Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G196600 Theobroma cacao HOM05D000003 ORTHO05D002259 3.3e-71 271.6 133 100.0
Thecc.05G035100 Theobroma cacao HOM05D000003 ORTHO05D002259 1.1e-10 70.5 63 52.4
Thecc.09G040100 Theobroma cacao HOM05D000682 ORTHO05D000510 1.9e-10 69.7 82 43.9
Thecc.K0005100 Theobroma cacao HOM05D000003 ORTHO05D002259 2.8e-09 65.9 64 45.3
Thecc.03G002300 Theobroma cacao HOM05D000003 ORTHO05D002259 8.0e-09 64.3 99 36.4
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 1.0e-08 63.9 63 47.6
Thecc.09G263100 Theobroma cacao HOM05D000003 ORTHO05D002259 1.0e-08 63.9 134 32.1
Thecc.04G086900 Theobroma cacao HOM05D000508 ORTHO05D000371 5.2e-08 61.6 57 50.9
COL.COLO4_27741 Corchorus olitorius HOM05D000003 ORTHO05D002259 1.2e-07 60.5 63 44.4
Thecc.06G083800 Theobroma cacao HOM05D000101 ORTHO05D000089 1.5e-07 60.1 63 44.4
Hma1.2p1_1241F.1_g269710 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 3.4e-07 58.9 86 40.7
COL.COLO4_06100 Corchorus olitorius HOM05D000003 ORTHO05D002259 4.4e-07 58.5 63 46.0
COL.COLO4_36005 Corchorus olitorius HOM05D000003 ORTHO05D002259 4.4e-07 58.5 63 44.4
Thecc.04G004700 Theobroma cacao HOM05D000003 ORTHO05D002259 4.4e-07 58.5 63 46.0
MSTRG.28030 Avicennia marina HOM05D000155 ORTHO05D000022 7.5e-07 57.8 63 41.3
Hma1.2p1_0719F.1_g208490 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 7.5e-07 57.8 84 38.1
Thecc.06G027000 Theobroma cacao HOM05D000003 ORTHO05D002259 7.5e-07 57.8 61 44.3
Hma1.2p1_0897F.1_g234290 Hydrangea macrophylla HOM05D000155 ORTHO05D000022 1.3e-06 57.0 47 51.1
Sopen06g012050 Solanum pennellii HOM05D000155 ORTHO05D000022 1.3e-06 57.0 122 33.6
Thecc.02G094300 Theobroma cacao HOM05D000003 ORTHO05D002259 1.3e-06 57.0 48 56.2
MBI09_g39407_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.7e-06 56.6 48 52.1
Thecc.04G115600 Theobroma cacao HOM05D000003 ORTHO05D002259 1.7e-06 56.6 80 42.5
Sopen03g011360 Solanum pennellii HOM05D000155 ORTHO05D000022 2.2e-06 56.2 48 47.9
Thecc.05G093100 Theobroma cacao HOM05D000003 ORTHO05D002259 2.2e-06 56.2 63 46.0
Atru.chr11.644 Acer truncatum HOM05D000003 ORTHO05D000004 3.7e-06 55.5 61 44.3
Atru.chr9.1620 Acer truncatum HOM05D000003 ORTHO05D002259 3.7e-06 55.5 69 44.9
Hma1.2p1_0616F.1_g190050 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 3.7e-06 55.5 62 41.9
MBI16_g37125_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.7e-06 55.5 62 45.2
Sopen05g018040 Solanum pennellii HOM05D000155 ORTHO05D000022 4.9e-06 55.1 48 47.9
PGSC0003DMG400040103 Solanum tuberosum HOM05D000003 ORTHO05D000022 4.9e-06 55.1 68 41.2
Thecc.06G027200 Theobroma cacao HOM05D000003 ORTHO05D002259 4.9e-06 55.1 62 38.7
Sopen01g005290 Solanum pennellii HOM05D000155 ORTHO05D000022 6.4e-06 54.7 48 47.9
Sopen01g016010 Solanum pennellii HOM05D000003 ORTHO05D000022 6.4e-06 54.7 72 41.7
Sopen01g024750 Solanum pennellii HOM05D000155 ORTHO05D000022 6.4e-06 54.7 75 40.0
PGSC0003DMG400041121 Solanum tuberosum HOM05D000155 ORTHO05D000022 6.4e-06 54.7 66 37.9
PGSC0003DMG400046872 Solanum tuberosum HOM05D000003 ORTHO05D000022 6.4e-06 54.7 66 39.4
MBI08_g23501_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.3e-06 54.3 70 38.6
MBI16_g07270_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.3e-06 54.3 48 47.9
MBI18_g20082_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.3e-06 54.3 63 44.4
Os06g0683500 Oryza sativa ssp. japonica HOM05D000155 ORTHO05D000022 8.3e-06 54.3 111 29.7
SEGI_18589 Sequoiadendron giganteum HOM05D022031 ORTHO05D000022 8.3e-06 54.3 46 54.3
PGSC0003DMG400040069 Solanum tuberosum HOM05D000155 ORTHO05D000022 8.3e-06 54.3 69 39.1
Thecc.04G000700 Theobroma cacao HOM05D000003 ORTHO05D002259 8.3e-06 54.3 84 39.3
Thecc.09G168800 Theobroma cacao HOM05D000003 ORTHO05D002259 8.3e-06 54.3 80 38.8


User provided reference genes

Program Settings