Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G190700 Theobroma cacao HOM05D006803 ORTHO05D008552 1.6e-91 339.3 166 100.0
Duzib084G0216 Durio zibethinus HOM05D006803 ORTHO05D008552 4.1e-79 298.1 166 89.2
COL.COLO4_07418 Corchorus olitorius HOM05D006803 ORTHO05D008552 5.4e-79 297.7 166 88.0
Gohir.D08G108400 Gossypium hirsutum HOM05D006803 ORTHO05D008552 1.8e-74 282.7 166 86.1
Gorai.004G116000 Gossypium raimondii HOM05D006803 ORTHO05D008552 1.8e-74 282.7 166 86.1
Duzib205G0804 Durio zibethinus HOM05D006803 ORTHO05D008552 4.0e-74 281.6 166 84.9
Gohir.A08G097600 Gossypium hirsutum HOM05D006803 ORTHO05D008552 1.7e-72 276.2 166 84.3
Ciclev10006070m.g Citrus clementina HOM05D006803 ORTHO05D008552 6.8e-58 227.6 172 68.0
Cpa.g.sc3.33 Carica papaya HOM05D006803 ORTHO05D008552 1.2e-57 226.9 175 68.0
ClCG05G008590 Citrullus lanatus HOM05D006803 ORTHO05D008552 7.6e-57 224.2 123 84.6
Manes.14G019756 Manihot esculenta HOM05D006803 ORTHO05D008552 7.6e-57 224.2 170 66.5
CiPaw.05G259100 Carya illinoinensis HOM05D006803 ORTHO05D008552 1.3e-56 223.4 178 68.5
FAN06G1048 Fragaria x ananassa HOM05D006803 ORTHO05D008552 2.2e-56 222.6 156 71.8
FAN06G4527 Fragaria x ananassa HOM05D006803 ORTHO05D008552 2.2e-56 222.6 156 71.8
MD01G1213500 Malus domestica HOM05D006803 ORTHO05D008552 2.2e-56 222.6 174 65.5
FvH4_7g30800 Fragaria vesca HOM05D006803 ORTHO05D008552 4.9e-56 221.5 164 69.5
THA.LOC104825126 Tarenaya hassleriana HOM05D006803 ORTHO05D008552 4.9e-56 221.5 170 67.1
MELO3C006968.2 Cucumis melo HOM05D006803 ORTHO05D008552 6.4e-56 221.1 123 82.1
Carub.0008s1314 Capsella rubella HOM05D006803 ORTHO05D008552 8.4e-56 220.7 174 67.2
Aa31LG3G9190 Aethionema arabicum HOM05D006803 ORTHO05D008552 1.1e-55 220.3 153 71.2
Sp6g15120 Schrenkiella parvula HOM05D006803 ORTHO05D008552 1.1e-55 220.3 174 66.7
FAN01G0710 Fragaria x ananassa HOM05D006803 ORTHO05D008552 1.4e-55 219.9 145 75.2
RcHm_v2.0_Chr1g0379821 Rosa chinensis HOM05D006803 ORTHO05D008552 2.4e-55 219.2 145 74.5
FAN03G2299 Fragaria x ananassa HOM05D006803 ORTHO05D008552 5.4e-55 218.0 145 73.8
FAN10G2870 Fragaria x ananassa HOM05D006803 ORTHO05D008552 5.4e-55 218.0 145 74.5
Sed0009140 Sechium edule HOM05D006803 ORTHO05D008552 7.1e-55 217.6 146 72.6
Potri.012G033700 Populus trichocarpa HOM05D006803 ORTHO05D008552 9.3e-55 217.2 169 65.1
AT5G52960 Arabidopsis thaliana HOM05D006803 ORTHO05D008552 2.1e-54 216.1 173 64.7
Prupe.2G305500 Prunus persica HOM05D006803 ORTHO05D008552 2.1e-54 216.1 172 66.3
AL8G27460 Arabidopsis lyrata HOM05D006803 ORTHO05D008552 2.7e-54 215.7 173 65.3
Thhalv10014833m.g Eutrema salsugineum HOM05D006803 ORTHO05D008552 3.5e-54 215.3 153 71.9
GSVIVG01028745001 Vitis vinifera HOM05D006803 ORTHO05D008552 3.5e-54 215.3 167 66.5
C09p42680 Brassica napus HOM05D006803 ORTHO05D008552 4.6e-54 214.9 119 83.2
BolC9t57144H Brassica oleracea HOM05D006803 ORTHO05D008552 4.6e-54 214.9 119 83.2
BraA10t43128Z Brassica rapa HOM05D006803 ORTHO05D008552 4.6e-54 214.9 139 75.5
QL09p011586 Quercus lobata HOM05D006803 ORTHO05D008552 6.0e-54 214.5 150 69.3
A10p10450 Brassica napus HOM05D006803 ORTHO05D008552 7.8e-54 214.2 169 65.7
Nn1g01776 Nelumbo nucifera HOM05D006803 ORTHO05D008552 1.0e-53 213.8 171 66.7
VMungo0464G0281 Vigna mungo HOM05D006803 ORTHO05D008552 1.0e-53 213.8 166 64.5
Dinv28351 Davidia involucrata HOM05D006803 ORTHO05D008552 3.0e-53 212.2 173 63.0
Actinidia34181 Actinidia chinensis HOM05D006803 ORTHO05D008552 8.7e-53 210.7 171 64.9
Hma1.2p1_0327F.1_g126650 Hydrangea macrophylla HOM05D006803 ORTHO05D008552 8.7e-53 210.7 174 63.8
vmacro06587 Vaccinium macrocarpon HOM05D006803 ORTHO05D008552 8.7e-53 210.7 180 60.6
arahy.Tifrunner.gnm1.ann1.GHK1U8 Arachis hypogaea HOM05D006803 ORTHO05D008552 4.3e-52 208.4 168 63.1
arahy.Tifrunner.gnm1.ann1.V6YLC6 Arachis hypogaea HOM05D006803 ORTHO05D008552 4.3e-52 208.4 168 63.1
MD07G1283300 Malus domestica HOM05D006803 ORTHO05D008552 9.6e-52 207.2 130 74.6
Hund11694 Selenicereus undatus HOM05D006803 ORTHO05D008552 9.6e-52 207.2 124 78.2
Glyma.09G125800 Glycine max HOM05D006803 ORTHO05D008552 2.1e-51 206.1 158 65.8
TWI14G0759 Tripterygium wilfordii HOM05D006803 ORTHO05D008552 2.1e-51 206.1 156 69.2
Phvul.004G101300 Phaseolus vulgaris HOM05D006803 ORTHO05D008552 6.2e-51 204.5 172 65.7
Oeu044167.1 Olea europaea HOM05D006803 ORTHO05D008552 1.4e-50 203.4 151 67.5
TAR333G0006 Trochodendron aralioides HOM05D006803 ORTHO05D008552 1.8e-50 203.0 131 77.1
Eucgr.K00316 Eucalyptus grandis HOM05D006803 ORTHO05D008552 2.4e-50 202.6 120 81.7
TPR.G36689 Trifolium pratense HOM05D006803 ORTHO05D008552 2.4e-50 202.6 137 71.5
Peaxi162Scf00904g00457 Petunia axillaris HOM05D006803 ORTHO05D008552 3.1e-50 202.2 142 70.4
Atru.chr1.293 Acer truncatum HOM05D006803 ORTHO05D008552 4.0e-50 201.8 181 60.8
Actinidia08612 Actinidia chinensis HOM05D006803 ORTHO05D008552 5.3e-50 201.4 172 63.4
Potri.016G123100 Populus trichocarpa HOM05D006803 ORTHO05D008552 5.3e-50 201.4 135 71.1
CDE03G0029 Ceratophyllum demersum HOM05D006803 ORTHO05D008552 9.0e-50 200.7 139 68.3
PGR142G1334 Punica granatum HOM05D006803 ORTHO05D008552 9.0e-50 200.7 169 62.1
Ca_19336_v3 Cicer arietinum L. HOM05D006803 ORTHO05D008552 1.2e-49 200.3 175 61.7
SGA_v2.0_scaffold44G16771 Striga asiatica HOM05D006803 ORTHO05D008552 1.5e-49 199.9 124 79.0
unitig_37.g11977 Utricularia gibba HOM05D000211 ORTHO05D002285 1.5e-49 199.9 112 82.1
Aqoxy7G00212 Aquilegia oxysepala HOM05D006803 ORTHO05D008552 2.0e-49 199.5 133 72.9
Psat1g097000 Pisum sativum HOM05D006803 ORTHO05D008552 4.4e-49 198.4 173 58.4
EL10Ac3g05364 Beta vulgaris HOM05D006803 ORTHO05D008552 5.8e-49 198.0 153 65.4
Sed0024434 Sechium edule HOM05D006803 ORTHO05D008552 5.8e-49 198.0 146 65.1
PGSC0003DMG400009065 Solanum tuberosum HOM05D006803 ORTHO05D008552 9.9e-49 197.2 166 61.4
CDE04G2534 Ceratophyllum demersum HOM05D006803 ORTHO05D008552 1.3e-48 196.8 166 62.0
Glyma.16G172700 Glycine max HOM05D006803 ORTHO05D008552 1.3e-48 196.8 111 76.6
MBI06_g04289_MAGBIO Magnolia biondii HOM05D006803 ORTHO05D008552 1.3e-48 196.8 179 60.3
Migut.F00254 Erythranthe guttata HOM05D006803 ORTHO05D008552 1.7e-48 196.4 136 68.4
Solyc03g007540.3 Solanum lycopersicum HOM05D006803 ORTHO05D008552 1.7e-48 196.4 166 61.4
Sopen03g003500 Solanum pennellii HOM05D006803 ORTHO05D008552 1.7e-48 196.4 166 61.4
DCAR_014527 Daucus carota HOM05D006803 ORTHO05D008552 2.2e-48 196.1 167 59.9
Cc02_g02040 Coffea canephora HOM05D006803 ORTHO05D008552 2.9e-48 195.7 100 88.0
Sabra15G0018100 Salix brachista HOM05D006803 ORTHO05D008552 2.9e-48 195.7 185 55.7
PSO135G0887 Papaver somniferum HOM05D006803 ORTHO05D008552 3.8e-48 195.3 169 61.5
SalBow4G1856 Salvia bowleyana HOM05D006803 ORTHO05D008552 3.8e-48 195.3 166 62.0
SalBow4G1881 Salvia bowleyana HOM05D006803 ORTHO05D008552 3.8e-48 195.3 166 62.0
Sabra15G0020600 Salix brachista HOM05D006803 ORTHO05D008552 4.9e-48 194.9 185 55.1
TWI39G0241 Tripterygium wilfordii HOM05D006803 ORTHO05D008552 4.9e-48 194.9 146 68.5
Lj2g0024519 Lotus japonicus HOM05D006803 ORTHO05D008552 8.4e-48 194.1 169 59.2
PSO384G2893 Papaver somniferum HOM05D006803 ORTHO05D008552 3.2e-47 192.2 114 79.8
CAN.G108.11 Capsicum annuum HOM05D006803 ORTHO05D008552 7.1e-47 191.0 168 60.1
HanXRQChr09g0253111 Helianthus annuus HOM05D006803 ORTHO05D008552 1.2e-46 190.3 153 60.8
Lsat_1_v5_gn_9_57340 Lactuca sativa HOM05D006803 ORTHO05D008552 1.2e-46 190.3 136 66.2
CANSAT21G0672 Cannabis sativa HOM05D006803 ORTHO05D008552 2.1e-46 189.5 98 85.7
Sc19g0001080 Simmondsia chinensis HOM05D006803 ORTHO05D008552 2.1e-46 189.5 152 64.5
Lalb_Chr01g0009661 Lupinus albus HOM05D006803 ORTHO05D008552 3.5e-46 188.7 160 63.1
Lj3C914T13 Lonicera japonica HOM05D006803 ORTHO05D008552 4.6e-46 188.3 157 62.4
ATR0721G182 Amborella trichopoda HOM05D006803 ORTHO05D008552 6.0e-46 188.0 160 58.8
Medtr6g034205 Medicago truncatula HOM05D006803 ORTHO05D008552 6.0e-46 188.0 170 58.8
Mapoly0006s0111 Marchantia polymorpha HOM05D006803 ORTHO05D008552 3.0e-45 185.7 97 82.5
CSS0034587 Camellia sinensis var. sinensis HOM05D006803 ORTHO05D008552 5.1e-45 184.9 177 56.5
Sabra12G0022800 Salix brachista HOM05D006803 ORTHO05D008552 8.7e-45 184.1 240 45.8
Os05g0569200 Oryza sativa ssp. japonica HOM05D006803 ORTHO05D008552 2.5e-44 182.6 107 78.5
Zm00001eb296320 Zea mays HOM05D006803 ORTHO05D008552 4.3e-44 181.8 105 80.0
Rhsim03G0197200 Rhododendron simsii HOM05D006803 ORTHO05D008552 5.6e-44 181.4 98 82.7
ECA232G4170 Erigeron canadensis HOM05D006803 ORTHO05D008552 3.6e-43 178.7 97 83.5
SEGI_13941 Sequoiadendron giganteum HOM05D006803 ORTHO05D008552 5.3e-42 174.9 97 81.4
SMO169G0228 Selaginella moellendorffii HOM05D006803 ORTHO05D008552 4.5e-41 171.8 116 69.0
Pp3c4_26620 Physcomitrium patens HOM05D006803 ORTHO05D008552 1.7e-40 169.9 93 79.6
AagrBONN_evm.TU.Sc2ySwM_228.1351 Anthoceros agrestis HOM05D006803 ORTHO05D008552 2.2e-40 169.5 93 80.6
Pp3c26_8430 Physcomitrium patens HOM05D006803 ORTHO05D008552 3.0e-37 159.1 93 76.3
CARHR265930 Cardamine hirsuta HOM05D006803 ORTHO05D008552 3.9e-37 158.7 143 60.1
Nitab4.5_0000472g0050 Nicotiana tabacum HOM05D006803 ORTHO05D008552 1.9e-36 156.4 160 55.6
Haze_00093 Corylus avellana HOM05D006803 ORTHO05D008552 2.8e-35 152.5 139 61.2
Nitab4.5_0001331g0090 Nicotiana tabacum HOM05D006803 ORTHO05D008552 1.4e-34 150.2 171 53.2
CBR_g9073 Chara braunii HOM05D006803 ORTHO05D008552 2.6e-33 146.0 99 66.7
BcaB08g35659 Brassica carinata HOM05D006803 ORTHO05D008552 4.5e-33 145.2 86 77.9
Eucgr.L03342 Eucalyptus grandis HOM05D006803 ORTHO05D008552 6.0e-30 134.8 115 61.7
HPP92_011456 Vanilla planifolia HOM05D006803 ORTHO05D008552 1.1e-26 124.0 65 86.2
Oeu059677.1 Olea europaea HOM05D006803 ORTHO05D008552 1.7e-24 116.7 75 69.3
Oeu008094.1 Olea europaea HOM05D006803 ORTHO05D008552 1.0e-21 107.5 97 55.7
Oeu059693.1 Olea europaea HOM05D006803 ORTHO05D008552 1.5e-20 103.6 124 49.2
Thecc.03G190900 Theobroma cacao HOM05D006803 ORTHO05D008552 2.0e-12 76.6 36 100.0
RcHm_v2.0_Chr1g0379761 Rosa chinensis HOM05D006803 ORTHO05D008552 1.1e-10 70.9 35 88.6


User provided reference genes

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