Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G202500 Theobroma cacao HOM05D003086 ORTHO05D003347 2.0e-39 165.2 81 100.0
COL.COLO4_16806 Corchorus olitorius HOM05D003086 ORTHO05D003347 2.0e-34 148.7 82 91.5
Gohir.D12G249000 Gossypium hirsutum HOM05D003086 ORTHO05D003347 9.5e-29 129.8 83 79.5
Gorai.008G267200 Gossypium raimondii HOM05D003086 ORTHO05D003347 9.5e-29 129.8 83 79.5
Gohir.A12G248300 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.3e-27 125.2 82 82.9
Gorai.007G015800 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.4e-24 115.2 83 74.7
Gohir.D11G015350 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.1e-24 114.4 82 74.4
Gohir.A11G015250 Gossypium hirsutum HOM05D003086 ORTHO05D003347 8.6e-22 106.7 83 71.1
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 5.6e-21 104.0 90 68.9
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 7.3e-21 103.6 89 67.4
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 1.6e-20 102.4 90 67.8
Gohir.A09G186001 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.8e-20 101.7 81 70.4
Gohir.D09G180500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.8e-20 101.7 81 70.4
Gorai.006G202500 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.8e-20 101.7 81 70.4
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 3.7e-17 91.3 90 61.1
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 5.4e-16 87.4 92 57.6
Manes.01G039600 Manihot esculenta HOM05D003086 ORTHO05D003347 8.6e-14 80.1 82 59.8
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 8.6e-14 80.1 92 53.3
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 2.5e-13 78.6 100 53.0
CANSAT21G0721 Cannabis sativa HOM05D003086 ORTHO05D003347 9.5e-13 76.6 86 53.5
Lalb_Chr23g0271671 Lupinus albus HOM05D003086 ORTHO05D003347 9.5e-13 76.6 89 52.8
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 2.8e-12 75.1 65 61.5
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 2.8e-12 75.1 105 47.6
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.8e-12 75.1 74 56.8
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 3.6e-12 74.7 87 54.0
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 4.7e-12 74.3 76 53.9
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 6.2e-12 73.9 60 71.7
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 6.2e-12 73.9 78 55.1
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 1.8e-11 72.4 77 59.7
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 4.0e-11 71.2 44 75.0
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 5.2e-11 70.9 69 58.0
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 5.2e-11 70.9 88 54.5
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 5.2e-11 70.9 72 56.9
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 5.2e-11 70.9 64 59.4
Actinidia18664 Actinidia chinensis HOM05D003086 ORTHO05D003347 6.8e-11 70.5 78 52.6
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 6.8e-11 70.5 88 51.1
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 6.8e-11 70.5 51 66.7
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 6.8e-11 70.5 61 59.0
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.2e-10 69.7 59 62.7
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.2e-10 69.7 59 62.7
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 1.2e-10 69.7 74 59.5
RcHm_v2.0_Chr1g0381731 Rosa chinensis HOM05D003086 ORTHO05D003347 1.2e-10 69.7 90 55.6
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 1.2e-10 69.7 70 55.7
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.2e-10 69.7 78 57.7
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.5e-10 69.3 47 70.2
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 2.0e-10 68.9 69 55.1
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 2.0e-10 68.9 95 47.4
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.0e-10 68.9 46 71.7
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 2.0e-10 68.9 71 59.2
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 2.6e-10 68.6 71 54.9
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 2.6e-10 68.6 47 70.2
Sabra14G0073900 Salix brachista HOM05D003086 ORTHO05D003347 2.6e-10 68.6 51 66.7
FAN03G2739 Fragaria x ananassa HOM05D002608 ORTHO05D013420 3.4e-10 68.2 91 52.7
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 3.4e-10 68.2 61 62.3
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 3.4e-10 68.2 51 64.7
Cc02_g01250 Coffea canephora HOM05D003086 ORTHO05D003347 4.4e-10 67.8 82 52.4
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 4.4e-10 67.8 46 76.1
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 4.4e-10 67.8 47 68.1
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 7.5e-10 67.0 47 68.1
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 9.9e-10 66.6 60 58.3
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 9.9e-10 66.6 81 45.7
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 9.9e-10 66.6 77 51.9
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 1.3e-09 66.2 73 54.8
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 1.3e-09 66.2 73 54.8
Aqoxy7G00049 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 1.7e-09 65.9 44 70.5
FAN10G1862 Fragaria x ananassa HOM05D037066 ORTHO05D003347 1.7e-09 65.9 91 51.6
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 2.2e-09 65.5 71 57.7
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.9e-09 65.1 46 69.6
SalBow3G3175 Salvia bowleyana HOM05D003086 ORTHO05D003347 2.9e-09 65.1 52 63.5
unitig_85.g27205 Utricularia gibba HOM05D003086 ORTHO05D003347 4.9e-09 64.3 66 51.5
CDE02G0840 Ceratophyllum demersum HOM05D003086 ORTHO05D003347 6.4e-09 63.9 46 67.4
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 6.4e-09 63.9 67 55.2
Medtr3g491900 Medicago truncatula HOM05D003086 ORTHO05D003347 6.4e-09 63.9 42 69.0
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 8.3e-09 63.5 76 51.3
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 1.1e-08 63.2 71 52.1
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 1.1e-08 63.2 50 62.0
CAN.G1415.17 Capsicum annuum HOM05D003086 ORTHO05D003347 1.4e-08 62.8 75 50.7
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 1.4e-08 62.8 45 66.7
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 1.4e-08 62.8 48 66.7
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 1.9e-08 62.4 48 68.8
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 1.9e-08 62.4 49 67.3
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 1.9e-08 62.4 76 47.4
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 2.4e-08 62.0 45 66.7
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 2.4e-08 62.0 45 66.7
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 2.4e-08 62.0 60 58.3
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 2.4e-08 62.0 47 63.8
Psat4g005000 Pisum sativum HOM05D003086 ORTHO05D003347 3.2e-08 61.6 43 62.8
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 3.2e-08 61.6 53 62.3
TPR.G33614 Trifolium pratense HOM05D003086 ORTHO05D003347 3.2e-08 61.6 43 62.8
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 4.1e-08 61.2 46 67.4
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 4.1e-08 61.2 45 71.1
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 4.1e-08 61.2 48 62.5
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 4.1e-08 61.2 48 66.7
HPP92_014802 Vanilla planifolia HOM05D003086 ORTHO05D003347 4.1e-08 61.2 72 47.2
CSS0003230 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 5.4e-08 60.8 76 47.4
CSS0024306 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 5.4e-08 60.8 76 47.4
Nitab4.5_0002780g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 5.4e-08 60.8 75 50.7
Ah.13g070480 Amaranthus hybridus HOM05D003086 ORTHO05D003347 7.1e-08 60.5 45 64.4
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 7.1e-08 60.5 45 64.4
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 9.2e-08 60.1 55 54.5
Sopen03g022700 Solanum pennellii HOM05D003086 ORTHO05D003347 9.2e-08 60.1 76 48.7
PGSC0003DMG400018543 Solanum tuberosum HOM05D003086 ORTHO05D003347 9.2e-08 60.1 76 48.7
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 1.2e-07 59.7 51 58.8
FAN10G1789 Fragaria x ananassa HOM05D037066 ORTHO05D003347 1.6e-07 59.3 91 49.5
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 2.1e-07 58.9 45 62.2
Nitab4.5_0007100g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 2.1e-07 58.9 67 52.2
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 2.7e-07 58.5 87 41.4
Lj1g0020347 Lotus japonicus HOM05D003086 ORTHO05D003347 2.7e-07 58.5 81 44.4
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 3.5e-07 58.2 50 56.0
Ca_16727_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 3.5e-07 58.2 59 54.2
Migut.N01532 Erythranthe guttata HOM05D003086 ORTHO05D003347 3.5e-07 58.2 54 59.3
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 3.5e-07 58.2 75 46.7
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 3.5e-07 58.2 45 62.2
TPR.G3409 Trifolium pratense HOM05D003086 ORTHO05D003347 3.5e-07 58.2 85 40.0
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 6.0e-07 57.4 54 55.6
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 6.0e-07 57.4 76 44.7
SEGI_15730 Sequoiadendron giganteum HOM05D003086 ORTHO05D003347 6.0e-07 57.4 48 62.5
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 6.0e-07 57.4 54 51.9
EL10Ac3g05245 Beta vulgaris HOM05D003086 ORTHO05D003347 7.8e-07 57.0 48 58.3
FAN01G2353 Fragaria x ananassa HOM05D037066 ORTHO05D003347 7.8e-07 57.0 91 48.4
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 7.8e-07 57.0 45 64.4
AUR62006063 Chenopodium quinoa HOM05D003086 ORTHO05D003347 1.0e-06 56.6 45 60.0
AUR62035564 Chenopodium quinoa HOM05D003086 ORTHO05D003347 1.0e-06 56.6 45 60.0
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 1.0e-06 56.6 62 54.8
vmacro04593 Vaccinium macrocarpon HOM05D007433 ORTHO05D009199 1.0e-06 56.6 48 60.4
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 1.3e-06 56.2 74 43.2
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 1.3e-06 56.2 54 51.9
ATR0797G001 Amborella trichopoda HOM05D007433 ORTHO05D003347 1.7e-06 55.8 45 57.8
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 1.7e-06 55.8 74 43.2
Medtr8g099965 Medicago truncatula HOM05D003086 ORTHO05D003347 1.7e-06 55.8 87 40.2
Peaxi162Scf00740g00215 Petunia axillaris HOM05D003086 ORTHO05D003347 1.7e-06 55.8 49 61.2
Rhsim07G0217700 Rhododendron simsii HOM05D007433 ORTHO05D009199 1.7e-06 55.8 46 60.9
Prupe.2G191800 Prunus persica HOM05D014299 ORTHO05D017012 2.3e-06 55.5 78 44.9
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 3.0e-06 55.1 45 55.6
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 3.0e-06 55.1 74 43.2
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 3.9e-06 54.7 45 57.8
MBI16_g32085_MAGBIO Magnolia biondii HOM05D007433 ORTHO05D009199 3.9e-06 54.7 45 60.0
Nn6g34518 Nelumbo nucifera HOM05D007433 ORTHO05D009199 3.9e-06 54.7 48 58.3
Os10g0502100 Oryza sativa ssp. japonica HOM05D003086 ORTHO05D003347 3.9e-06 54.7 59 52.5
Sabra01G0063400 Salix brachista HOM05D003086 ORTHO05D003347 3.9e-06 54.7 74 44.6
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 3.9e-06 54.7 41 68.3
MD01G1084100 Malus domestica HOM05D014299 ORTHO05D017012 5.1e-06 54.3 60 55.0
MD14G1134500 Malus domestica HOM05D003086 ORTHO05D003347 5.1e-06 54.3 86 40.7
Sp6g06680 Schrenkiella parvula HOM05D003086 ORTHO05D003347 5.1e-06 54.3 45 60.0
HPP92_013003 Vanilla planifolia HOM05D003086 ORTHO05D003347 5.1e-06 54.3 47 59.6
CANSAT25G0221 Cannabis sativa HOM05D007433 ORTHO05D009199 6.6e-06 53.9 48 58.3
Thhalv10029101m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 8.6e-06 53.5 41 63.4


User provided reference genes

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