9e-159 566.2 626 50.5
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 1.4e-158 563.9 650 49.5
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 1.8e-158 563.5 584 50.3
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 5.4e-158 562.0 576 52.3
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 5.4e-158 562.0 589 53.7
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 5.4e-158 562.0 582 51.2
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 1.2e-157 560.8 614 51.1
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 7.8e-157 558.1 578 51.0
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 1.7e-156 557.0 590 50.3
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 1.1e-155 554.3 654 48.5
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 1.9e-155 553.5 614 50.8
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.9e-155 553.5 614 50.8
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 2.1e-154 550.1 581 52.2
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 6.2e-154 548.5 574 51.0
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 5.2e-153 545.4 566 50.7
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 6.8e-153 545.0 654 48.6
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 1.5e-152 543.9 572 52.1
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 2.0e-152 543.5 511 56.4
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 3.4e-152 542.7 582 50.5
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 1.3e-151 540.8 575 51.5
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 3.7e-151 539.3 601 51.2
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 1.9e-150 537.0 578 51.7
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 4.1e-150 535.8 569 52.2
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 5.4e-150 535.4 476 57.8
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 2.7e-149 533.1 566 51.4
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 7.8e-149 531.6 512 55.9
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 2.3e-148 530.0 578 51.2
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 1.9e-147 526.9 593 49.6
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 2.1e-146 523.5 574 51.2
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 2.8e-146 523.1 507 54.4
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 2.3e-145 520.0 580 50.5
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 4.0e-145 519.2 427 62.3
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 8.9e-145 518.1 574 49.7
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 2.0e-144 516.9 580 49.8
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 2.0e-144 516.9 617 48.1
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 3.4e-144 516.2 619 48.0
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 7.1e-142 508.4 663 47.1
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 9.2e-142 508.1 495 55.2
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 1.3e-140 504.2 510 54.1
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 7.3e-139 498.4 427 58.3
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 5.2e-137 492.3 609 47.0
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 2.1e-133 480.3 574 46.5
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 7.6e-128 461.8 572 46.9
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 9.9e-128 461.5 486 52.1
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 9.3e-126 454.9 537 49.5
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 4.6e-117 426.0 598 43.8
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 1.9e-115 420.6 579 42.7
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 2.4e-113 413.7 602 41.9
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 5.3e-113 412.5 503 47.7
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 4.2e-110 402.9 578 40.8
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 1.9e-107 394.0 331 62.8
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 3.1e-105 386.7 466 47.4
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 3.1e-105 386.7 696 37.2
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 9.3e-102 375.2 515 45.8
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 1.6e-101 374.4 350 56.6
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 3.5e-101 373.2 502 45.2
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 2.8e-98 363.6 343 58.0
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 1.9e-94 350.9 441 41.3
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 2.5e-94 350.5 355 54.6
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 4.6e-93 346.3 443 42.0
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 6.3e-90 335.9 451 41.0
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 4.6e-85 319.7 492 39.0
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 1.0e-84 318.5 367 50.7
Lalb_Chr05g0212031 Lupinus albus HOM05D003812 ORTHO05D004393 1.1e-81 308.5 307 53.4
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 1.4e-81 308.1 246 62.2
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 6.5e-79 299.3 268 60.4
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 2.0e-75 287.7 299 51.8
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 3.7e-74 283.5 246 58.1
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 8.2e-74 282.3 329 49.8
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 2.2e-71 274.2 284 53.2
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 6.1e-69 266.2 315 46.7
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 2.3e-68 264.2 275 51.3
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 5.2e-68 263.1 308 47.7
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.5e-67 261.5 252 54.8
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 1.4e-60 238.4 243 53.5
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 1.2e-59 235.3 239 53.6
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 1.3e-58 231.9 248 47.6
Hma1.2p1_0381F.1_g140060 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 1.6e-53 214.9 158 64.6
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 2.1e-53 214.5 257 48.2
Cc06_g19240 Coffea canephora HOM05D003812 ORTHO05D004393 5.2e-52 209.9 132 71.2
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 9.8e-51 205.7 194 56.7
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 4.9e-50 203.4 380 39.7
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.6e-45 188.3 184 54.3
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.8e-44 184.9 184 53.8
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 1.8e-44 184.9 184 55.4
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.0e-43 181.4 184 52.7
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.0e-43 181.4 184 53.3
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.0e-43 181.4 184 53.3
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.0e-43 181.4 184 53.3
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.6e-43 181.0 166 55.4
HanXRQChr17g0553321 Helianthus annuus HOM05D003812 ORTHO05D004393 2.6e-43 181.0 225 48.9
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 2.6e-43 181.0 353 34.8
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 4.9e-42 176.8 234 44.4
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 1.4e-41 175.3 215 48.8
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 1.7e-39 168.3 165 53.9
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 1.5e-35 155.2 631 23.1
Hund12301 Selenicereus undatus HOM05D003812 ORTHO05D004393 3.7e-34 150.6 227 42.7
Sc13g0007560 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.9e-33 148.3 161 50.9
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 2.5e-30 137.9 188 46.8
ATR0580G030 Amborella trichopoda HOM05D003812 ORTHO05D004393 3.6e-29 134.0 242 37.2
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.2e-29 133.3 171 44.4
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 6.2e-29 133.3 146 47.9
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 1.7e-26 125.2 133 53.4
arahy.Tifrunner.gnm1.ann1.NBB910 Arachis hypogaea HOM05D003812 ORTHO05D004393 6.4e-26 123.2 102 58.8
arahy.Tifrunner.gnm1.ann1.C22IND Arachis hypogaea HOM05D003812 ORTHO05D004393 1.1e-25 122.5 97 59.8
arahy.Tifrunner.gnm1.ann1.WBRQ5K Arachis hypogaea HOM05D003812 ORTHO05D004393 4.1e-25 120.6 102 57.8
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 3.3e-22 110.9 100 51.0
Nn1g08161 Nelumbo nucifera HOM05D003812 ORTHO05D004393 1.1e-20 105.9 185 43.2
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 1.9e-17 95.1 149 40.3
Hund12275 Selenicereus undatus HOM05D003812 ORTHO05D004393 1.9e-17 95.1 193 37.3
arahy.Tifrunner.gnm1.ann1.8MB3N8 Arachis hypogaea HOM05D003812 ORTHO05D004393 2.3e-15 88.2 82 53.7
arahy.Tifrunner.gnm1.ann1.SF8VIF Arachis hypogaea HOM05D003812 ORTHO05D004393 5.1e-15 87.0 79 54.4
SEGI_01468 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 8.6e-15 86.3 69 53.6
Hma1.2p1_0381F.1_g140070 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 1.6e-13 82.0 160 38.1
vmacro06692 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.6e-13 82.0 77 57.1
Cc06_g19280 Coffea canephora HOM05D003812 ORTHO05D004393 5.2e-12 77.0 93 49.5
FAN20G1426 Fragaria x ananassa HOM05D003812 ORTHO05D004393 9.0e-12 76.3 113 46.0
vmacro06690 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 3.4e-11 74.3 45 66.7
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 4.9e-10 70.5 270 29.3
Cc00_g35850 Coffea canephora HOM05D003812 ORTHO05D004393 1.4e-09 68.9 120 40.8
FvH4_2g23680 Fragaria vesca HOM05D003812 ORTHO05D004393 9.3e-09 66.2 117 40.2
SEGI_03594 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 4.6e-08 63.9 43 65.1
Glyma.01G161051 Glycine max HOM05D003812 ORTHO05D004393 6.0e-08 63.5 96 37.5
BolC8t48198H Brassica oleracea HOM05D003812 ORTHO05D004393 1.7e-07 62.0 35 74.3
PGSC0003DMG400007789 Solanum tuberosum HOM05D003812 ORTHO05D004393 5.1e-07 60.5 153 32.0
Sc25g0002350 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.9e-06 58.5 47 51.1
FAN15G1786 Fragaria x ananassa HOM05D003812 ORTHO05D004393 5.6e-06 57.0 41 56.1


User provided reference genes

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