Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G185500 Theobroma cacao HOM05D002465 ORTHO05D005308 0.0e+00 1240.7 621 100.0
Gorai.008G274000 Gossypium raimondii HOM05D002465 ORTHO05D005308 2.0e-296 1021.9 618 84.1
COL.COLO4_30301 Corchorus olitorius HOM05D002465 ORTHO05D005308 8.8e-284 979.9 594 83.5
Gohir.D12G255900 Gossypium hirsutum HOM05D002465 ORTHO05D005308 2.0e-280 968.8 618 81.1
Duzib205G0901 Durio zibethinus HOM05D002465 ORTHO05D005308 2.7e-280 968.4 617 80.6
Gohir.A12G253600 Gossypium hirsutum HOM05D002465 ORTHO05D005308 6.5e-271 937.2 619 78.4
QL09p012529 Quercus lobata HOM05D002465 ORTHO05D005308 3.4e-243 845.1 615 68.3
Haze_00055 Corylus avellana HOM05D002465 ORTHO05D005308 4.4e-243 844.7 628 68.2
Manes.06G153300 Manihot esculenta HOM05D002465 ORTHO05D005308 9.2e-241 837.0 615 69.1
Ciclev10006841m.g Citrus clementina HOM05D002465 ORTHO05D005308 7.8e-232 807.4 612 66.8
Dinv35264 Davidia involucrata HOM05D002465 ORTHO05D005308 1.1e-230 803.5 611 66.6
Potri.017G148000 Populus trichocarpa HOM05D002465 ORTHO05D005308 4.3e-230 801.6 618 67.0
Cfa016295 Carpinus fangiana HOM05D002465 ORTHO05D005308 1.6e-229 799.7 597 67.3
GSVIVG01028829001 Vitis vinifera HOM05D002465 ORTHO05D005308 2.4e-228 795.8 609 66.3
TWI23G1289 Tripterygium wilfordii HOM05D002465 ORTHO05D005308 6.9e-228 794.3 618 65.2
Sabra17G0123700 Salix brachista HOM05D002465 ORTHO05D005308 2.0e-227 792.7 638 64.6
Cpa.g.sc107.121 Carica papaya HOM05D002465 ORTHO05D005308 4.4e-227 791.6 622 66.9
Sabra17G0123300 Salix brachista HOM05D002465 ORTHO05D005308 9.3e-225 783.9 641 63.7
Prupe.2G301900 Prunus persica HOM05D002465 ORTHO05D005308 2.5e-222 775.8 617 64.8
MD01G1209800 Malus domestica HOM05D002465 ORTHO05D005308 3.1e-220 768.8 616 63.0
Actinidia34161 Actinidia chinensis HOM05D002465 ORTHO05D005308 5.8e-219 764.6 615 64.4
Lalb_Chr19g0130571 Lupinus albus HOM05D002465 ORTHO05D005308 5.8e-211 738.0 618 60.5
THA.LOC104811947 Tarenaya hassleriana HOM05D002465 ORTHO05D005308 5.8e-211 738.0 615 60.5
Medtr6g052330 Medicago truncatula HOM05D002465 ORTHO05D005308 1.7e-210 736.5 629 60.1
TAR374G1583 Trochodendron aralioides HOM05D002465 ORTHO05D005308 2.2e-210 736.1 527 69.4
Migut.F00281 Erythranthe guttata HOM05D002465 ORTHO05D005308 1.4e-209 733.4 618 61.7
Eucgr.A02722 Eucalyptus grandis HOM05D002465 ORTHO05D005308 1.4e-209 733.4 613 63.0
PSO170G2577 Papaver somniferum HOM05D002465 ORTHO05D005308 2.5e-209 732.6 614 62.1
Lj2g0016146 Lotus japonicus HOM05D002465 ORTHO05D005308 9.3e-209 730.7 624 61.2
EL10Ac3g05400 Beta vulgaris HOM05D002465 ORTHO05D005308 1.2e-208 730.3 610 60.7
TPR.G9187 Trifolium pratense HOM05D002465 ORTHO05D005308 2.1e-208 729.6 625 61.4
RcHm_v2.0_Chr1g0378531 Rosa chinensis HOM05D002465 ORTHO05D005308 1.0e-207 727.2 617 61.4
Aqoxy5G04085 Aquilegia oxysepala HOM05D002465 ORTHO05D005308 7.4e-206 721.1 614 60.6
BcaB05g21981 Brassica carinata HOM05D002465 ORTHO05D005308 4.8e-205 718.4 617 61.6
Thhalv10012991m.g Eutrema salsugineum HOM05D002465 ORTHO05D005308 1.1e-204 717.2 618 61.7
ClCG05G008450 Citrullus lanatus HOM05D002465 ORTHO05D005308 3.1e-204 715.7 609 61.6
Nitab4.5_0007593g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 2.6e-203 712.6 614 60.4
PGR042G3288 Punica granatum HOM05D002465 ORTHO05D005308 2.6e-203 712.6 614 59.9
FAN06G3650 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.5e-203 711.8 598 61.4
Oeu036031.1 Olea europaea HOM05D002465 ORTHO05D005308 4.5e-203 711.8 615 60.3
FAN06G0430 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.6e-203 711.1 598 61.2
BraA02t06223Z Brassica rapa HOM05D002465 ORTHO05D005308 1.7e-202 709.9 623 61.2
FAN10G1194 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-202 709.5 598 61.7
BcaC03g14499 Brassica carinata HOM05D002465 ORTHO05D005308 2.9e-202 709.1 621 61.2
CsaV3_3G017530 Cucumis sativus L. HOM05D002465 ORTHO05D005308 3.8e-202 708.8 613 60.0
Sed0022656 Sechium edule HOM05D002465 ORTHO05D005308 3.8e-202 708.8 601 61.2
C02p19370 Brassica napus HOM05D002465 ORTHO05D005308 8.4e-202 707.6 621 61.4
Sc13g0009230 Simmondsia chinensis HOM05D002465 ORTHO05D005308 1.4e-201 706.8 612 59.6
AUR62021107 Chenopodium quinoa HOM05D002465 ORTHO05D005308 1.9e-201 706.4 610 60.3
FvH4_7g30390 Fragaria vesca HOM05D002465 ORTHO05D005308 3.2e-201 705.7 594 61.1
A02p11610 Brassica napus HOM05D002465 ORTHO05D005308 5.5e-201 704.9 623 61.0
Carub.0008s1296 Capsella rubella HOM05D002465 ORTHO05D005308 1.2e-200 703.7 621 59.3
ECA232G4104 Erigeron canadensis HOM05D002465 ORTHO05D005308 6.0e-200 701.4 608 60.4
HanXRQChr15g0494161 Helianthus annuus HOM05D002465 ORTHO05D005308 1.0e-199 700.7 614 59.1
Glyma.09G129600 Glycine max HOM05D002465 ORTHO05D005308 1.8e-199 699.9 617 58.3
Cc02_g02290 Coffea canephora HOM05D002465 ORTHO05D005308 5.1e-199 698.4 631 57.7
AUR62031432 Chenopodium quinoa HOM05D002465 ORTHO05D005308 8.7e-199 697.6 610 60.0
Sopen12g022610 Solanum pennellii HOM05D002465 ORTHO05D005308 7.4e-198 694.5 614 58.8
SGA_v2.0_scaffold60G21117 Striga asiatica HOM05D002465 ORTHO05D005308 1.6e-197 693.3 659 54.2
CiPaw.05G261600 Carya illinoinensis HOM05D002465 ORTHO05D005308 1.1e-196 690.6 500 70.6
Nn1g01670 Nelumbo nucifera HOM05D002465 ORTHO05D005308 1.4e-196 690.3 494 69.2
FAN03G3136 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.1e-196 689.1 617 59.2
AL8G27230 Arabidopsis lyrata HOM05D002465 ORTHO05D005308 5.3e-196 688.3 628 59.2
FAN10G1435 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.3e-196 688.3 587 61.0
BolC2t08072H Brassica oleracea HOM05D002465 ORTHO05D005308 9.0e-196 687.6 607 61.1
CAN.G290.13 Capsicum annuum HOM05D002465 ORTHO05D005308 9.0e-196 687.6 615 55.6
Aa31LG3G9040 Aethionema arabicum HOM05D002465 ORTHO05D005308 5.9e-195 684.9 674 53.6
Sp6g14950 Schrenkiella parvula HOM05D002465 ORTHO05D005308 5.0e-194 681.8 628 59.2
Nitab4.5_0008234g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 1.1e-193 680.6 623 57.8
Psat0s1684g0080 Pisum sativum HOM05D002465 ORTHO05D005308 1.4e-193 680.2 593 60.2
DCAR_008895 Daucus carota HOM05D002465 ORTHO05D005308 5.5e-193 678.3 649 54.9
Lsat_1_v5_gn_9_56800 Lactuca sativa HOM05D002465 ORTHO05D005308 4.6e-192 675.2 610 57.4
Hund04793 Selenicereus undatus HOM05D002465 ORTHO05D005308 7.9e-192 674.5 598 57.7
SalBow4G2218 Salvia bowleyana HOM05D002465 ORTHO05D005308 2.5e-190 669.5 613 56.1
AT5G52800 Arabidopsis thaliana HOM05D002465 ORTHO05D005308 4.3e-190 668.7 620 57.9
Lj1C1006G4 Lonicera japonica HOM05D002465 ORTHO05D005308 2.8e-189 666.0 557 60.0
Ah.07g206490 Amaranthus hybridus HOM05D002465 ORTHO05D005308 4.5e-187 658.7 600 58.7
Rhsim03G0191700 Rhododendron simsii HOM05D002465 ORTHO05D005308 2.5e-185 652.9 517 62.5
MELO3C006956.2 Cucumis melo HOM05D002465 ORTHO05D005308 7.0e-180 634.8 612 56.5
Os07g0467900 Oryza sativa ssp. japonica HOM05D002465 ORTHO05D005308 2.9e-178 629.4 609 55.8
vmacro06621 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 2.7e-176 622.9 478 67.4
MBI04_g26956_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 5.7e-174 615.1 512 61.5
FAN01G1269 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-173 613.2 613 55.1
arahy.Tifrunner.gnm1.ann1.77GMEU Arachis hypogaea HOM05D002465 ORTHO05D005308 6.3e-173 611.7 624 54.8
Atru.BG.183.p Acer truncatum HOM05D002465 ORTHO05D005308 1.1e-172 610.9 495 64.6
Hma1.2p1_0274F.1_g110040 Hydrangea macrophylla HOM05D002465 ORTHO05D005308 1.0e-170 604.4 562 56.8
unitig_52.g17726 Utricularia gibba HOM05D002465 ORTHO05D005308 3.8e-170 602.4 591 53.6
Phvul.004G106200 Phaseolus vulgaris HOM05D002465 ORTHO05D005308 1.3e-165 587.4 513 59.5
ATR0661G279 Amborella trichopoda HOM05D002465 ORTHO05D005308 2.5e-161 573.2 572 53.3
SHI09096 Sapria himalayana HOM05D002465 ORTHO05D005308 6.3e-157 558.5 463 62.2
HPP92_015081 Vanilla planifolia HOM05D002465 ORTHO05D005308 4.5e-155 552.4 453 61.4
arahy.Tifrunner.gnm1.ann1.TJ5MNL Arachis hypogaea HOM05D002465 ORTHO05D005308 1.3e-154 550.8 457 61.5
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 3.8e-154 549.3 473 55.4
DCAR_018565 Daucus carota HOM05D002465 ORTHO05D005308 3.6e-152 542.7 488 54.1
Medtr6g052340 Medicago truncatula HOM05D002465 ORTHO05D005308 2.7e-147 526.6 401 64.3
Peaxi162Scf00023g00823 Petunia axillaris HOM05D002465 ORTHO05D005308 2.6e-142 510.0 443 59.1
Ca_26606_v3 Cicer arietinum L. HOM05D002465 ORTHO05D005308 1.4e-135 487.6 594 48.0
CSS0029570 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 8.9e-135 485.0 349 68.5
Mapoly0051s0060 Marchantia polymorpha HOM05D002465 ORTHO05D005308 2.9e-133 479.9 627 41.6
Pp3c1_12340 Physcomitrium patens HOM05D002465 ORTHO05D005308 6.4e-133 478.8 655 42.3
AagrBONN_evm.TU.Sc2ySwM_228.3313 Anthoceros agrestis HOM05D002465 ORTHO05D005308 1.2e-128 464.5 654 41.3
MSTRG.8702 Avicennia marina HOM05D002465 ORTHO05D005308 1.9e-121 440.7 341 66.0
RcHm_v2.0_Chr3g0497461 Rosa chinensis HOM05D002465 ORTHO05D005308 9.9e-118 428.3 377 59.4
Sabra17G0121400 Salix brachista HOM05D002465 ORTHO05D005308 1.1e-113 414.8 497 50.5
SMO103G0001 Selaginella moellendorffii HOM05D002465 ORTHO05D005308 1.9e-100 370.9 398 47.7
CBR_g36403 Chara braunii HOM05D002465 ORTHO05D005308 7.9e-99 365.5 463 42.5
CANSAT21G2443 Cannabis sativa HOM05D002465 ORTHO05D005308 4.0e-95 353.2 340 57.1
VMungo0464G1215 Vigna mungo HOM05D002465 ORTHO05D005308 5.7e-89 332.8 297 57.2
SEGI_25618 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 5.7e-73 279.6 215 62.3
DCAR_005086 Daucus carota HOM05D002465 ORTHO05D005308 5.5e-68 263.1 334 43.4
MSTRG.8701 Avicennia marina HOM05D002465 ORTHO05D005308 1.5e-65 255.0 254 54.3
FAN05G2518 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.2e-62 245.4 161 71.4
FAN09G4610 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.2e-62 245.4 161 71.4
FAN10G2552 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.2e-62 245.4 161 71.4
FAN25G3664 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.2e-62 245.4 161 71.4
MCO12G313 Micromonas commoda HOM05D002465 ORTHO05D005308 4.5e-62 243.4 381 36.7
DCAR_030059 Daucus carota HOM05D002465 ORTHO05D005308 1.9e-60 238.0 174 62.6
CSS0047166 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 2.0e-57 228.0 231 52.8
Oeu058603.1 Olea europaea HOM05D002465 ORTHO05D005308 3.7e-56 223.8 200 58.5
DCAR_029376 Daucus carota HOM05D002465 ORTHO05D005308 9.1e-55 219.2 155 61.3
MD01G1209700 Malus domestica HOM05D002465 ORTHO05D005308 4.7e-51 206.8 248 51.2
Zm00001eb320240 Zea mays HOM05D002465 ORTHO05D005308 1.2e-49 202.2 236 49.2
HPP92_028543 Vanilla planifolia HOM05D002465 ORTHO05D005308 4.2e-44 183.7 119 66.4
Actinidia08586 Actinidia chinensis HOM05D002465 ORTHO05D008860 3.0e-42 177.6 241 44.0
PRCOL_00005773 Prasinoderma coloniale HOM05D002465 ORTHO05D005308 2.6e-41 174.5 442 30.1
Actinidia08585 Actinidia chinensis HOM05D002465 ORTHO05D005308 6.1e-35 153.3 98 70.4
DCAR_030105 Daucus carota HOM05D002465 ORTHO05D005308 4.9e-32 143.7 228 35.5
FAN03G1432 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.4e-31 142.1 161 48.4
FAN09G0727 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.4e-31 142.1 161 48.4
FAN09G3189 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.4e-31 142.1 161 48.4
FAN14G0324 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.4e-31 142.1 161 48.4
FAN16G1547 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.4e-31 142.1 161 48.4
FAN21G0521 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.4e-31 142.1 161 48.4
FAN22G1212 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.4e-31 142.1 161 48.4
FAN25G1827 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.4e-31 142.1 161 48.4
FAN25G2717 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.4e-31 142.1 161 48.4
FAN27G0148 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.4e-31 142.1 161 48.4
FAN27G0541 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.4e-31 142.1 161 48.4
FAN27G0848 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.4e-31 142.1 161 48.4
FAN28G0992 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.4e-31 142.1 161 48.4
vmacro06620 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 2.0e-30 138.3 144 46.5
SEGI_28877 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 1.3e-29 135.6 172 40.7
Psat0s1616g0040 Pisum sativum HOM05D002465 ORTHO05D005308 3.9e-29 134.0 120 65.0
Sabra17G0121500 Salix brachista HOM05D002465 ORTHO05D005308 5.0e-29 133.7 147 52.4
Cre17.g705150 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D005308 1.1e-28 132.5 363 27.8
RcHm_v2.0_Chr1g0361031 Rosa chinensis HOM05D002465 ORTHO05D005308 1.5e-25 122.1 89 62.9
CBR_g81559 Chara braunii HOM05D002465 ORTHO05D005308 2.6e-25 121.3 172 39.0
PSO063G0346 Papaver somniferum HOM05D002465 ORTHO05D005308 2.8e-19 101.3 118 46.6
Sabra18G0007300 Salix brachista HOM05D002718 ORTHO05D003269 1.7e-16 92.0 72 77.8
CBR_g19350 Chara braunii HOM05D000019 ORTHO05D000048 3.7e-16 90.9 166 32.5
Rhsim10G0052100 Rhododendron simsii HOM05D002465 ORTHO05D036401 1.4e-15 89.0 91 61.5
FAN23G0684 Fragaria x ananassa HOM05D002465 ORTHO05D000592 5.4e-15 87.0 161 37.3
Nitab4.5_0007593g0030 Nicotiana tabacum HOM05D002465 ORTHO05D005308 1.6e-14 85.5 45 77.8
Cre12.g553253 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D145954 4.7e-11 73.9 84 40.5
CBR_g47978 Chara braunii HOM05D002465 ORTHO05D005308 7.6e-09 66.6 102 34.3
Solyc12g044350.1 Solanum lycopersicum HOM05D002465 ORTHO05D005308 1.7e-08 65.5 44 68.2
Psat2g076120 Pisum sativum HOM05D024525 ORTHO05D005308 1.9e-07 62.0 69 43.5
Psat7g022520 Pisum sativum HOM05D024525 ORTHO05D005308 4.1e-07 60.8 76 40.8
Peaxi162Scf00023g00818 Petunia axillaris HOM05D002465 ORTHO05D005308 5.4e-07 60.5 44 63.6


User provided reference genes

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