Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G190100 Theobroma cacao HOM05D049050 ORTHO05D000001 8.3e-128 460.3 220 100.0
Thecc.03G189600 Theobroma cacao HOM05D049050 ORTHO05D408902 7.4e-84 314.3 147 100.0
Thecc.05G264300 Theobroma cacao HOM05D000002 ORTHO05D000001 1.6e-14 84.0 95 44.2
Manes.10G049666 Manihot esculenta HOM05D000002 ORTHO05D000001 1.4e-13 80.9 75 49.3
Duzib084G1319 Durio zibethinus HOM05D000002 ORTHO05D000001 3.1e-13 79.7 86 46.5
Duzib114G0941 Durio zibethinus HOM05D000002 ORTHO05D000001 4.0e-13 79.3 76 48.7
Duzib128G0886 Durio zibethinus HOM05D000002 ORTHO05D000001 1.2e-12 77.8 86 45.3
Duzib041G0290 Durio zibethinus HOM05D000002 ORTHO05D000001 1.5e-12 77.4 86 44.2
Duzib170G0368 Durio zibethinus HOM05D000002 ORTHO05D000001 1.5e-12 77.4 86 44.2
Duzib213G0091 Durio zibethinus HOM05D000002 ORTHO05D000001 1.5e-12 77.4 86 44.2
Gohir.D11G325300 Gossypium hirsutum HOM05D000092 ORTHO05D000042 1.5e-12 77.4 77 45.5
Duzib212G0395 Durio zibethinus HOM05D000002 ORTHO05D000001 7.5e-12 75.1 79 45.6
Atru.chr1.1850 Acer truncatum HOM05D000002 ORTHO05D000001 6.4e-11 72.0 74 44.6
Thecc.05G037500 Theobroma cacao HOM05D000002 ORTHO05D000001 1.1e-10 71.2 66 57.6
CAN.G756.46 Capsicum annuum HOM05D000002 ORTHO05D000001 1.9e-10 70.5 78 48.7
Sopen01g025280 Solanum pennellii HOM05D000002 ORTHO05D000001 2.4e-10 70.1 96 39.6
Gorai.005G117400 Gossypium raimondii HOM05D000002 ORTHO05D000001 3.2e-10 69.7 60 53.3
Sopen01g009970 Solanum pennellii HOM05D000002 ORTHO05D000001 3.2e-10 69.7 96 38.5
Duzib170G0347 Durio zibethinus HOM05D000002 ORTHO05D000001 5.4e-10 68.9 86 39.5
Lj3g0008931 Lotus japonicus HOM05D000002 ORTHO05D000001 5.4e-10 68.9 79 39.2
Sopen09g027810 Solanum pennellii HOM05D000002 ORTHO05D000001 7.0e-10 68.6 87 44.8
EL10Ac4g09273 Beta vulgaris HOM05D000002 ORTHO05D000001 9.2e-10 68.2 76 42.1
CAN.G1090.34 Capsicum annuum HOM05D000011 ORTHO05D016870 9.2e-10 68.2 98 37.8
EL10Ac9g21265 Beta vulgaris HOM05D000002 ORTHO05D000001 1.2e-09 67.8 74 43.2
Sopen02g005350 Solanum pennellii HOM05D000002 ORTHO05D000001 2.7e-09 66.6 96 38.5
Duzib211G0111 Durio zibethinus HOM05D000002 ORTHO05D000001 3.5e-09 66.2 87 42.5
TWI15G1219 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 3.5e-09 66.2 79 38.0
Sopen08g006260 Solanum pennellii HOM05D000006 ORTHO05D000001 4.6e-09 65.9 75 46.7
Atru.chr10.209 Acer truncatum HOM05D000002 ORTHO05D000001 6.0e-09 65.5 74 39.2
Atru.chr8.471 Acer truncatum HOM05D000002 ORTHO05D000001 6.0e-09 65.5 66 48.5
TWI31G0090 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 6.0e-09 65.5 79 38.0
Sopen01g020410 Solanum pennellii HOM05D006383 ORTHO05D007815 7.8e-09 65.1 79 40.5
TWI38G0170 Tripterygium wilfordii HOM05D000009 ORTHO05D000008 7.8e-09 65.1 79 41.8
Atru.chr4.412 Acer truncatum HOM05D000002 ORTHO05D000001 1.0e-08 64.7 95 35.8
Sopen08g020550 Solanum pennellii HOM05D000002 ORTHO05D000001 1.0e-08 64.7 96 38.5
Gorai.011G263500 Gossypium raimondii HOM05D000092 ORTHO05D000042 1.3e-08 64.3 63 44.4
Psat7g185520 Pisum sativum HOM05D000002 ORTHO05D000001 1.3e-08 64.3 77 41.6
Sopen05g020560 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-08 64.3 96 37.5
Duzib187G1208 Durio zibethinus HOM05D000002 ORTHO05D000001 1.7e-08 63.9 65 49.2
Sopen04g014610 Solanum pennellii HOM05D000002 ORTHO05D000001 1.7e-08 63.9 96 39.6
Ciclev10027035m.g Citrus clementina HOM05D000002 ORTHO05D000001 2.3e-08 63.5 77 41.6
Duzib138G1479 Durio zibethinus HOM05D000002 ORTHO05D000001 2.3e-08 63.5 87 41.4
PGSC0003DMG400013513 Solanum tuberosum HOM05D000002 ORTHO05D000001 2.3e-08 63.5 78 42.3
Sopen10g006280 Solanum pennellii HOM05D000002 ORTHO05D000001 3.0e-08 63.2 74 41.9
PGR102G0886 Punica granatum HOM05D000002 ORTHO05D000001 3.9e-08 62.8 93 38.7
PGR004G1580 Punica granatum HOM05D000002 ORTHO05D000001 6.6e-08 62.0 86 38.4
Eucgr.C04364 Eucalyptus grandis HOM05D000002 ORTHO05D000001 8.6e-08 61.6 86 38.4
Eucgr.K03052 Eucalyptus grandis HOM05D000002 ORTHO05D000001 8.6e-08 61.6 86 37.2
PGR129G0010 Punica granatum HOM05D000002 ORTHO05D000001 8.6e-08 61.6 86 37.2
THA.LOC104815425 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 8.6e-08 61.6 86 38.4
GSVIVG01034745001 Vitis vinifera HOM05D000103 ORTHO05D000049 8.6e-08 61.6 68 44.1
Eucgr.H05143 Eucalyptus grandis HOM05D000002 ORTHO05D000001 1.1e-07 61.2 86 37.2
Eucgr.L03606 Eucalyptus grandis HOM05D000002 ORTHO05D000001 1.1e-07 61.2 93 38.7
CSS0031737 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.5e-07 60.8 77 39.0
CSS0040477 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.5e-07 60.8 77 39.0
CAN.G1090.20 Capsicum annuum HOM05D000002 ORTHO05D000001 1.5e-07 60.8 74 37.8
Psat5g268360 Pisum sativum HOM05D000002 ORTHO05D000001 1.5e-07 60.8 80 41.2
PGR119G1744 Punica granatum HOM05D000002 ORTHO05D000001 1.5e-07 60.8 86 36.0
PGR142G1019 Punica granatum HOM05D000002 ORTHO05D000001 1.5e-07 60.8 102 36.3
Eucgr.C03386 Eucalyptus grandis HOM05D000002 ORTHO05D000001 1.9e-07 60.5 86 36.0
Eucgr.L01126 Eucalyptus grandis HOM05D000002 ORTHO05D000001 1.9e-07 60.5 86 36.0
THA.LOC104798816 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 1.9e-07 60.5 94 36.2
THA.LOC104801932 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 1.9e-07 60.5 94 36.2
THA.LOC104804916 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 1.9e-07 60.5 96 35.4
THA.LOC104808467 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 1.9e-07 60.5 96 35.4
PGR142G1863 Punica granatum HOM05D000002 ORTHO05D000001 2.5e-07 60.1 86 36.0
Atru.chr2.3414 Acer truncatum HOM05D000002 ORTHO05D000001 3.3e-07 59.7 74 36.5
Eucgr.F01722 Eucalyptus grandis HOM05D000002 ORTHO05D000001 3.3e-07 59.7 86 37.2
Eucgr.H01309 Eucalyptus grandis HOM05D000002 ORTHO05D000001 3.3e-07 59.7 86 36.0
THA.LOC104821175 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 3.3e-07 59.7 94 36.2
Duzib168G2179 Durio zibethinus HOM05D000002 ORTHO05D000001 4.3e-07 59.3 78 42.3
Eucgr.C02847 Eucalyptus grandis HOM05D000002 ORTHO05D000001 4.3e-07 59.3 86 36.0
Eucgr.D00207 Eucalyptus grandis HOM05D000002 ORTHO05D000001 4.3e-07 59.3 93 37.6
GSVIVG01011363001 Vitis vinifera HOM05D002216 ORTHO05D002011 4.3e-07 59.3 80 42.5
GSVIVG01037631001 Vitis vinifera HOM05D000092 ORTHO05D000042 4.3e-07 59.3 80 42.5
Duzib106G0529 Durio zibethinus HOM05D000002 ORTHO05D000001 5.6e-07 58.9 77 39.0
Eucgr.F00853 Eucalyptus grandis HOM05D000002 ORTHO05D000001 5.6e-07 58.9 74 39.2
Eucgr.G01578 Eucalyptus grandis HOM05D000002 ORTHO05D000001 5.6e-07 58.9 86 36.0
PGR042G1475 Punica granatum HOM05D000002 ORTHO05D000001 5.6e-07 58.9 79 39.2
PSO151G0096 Papaver somniferum HOM05D000002 ORTHO05D000001 7.3e-07 58.5 70 47.1
TWI15G1217 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 7.3e-07 58.5 72 37.5
CAN.G22.52 Capsicum annuum HOM05D000121 ORTHO05D012651 9.5e-07 58.2 75 37.3
Eucgr.E01470 Eucalyptus grandis HOM05D000002 ORTHO05D000001 9.5e-07 58.2 74 39.2
Eucgr.E01889 Eucalyptus grandis HOM05D000002 ORTHO05D000001 9.5e-07 58.2 86 34.9
Sopen02g010710 Solanum pennellii HOM05D000002 ORTHO05D000001 9.5e-07 58.2 86 36.0
PGSC0003DMG400044287 Solanum tuberosum HOM05D000002 ORTHO05D000001 9.5e-07 58.2 77 39.0
THA.LOC104801877 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 9.5e-07 58.2 98 36.7
CsaV3_5G024630 Cucumis sativus L. HOM05D000002 ORTHO05D000001 1.2e-06 57.8 86 37.2
Eucgr.K03232 Eucalyptus grandis HOM05D000002 ORTHO05D000001 1.2e-06 57.8 93 36.6
CSS0002307 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.6e-06 57.4 87 40.2
PGR083G2178 Punica granatum HOM05D000002 ORTHO05D000001 1.6e-06 57.4 105 31.4
THA.LOC104804703 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 1.6e-06 57.4 68 39.7
TWI14G0389 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 2.1e-06 57.0 80 41.2
CSS0036683 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.8e-06 56.6 79 35.4
Cpa.g.sc46.3 Carica papaya HOM05D000002 ORTHO05D000001 2.8e-06 56.6 63 41.3
PGR102G3201 Punica granatum HOM05D000002 ORTHO05D000001 2.8e-06 56.6 79 38.0
TWI09G1183 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 2.8e-06 56.6 79 34.2
TWI79G0963 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 2.8e-06 56.6 79 38.0
Duzib213G0817 Durio zibethinus HOM05D000002 ORTHO05D000001 3.6e-06 56.2 59 47.5
Eucgr.F00519 Eucalyptus grandis HOM05D000002 ORTHO05D000001 3.6e-06 56.2 93 35.5
Eucgr.C03626 Eucalyptus grandis HOM05D000002 ORTHO05D000001 4.7e-06 55.8 86 34.9
Hma1.2p1_0243F.1_g100950 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.7e-06 55.8 86 36.0
THA.LOC104806972 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 4.7e-06 55.8 80 38.8
Ciclev10017902m.g Citrus clementina HOM05D000002 ORTHO05D000001 6.2e-06 55.5 53 49.1
Eucgr.C00972 Eucalyptus grandis HOM05D000002 ORTHO05D000001 6.2e-06 55.5 86 36.0
Sopen10g013730 Solanum pennellii HOM05D000006 ORTHO05D000001 6.2e-06 55.5 96 35.4
THA.LOC104800423 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 6.2e-06 55.5 86 34.9


User provided reference genes

Program Settings