Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 2.8e-67 258.5 130 100.0
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 3.8e-64 248.1 130 94.6
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 6.5e-64 247.3 130 94.6
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 5.5e-63 244.2 130 92.3
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 2.1e-62 242.3 130 91.5
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 2.1e-62 242.3 130 91.5
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 8.8e-61 236.9 129 89.9
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 2.2e-59 232.3 128 88.3
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 4.5e-57 224.6 125 86.4
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 4.5e-57 224.6 125 87.2
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 1.0e-56 223.4 130 85.4
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 1.7e-56 222.6 127 85.8
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 2.9e-56 221.9 130 83.8
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 5.0e-56 221.1 127 84.3
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 5.0e-56 221.1 124 86.3
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 5.0e-56 221.1 130 83.1
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 6.6e-56 220.7 124 87.1
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 1.5e-55 219.5 127 84.3
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 1.5e-55 219.5 127 84.3
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 5.5e-55 217.6 127 83.5
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 7.2e-55 217.2 131 83.2
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 1.2e-54 216.5 130 83.1
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 2.1e-54 215.7 124 85.5
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 2.8e-54 215.3 127 83.5
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.8e-54 215.3 127 83.5
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 3.6e-54 214.9 127 84.3
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 3.6e-54 214.9 127 82.7
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 3.6e-54 214.9 130 82.3
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 8.0e-54 213.8 127 82.7
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 8.0e-54 213.8 127 82.7
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 1.0e-53 213.4 125 83.2
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 1.0e-53 213.4 127 81.1
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 1.0e-53 213.4 122 84.4
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.4e-53 213.0 124 83.1
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 1.4e-53 213.0 129 82.2
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 1.8e-53 212.6 118 86.4
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.8e-53 212.6 127 82.7
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 1.8e-53 212.6 129 81.4
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 2.3e-53 212.2 118 86.4
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 3.0e-53 211.8 125 84.0
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 3.0e-53 211.8 124 83.9
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 3.0e-53 211.8 124 83.9
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 3.0e-53 211.8 127 79.5
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 4.0e-53 211.5 128 79.7
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 4.0e-53 211.5 129 79.1
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 5.2e-53 211.1 128 79.7
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 5.2e-53 211.1 128 80.5
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 5.2e-53 211.1 128 79.7
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 5.2e-53 211.1 129 80.6
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 5.2e-53 211.1 129 80.6
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 6.8e-53 210.7 128 79.7
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 6.8e-53 210.7 127 81.9
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 6.8e-53 210.7 127 79.5
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 8.9e-53 210.3 128 80.5
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 8.9e-53 210.3 128 79.7
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 1.2e-52 209.9 128 78.9
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 1.5e-52 209.5 128 79.7
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 1.5e-52 209.5 128 79.7
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 1.5e-52 209.5 128 79.7
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 1.5e-52 209.5 127 79.5
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 2.0e-52 209.1 127 79.5
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 2.6e-52 208.8 129 77.5
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 2.6e-52 208.8 127 79.5
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 3.4e-52 208.4 128 78.9
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 3.4e-52 208.4 127 78.7
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 3.4e-52 208.4 128 78.9
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.4e-52 208.0 127 81.1
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 4.4e-52 208.0 129 77.5
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 4.4e-52 208.0 129 76.7
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 4.4e-52 208.0 124 82.3
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 5.7e-52 207.6 129 80.6
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 7.5e-52 207.2 131 79.4
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 7.5e-52 207.2 128 79.7
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 7.5e-52 207.2 129 78.3
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 7.5e-52 207.2 125 80.0
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 9.8e-52 206.8 127 78.7
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 9.8e-52 206.8 129 77.5
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 1.3e-51 206.5 127 81.1
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 1.3e-51 206.5 127 81.1
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 1.3e-51 206.5 129 79.1
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 1.7e-51 206.1 129 76.0
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 2.8e-51 205.3 129 79.8
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 4.9e-51 204.5 127 79.5
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 6.3e-51 204.1 127 79.5
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 8.3e-51 203.8 129 78.3
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 1.1e-50 203.4 127 78.7
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.4e-50 203.0 127 78.7
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 1.4e-50 203.0 127 77.2
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 1.8e-50 202.6 129 79.1
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 1.8e-50 202.6 129 76.7
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 3.1e-50 201.8 128 75.0
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 3.1e-50 201.8 127 77.2
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 3.1e-50 201.8 124 79.0
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 4.1e-50 201.4 129 75.2
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 4.1e-50 201.4 127 76.4
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 5.4e-50 201.1 129 76.7
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 9.2e-50 200.3 130 75.4
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 9.2e-50 200.3 129 76.0
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 1.6e-49 199.5 127 78.0
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 2.0e-49 199.1 130 76.9
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 2.0e-49 199.1 128 77.3
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 1.7e-48 196.1 129 76.7
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 2.3e-48 195.7 127 77.2
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 3.9e-48 194.9 124 75.8
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 6.6e-48 194.1 129 74.4
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 3.3e-47 191.8 129 72.1
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 4.3e-47 191.4 129 73.6
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 5.6e-47 191.0 127 77.2
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 1.2e-44 183.3 109 77.1
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 2.6e-44 182.2 125 76.0
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 4.9e-43 177.9 172 56.4
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 2.4e-42 175.6 132 71.2
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 5.4e-42 174.5 106 81.1
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 1.1e-39 166.8 112 74.1
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 8.9e-37 157.1 104 76.0
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 5.8e-36 154.5 89 86.5
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 3.0e-32 142.1 80 81.2
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 8.6e-32 140.6 82 81.7
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 2.5e-31 139.0 130 63.1
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 7.1e-26 120.9 81 76.5
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 1.6e-25 119.8 79 77.2
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.6e-25 119.8 70 84.3
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 2.1e-25 119.4 86 65.1
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 1.7e-24 116.3 98 58.2
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 3.9e-24 115.2 70 82.9
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 1.2e-22 110.2 89 61.8
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 4.0e-21 105.1 61 83.6
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.7e-19 99.8 57 86.0
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 6.4e-19 97.8 82 54.9
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 2.1e-14 82.8 51 82.4
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 2.1e-14 82.8 116 49.1
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 6.9e-13 77.8 81 46.9
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 3.9e-08 62.0 36 80.6
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 5.1e-08 61.6 40 67.5
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 9.6e-07 57.4 59 42.4
Nitab4.5_0011266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 1.3e-06 57.0 50 68.0
Nitab4.5_0005166g0030 Nicotiana tabacum HOM05D001081 ORTHO05D025899 8.1e-06 54.3 50 66.0
Nitab4.5_0008435g0040 Nicotiana tabacum HOM05D002996 ORTHO05D025899 8.1e-06 54.3 50 68.0


User provided reference genes

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