Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 3.9e-216 754.6 403 100.0
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.8e-198 694.5 403 90.3
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 4.8e-198 694.5 403 90.3
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 4.1e-197 691.4 398 91.2
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 3.4e-196 688.3 403 88.8
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 9.4e-194 680.2 418 84.7
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.7e-182 642.9 403 84.6
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 1.7e-182 642.9 403 84.6
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 8.5e-179 630.6 403 80.4
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 6.1e-177 624.4 404 80.2
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 2.3e-176 622.5 403 78.4
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 4.0e-176 621.7 406 79.3
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 3.3e-175 618.6 399 80.7
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 3.7e-174 615.1 404 77.2
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 1.1e-173 613.6 404 80.0
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.1e-173 613.6 403 82.1
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 1.8e-173 612.8 404 77.5
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 3.1e-173 612.1 404 79.2
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 3.1e-173 612.1 404 78.2
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.0e-171 607.1 404 78.2
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 1.0e-171 607.1 406 77.8
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 5.0e-171 604.7 404 77.2
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 1.9e-170 602.8 404 78.5
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 4.2e-170 601.7 406 77.3
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 5.5e-170 601.3 402 77.9
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 1.2e-169 600.1 403 75.7
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 6.1e-169 597.8 398 77.6
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 1.4e-168 596.7 405 76.3
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.8e-168 596.3 409 76.3
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 4.0e-168 595.1 405 75.6
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 4.0e-168 595.1 405 75.6
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 6.8e-168 594.3 409 76.0
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 5.7e-167 591.3 404 74.8
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 7.5e-167 590.9 409 75.3
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 1.3e-166 590.1 404 76.5
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 6.3e-166 587.8 403 73.7
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 1.1e-165 587.0 405 75.1
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 1.1e-165 587.0 409 74.3
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 1.4e-165 586.6 399 74.4
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 1.8e-165 586.3 406 73.9
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 2.4e-165 585.9 407 74.4
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 2.4e-165 585.9 406 75.1
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 2.4e-165 585.9 406 75.1
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 3.1e-165 585.5 405 73.6
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 4.1e-165 585.1 406 73.6
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 7.0e-165 584.3 402 74.9
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 1.2e-164 583.6 403 75.4
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 1.6e-164 583.2 403 73.7
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 2.0e-164 582.8 399 75.2
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 4.5e-164 581.6 404 73.5
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.0e-163 580.5 409 72.9
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.3e-163 580.1 404 75.7
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 1.7e-163 579.7 409 72.6
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 2.9e-163 578.9 409 72.9
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 3.8e-163 578.6 401 76.3
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 5.0e-163 578.2 402 74.9
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 5.0e-163 578.2 397 74.6
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 6.5e-163 577.8 408 73.8
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.1e-162 577.0 406 74.4
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 1.1e-162 577.0 406 72.7
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 2.5e-162 575.9 437 70.5
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 3.2e-162 575.5 401 75.8
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.2e-162 575.5 409 72.1
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 7.2e-162 574.3 406 73.9
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 1.6e-161 573.2 401 75.3
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 2.1e-161 572.8 408 73.5
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 2.1e-161 572.8 400 73.5
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 6.1e-161 571.2 388 75.3
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 6.1e-161 571.2 405 73.1
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 4.0e-160 568.5 403 74.4
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 1.2e-159 567.0 398 75.4
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 2.0e-159 566.2 409 70.9
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 5.7e-159 564.7 400 73.8
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 9.8e-159 563.9 402 72.9
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.3e-158 563.5 403 70.7
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 2.2e-158 562.8 406 71.9
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 4.9e-158 561.6 400 74.0
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 1.1e-157 560.5 411 71.5
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 3.1e-157 558.9 406 72.2
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 7.0e-157 557.8 402 72.6
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 1.2e-156 557.0 400 71.5
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 7.7e-156 554.3 399 71.4
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 2.9e-155 552.4 405 69.4
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 3.8e-155 552.0 406 71.7
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 5.0e-155 551.6 406 72.2
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 8.6e-155 550.8 401 71.6
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 3.3e-154 548.9 402 72.1
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 5.6e-154 548.1 405 72.3
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 2.1e-153 546.2 406 70.9
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 3.6e-153 545.4 406 70.7
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 4.7e-153 545.0 406 70.9
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 6.1e-153 544.7 412 70.4
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 3.0e-152 542.3 406 70.2
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 3.0e-152 542.3 404 69.3
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 3.0e-152 542.3 453 65.3
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 4.0e-152 542.0 406 68.0
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 8.9e-152 540.8 404 69.3
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 3.4e-151 538.9 403 69.0
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 5.7e-151 538.1 450 63.3
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 7.5e-151 537.7 410 69.0
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 7.5e-151 537.7 443 66.8
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.4e-149 533.5 406 69.0
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 3.2e-149 532.3 429 65.7
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 5.4e-149 531.6 406 69.0
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 3.5e-148 528.9 396 67.7
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 2.3e-147 526.2 406 67.2
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 3.0e-147 525.8 406 67.2
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 3.0e-147 525.8 401 65.6
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 5.0e-147 525.0 403 69.7
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 6.6e-147 524.6 401 69.6
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 6.8e-144 514.6 407 68.6
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 5.8e-143 511.5 403 68.2
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 1.3e-142 510.4 403 65.3
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 4.9e-142 508.4 403 66.3
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 1.3e-139 500.4 412 67.5
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 9.5e-138 494.2 399 63.7
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 1.6e-132 476.9 374 66.3
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 6.0e-132 474.9 403 59.8
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 7.1e-125 451.4 520 51.7
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 1.5e-122 443.7 332 71.1
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 4.3e-122 442.2 318 73.0
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 2.2e-118 429.9 293 74.7
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 1.2e-116 424.1 438 56.8
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 3.3e-114 416.0 373 59.2
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 2.8e-113 412.9 404 60.1
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 1.3e-110 404.1 403 53.3
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 4.9e-110 402.1 442 54.3
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 1.2e-103 380.9 404 51.7
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 1.2e-103 380.9 404 51.7
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 6.4e-102 375.2 406 58.4
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 1.3e-97 360.9 397 50.1
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 1.8e-91 340.5 405 49.4
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 2.7e-84 316.6 403 51.4
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 1.9e-77 293.9 203 75.9
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.2e-68 264.6 364 45.1
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 1.6e-63 247.7 429 38.9
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 1.6e-60 237.7 265 57.0
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.6e-60 237.7 309 44.3
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.0e-51 206.5 157 72.0
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.2e-41 174.1 136 72.8
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 1.5e-29 134.8 100 68.0
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 9.5e-29 132.1 93 71.0
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 3.1e-27 127.1 128 56.2
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 1.1e-24 118.6 416 28.6
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.9e-24 117.9 82 74.4
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 4.1e-24 116.7 105 55.2
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 3.0e-22 110.5 69 79.7
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.1e-21 108.6 73 72.6
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 7.3e-21 105.9 179 43.6
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 2.1e-20 104.4 436 26.8
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 1.5e-18 98.2 173 41.6
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 6.4e-17 92.8 450 24.2
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.1e-16 92.0 68 67.6
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 1.9e-13 81.3 366 26.0
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 5.8e-10 69.7 260 28.8
Rhsim03G0259700 Rhododendron simsii HOM05D004576 ORTHO05D005321 1.2e-07 62.0 34 82.4
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 1.0e-06 58.9 61 55.7
C03p88580 Brassica napus HOM05D004576 ORTHO05D005321 1.3e-06 58.5 86 44.2


User provided reference genes

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