Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G190900 Theobroma cacao HOM05D006803 ORTHO05D008552 1.1e-50 203.0 98 100.0
Duzib084G0216 Durio zibethinus HOM05D006803 ORTHO05D008552 1.5e-12 76.3 36 100.0
Gohir.A08G097600 Gossypium hirsutum HOM05D006803 ORTHO05D008552 1.5e-12 76.3 36 100.0
Gohir.D08G108400 Gossypium hirsutum HOM05D006803 ORTHO05D008552 1.5e-12 76.3 36 100.0
Gorai.004G116000 Gossypium raimondii HOM05D006803 ORTHO05D008552 1.5e-12 76.3 36 100.0
Thecc.03G190700 Theobroma cacao HOM05D006803 ORTHO05D008552 1.5e-12 76.3 36 100.0
Atru.chr1.293 Acer truncatum HOM05D006803 ORTHO05D008552 3.4e-12 75.1 36 97.2
Actinidia34181 Actinidia chinensis HOM05D006803 ORTHO05D008552 3.4e-12 75.1 36 97.2
Aqoxy7G00212 Aquilegia oxysepala HOM05D006803 ORTHO05D008552 3.4e-12 75.1 36 97.2
CSS0034587 Camellia sinensis var. sinensis HOM05D006803 ORTHO05D008552 3.4e-12 75.1 36 97.2
Cpa.g.sc3.33 Carica papaya HOM05D006803 ORTHO05D008552 3.4e-12 75.1 36 97.2
COL.COLO4_07418 Corchorus olitorius HOM05D006803 ORTHO05D008552 3.4e-12 75.1 36 97.2
Dinv28351 Davidia involucrata HOM05D006803 ORTHO05D008552 3.4e-12 75.1 36 97.2
Eucgr.K00316 Eucalyptus grandis HOM05D006803 ORTHO05D008552 3.4e-12 75.1 36 97.2
Manes.14G019756 Manihot esculenta HOM05D006803 ORTHO05D008552 3.4e-12 75.1 36 97.2
Peaxi162Scf00904g00457 Petunia axillaris HOM05D006803 ORTHO05D008552 3.4e-12 75.1 36 97.2
SGA_v2.0_scaffold44G16771 Striga asiatica HOM05D006803 ORTHO05D008552 3.4e-12 75.1 36 97.2
TWI14G0759 Tripterygium wilfordii HOM05D006803 ORTHO05D008552 3.4e-12 75.1 36 97.2
GSVIVG01028745001 Vitis vinifera HOM05D006803 ORTHO05D008552 3.4e-12 75.1 36 97.2
CAN.G108.11 Capsicum annuum HOM05D006803 ORTHO05D008552 4.4e-12 74.7 36 94.4
CiPaw.05G259100 Carya illinoinensis HOM05D006803 ORTHO05D008552 4.4e-12 74.7 36 94.4
Ca_19336_v3 Cicer arietinum L. HOM05D006803 ORTHO05D008552 4.4e-12 74.7 36 94.4
ClCG05G008590 Citrullus lanatus HOM05D006803 ORTHO05D008552 4.4e-12 74.7 36 94.4
MELO3C006968.2 Cucumis melo HOM05D006803 ORTHO05D008552 4.4e-12 74.7 36 94.4
Glyma.09G125800 Glycine max HOM05D006803 ORTHO05D008552 4.4e-12 74.7 36 94.4
Medtr6g034205 Medicago truncatula HOM05D006803 ORTHO05D008552 4.4e-12 74.7 36 94.4
Phvul.004G101300 Phaseolus vulgaris HOM05D006803 ORTHO05D008552 4.4e-12 74.7 36 94.4
Hund11694 Selenicereus undatus HOM05D006803 ORTHO05D008552 4.4e-12 74.7 36 94.4
Sc19g0001080 Simmondsia chinensis HOM05D006803 ORTHO05D008552 4.4e-12 74.7 36 94.4
TPR.G36689 Trifolium pratense HOM05D006803 ORTHO05D008552 4.4e-12 74.7 36 94.4
VMungo0464G0281 Vigna mungo HOM05D006803 ORTHO05D008552 4.4e-12 74.7 36 94.4
Duzib205G0804 Durio zibethinus HOM05D006803 ORTHO05D008552 7.5e-12 73.9 36 97.2
ECA232G4170 Erigeron canadensis HOM05D006803 ORTHO05D008552 7.5e-12 73.9 36 94.4
HanXRQChr09g0253111 Helianthus annuus HOM05D006803 ORTHO05D008552 7.5e-12 73.9 36 94.4
Nn1g01776 Nelumbo nucifera HOM05D006803 ORTHO05D008552 7.5e-12 73.9 36 94.4
Os05g0569200 Oryza sativa ssp. japonica HOM05D006803 ORTHO05D008552 7.5e-12 73.9 36 94.4
PSO135G0887 Papaver somniferum HOM05D006803 ORTHO05D008552 7.5e-12 73.9 36 94.4
PSO384G2893 Papaver somniferum HOM05D006803 ORTHO05D008552 7.5e-12 73.9 36 94.4
PGR142G1334 Punica granatum HOM05D006803 ORTHO05D008552 7.5e-12 73.9 36 94.4
Rhsim03G0197200 Rhododendron simsii HOM05D006803 ORTHO05D008552 7.5e-12 73.9 36 94.4
TWI39G0241 Tripterygium wilfordii HOM05D006803 ORTHO05D008552 7.5e-12 73.9 36 94.4
unitig_37.g11977 Utricularia gibba HOM05D000211 ORTHO05D002285 7.5e-12 73.9 36 94.4
arahy.Tifrunner.gnm1.ann1.GHK1U8 Arachis hypogaea HOM05D006803 ORTHO05D008552 9.8e-12 73.6 36 91.7
arahy.Tifrunner.gnm1.ann1.V6YLC6 Arachis hypogaea HOM05D006803 ORTHO05D008552 9.8e-12 73.6 36 91.7
Ciclev10006070m.g Citrus clementina HOM05D006803 ORTHO05D008552 9.8e-12 73.6 36 91.7
Nitab4.5_0000472g0050 Nicotiana tabacum HOM05D006803 ORTHO05D008552 9.8e-12 73.6 35 97.1
Nitab4.5_0001331g0090 Nicotiana tabacum HOM05D006803 ORTHO05D008552 9.8e-12 73.6 35 97.1
Psat1g097000 Pisum sativum HOM05D006803 ORTHO05D008552 9.8e-12 73.6 36 91.7
Prupe.2G305500 Prunus persica HOM05D006803 ORTHO05D008552 9.8e-12 73.6 36 91.7
Sed0009140 Sechium edule HOM05D006803 ORTHO05D008552 9.8e-12 73.6 36 91.7
AL8G27460 Arabidopsis lyrata HOM05D006803 ORTHO05D008552 1.3e-11 73.2 36 94.4
A10p10450 Brassica napus HOM05D006803 ORTHO05D008552 1.3e-11 73.2 36 94.4
C09p42680 Brassica napus HOM05D006803 ORTHO05D008552 1.3e-11 73.2 36 94.4
BolC9t57144H Brassica oleracea HOM05D006803 ORTHO05D008552 1.3e-11 73.2 36 94.4
BraA10t43128Z Brassica rapa HOM05D006803 ORTHO05D008552 1.3e-11 73.2 36 94.4
Carub.0008s1314 Capsella rubella HOM05D006803 ORTHO05D008552 1.3e-11 73.2 36 94.4
Cc02_g02040 Coffea canephora HOM05D006803 ORTHO05D008552 1.3e-11 73.2 36 94.4
Sed0024434 Sechium edule HOM05D006803 ORTHO05D008552 1.3e-11 73.2 36 91.7
TAR333G0006 Trochodendron aralioides HOM05D006803 ORTHO05D008552 1.3e-11 73.2 36 94.4
ATR0721G182 Amborella trichopoda HOM05D006803 ORTHO05D008552 1.7e-11 72.8 36 91.7
DCAR_014527 Daucus carota HOM05D006803 ORTHO05D008552 1.7e-11 72.8 36 91.7
Lsat_1_v5_gn_9_57340 Lactuca sativa HOM05D006803 ORTHO05D008552 1.7e-11 72.8 36 91.7
MBI06_g04289_MAGBIO Magnolia biondii HOM05D006803 ORTHO05D008552 1.7e-11 72.8 36 91.7
MD07G1283300 Malus domestica HOM05D006803 ORTHO05D008552 1.7e-11 72.8 36 88.9
Mapoly0006s0111 Marchantia polymorpha HOM05D006803 ORTHO05D008552 1.7e-11 72.8 36 88.9
Oeu044167.1 Olea europaea HOM05D006803 ORTHO05D008552 1.7e-11 72.8 36 94.4
Pp3c4_26620 Physcomitrium patens HOM05D006803 ORTHO05D008552 1.7e-11 72.8 36 86.1
Potri.012G033700 Populus trichocarpa HOM05D006803 ORTHO05D008552 1.7e-11 72.8 36 91.7
Zm00001eb296320 Zea mays HOM05D006803 ORTHO05D008552 1.7e-11 72.8 36 91.7
AT5G52960 Arabidopsis thaliana HOM05D006803 ORTHO05D008552 2.2e-11 72.4 36 91.7
EL10Ac3g05364 Beta vulgaris HOM05D006803 ORTHO05D008552 2.2e-11 72.4 36 88.9
CANSAT21G0672 Cannabis sativa HOM05D006803 ORTHO05D008552 2.2e-11 72.4 36 88.9
FvH4_7g30800 Fragaria vesca HOM05D006803 ORTHO05D008552 2.2e-11 72.4 36 88.9
FAN01G0710 Fragaria x ananassa HOM05D006803 ORTHO05D008552 2.2e-11 72.4 36 88.9
FAN03G2299 Fragaria x ananassa HOM05D006803 ORTHO05D008552 2.2e-11 72.4 36 88.9
FAN06G1048 Fragaria x ananassa HOM05D006803 ORTHO05D008552 2.2e-11 72.4 36 88.9
FAN06G4527 Fragaria x ananassa HOM05D006803 ORTHO05D008552 2.2e-11 72.4 36 88.9
FAN10G2870 Fragaria x ananassa HOM05D006803 ORTHO05D008552 2.2e-11 72.4 36 88.9
Lj3C914T13 Lonicera japonica HOM05D006803 ORTHO05D008552 2.2e-11 72.4 36 94.4
Lalb_Chr01g0009661 Lupinus albus HOM05D006803 ORTHO05D008552 2.2e-11 72.4 36 88.9
MD01G1213500 Malus domestica HOM05D006803 ORTHO05D008552 2.2e-11 72.4 36 88.9
RcHm_v2.0_Chr1g0379821 Rosa chinensis HOM05D006803 ORTHO05D008552 2.2e-11 72.4 36 88.9
Hma1.2p1_0327F.1_g126650 Hydrangea macrophylla HOM05D006803 ORTHO05D008552 2.8e-11 72.0 36 94.4
Pp3c26_8430 Physcomitrium patens HOM05D006803 ORTHO05D008552 2.8e-11 72.0 36 86.1
SalBow4G1856 Salvia bowleyana HOM05D006803 ORTHO05D008552 2.8e-11 72.0 36 94.4
SalBow4G1881 Salvia bowleyana HOM05D006803 ORTHO05D008552 2.8e-11 72.0 36 94.4
Solyc03g007540.3 Solanum lycopersicum HOM05D006803 ORTHO05D008552 2.8e-11 72.0 36 91.7
Sopen03g003500 Solanum pennellii HOM05D006803 ORTHO05D008552 2.8e-11 72.0 36 91.7
PGSC0003DMG400009065 Solanum tuberosum HOM05D006803 ORTHO05D008552 2.8e-11 72.0 36 91.7
CDE03G0029 Ceratophyllum demersum HOM05D006803 ORTHO05D008552 3.7e-11 71.6 36 91.7
CDE04G2534 Ceratophyllum demersum HOM05D006803 ORTHO05D008552 3.7e-11 71.6 36 91.7
Glyma.16G172700 Glycine max HOM05D006803 ORTHO05D008552 3.7e-11 71.6 36 88.9
QL09p011586 Quercus lobata HOM05D006803 ORTHO05D008552 3.7e-11 71.6 35 88.6
Sabra12G0022800 Salix brachista HOM05D006803 ORTHO05D008552 3.7e-11 71.6 36 88.9
Sabra15G0018100 Salix brachista HOM05D006803 ORTHO05D008552 3.7e-11 71.6 50 68.0
Sabra15G0020600 Salix brachista HOM05D006803 ORTHO05D008552 3.7e-11 71.6 50 68.0
THA.LOC104825126 Tarenaya hassleriana HOM05D006803 ORTHO05D008552 3.7e-11 71.6 36 88.9
vmacro06587 Vaccinium macrocarpon HOM05D006803 ORTHO05D008552 3.7e-11 71.6 36 91.7
Aa31LG3G9190 Aethionema arabicum HOM05D006803 ORTHO05D008552 4.8e-11 71.2 36 91.7
Thhalv10014833m.g Eutrema salsugineum HOM05D006803 ORTHO05D008552 4.8e-11 71.2 36 91.7
Lj2g0024519 Lotus japonicus HOM05D006803 ORTHO05D008552 4.8e-11 71.2 36 86.1
Sp6g15120 Schrenkiella parvula HOM05D006803 ORTHO05D008552 4.8e-11 71.2 36 91.7
HPP92_011456 Vanilla planifolia HOM05D006803 ORTHO05D008552 4.8e-11 71.2 36 91.7
RcHm_v2.0_Chr1g0379761 Rosa chinensis HOM05D006803 ORTHO05D008552 6.3e-11 70.9 35 88.6
SMO169G0228 Selaginella moellendorffii HOM05D006803 ORTHO05D008552 8.3e-11 70.5 36 86.1
Actinidia08612 Actinidia chinensis HOM05D006803 ORTHO05D008552 1.4e-10 69.7 36 91.7
AagrBONN_evm.TU.Sc2ySwM_228.1351 Anthoceros agrestis HOM05D006803 ORTHO05D008552 1.4e-10 69.7 36 83.3
CBR_g9073 Chara braunii HOM05D006803 ORTHO05D008552 2.4e-10 68.9 36 86.1
Migut.F00254 Erythranthe guttata HOM05D006803 ORTHO05D008552 2.4e-10 68.9 36 88.9
Potri.016G123100 Populus trichocarpa HOM05D006803 ORTHO05D008552 5.4e-10 67.8 36 86.1
SEGI_13941 Sequoiadendron giganteum HOM05D006803 ORTHO05D008552 8.5e-08 60.5 36 80.6


User provided reference genes

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