Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 7.6e-183 643.7 316 100.0
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 1.7e-150 536.2 317 81.4
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 9.4e-149 530.4 317 83.3
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 5.5e-141 504.6 293 82.9
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 4.4e-138 495.0 293 81.2
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 4.4e-138 495.0 293 81.6
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 9.7e-138 493.8 324 75.6
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.3e-134 483.4 318 74.8
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 3.8e-134 481.9 318 74.5
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 2.5e-133 479.2 284 83.1
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 1.0e-118 430.6 319 64.6
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 2.6e-114 416.0 315 65.4
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 2.4e-112 409.5 322 64.0
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 5.4e-112 408.3 321 63.2
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 2.0e-111 406.4 315 62.9
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 6.0e-111 404.8 330 62.7
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 8.6e-110 401.0 321 62.0
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 7.3e-109 397.9 315 61.0
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 9.5e-109 397.5 320 63.1
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 1.2e-108 397.1 318 61.9
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.8e-107 393.3 315 61.3
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 3.1e-107 392.5 313 61.3
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 5.2e-107 391.7 316 59.8
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 6.8e-107 391.3 353 57.2
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 6.8e-107 391.3 320 60.6
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 3.4e-106 389.0 315 63.2
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 5.8e-106 388.3 262 69.5
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 7.5e-106 387.9 312 63.1
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 1.7e-105 386.7 290 64.5
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 2.9e-105 386.0 318 62.6
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 2.9e-105 386.0 337 59.3
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 1.1e-104 384.0 326 60.4
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 1.4e-104 383.6 324 59.9
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 1.4e-104 383.6 264 68.6
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 1.4e-104 383.6 317 59.9
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 5.4e-104 381.7 334 58.1
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 5.4e-104 381.7 334 58.1
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 9.2e-104 380.9 377 55.2
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 1.2e-103 380.6 317 60.6
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 1.6e-103 380.2 320 60.0
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 2.1e-103 379.8 320 60.0
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 2.7e-103 379.4 320 60.0
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 7.8e-103 377.9 296 64.9
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 1.3e-102 377.1 284 63.0
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 1.7e-102 376.7 298 61.1
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 3.9e-102 375.6 316 60.1
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 5.1e-102 375.2 316 58.9
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 8.6e-102 374.4 315 60.0
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 8.6e-102 374.4 323 58.8
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 8.6e-102 374.4 322 61.2
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 8.6e-102 374.4 322 59.3
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 1.1e-101 374.0 300 62.0
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 1.1e-101 374.0 323 58.2
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 1.5e-101 373.6 266 65.4
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 2.5e-101 372.9 286 64.0
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 4.3e-101 372.1 316 61.1
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 2.1e-100 369.8 318 59.4
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 3.6e-100 369.0 314 59.6
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 4.7e-100 368.6 313 59.7
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 6.2e-100 368.2 284 64.4
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 8.1e-100 367.9 320 58.8
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 1.1e-99 367.5 315 59.7
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.8e-99 366.7 290 61.0
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 1.2e-98 364.0 314 58.6
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 1.5e-98 363.6 323 57.9
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 2.6e-98 362.8 314 58.6
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 5.8e-98 361.7 270 63.3
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 7.6e-98 361.3 318 57.5
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 1.7e-97 360.1 229 70.7
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 2.9e-97 359.4 316 58.2
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 2.9e-97 359.4 316 58.2
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 2.9e-97 359.4 357 53.2
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 3.7e-97 359.0 284 60.6
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 6.4e-97 358.2 322 57.1
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 3.2e-96 355.9 276 62.7
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 4.1e-96 355.5 240 68.3
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 9.2e-96 354.4 285 60.0
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 4.6e-95 352.1 282 59.9
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 1.3e-94 350.5 282 62.8
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 1.3e-94 350.5 276 62.7
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 2.3e-94 349.7 316 54.7
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 5.1e-94 348.6 242 63.6
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 5.1e-94 348.6 323 54.2
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 6.6e-94 348.2 282 60.6
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 6.6e-94 348.2 323 54.2
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 8.6e-94 347.8 383 49.9
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 1.1e-93 347.4 319 56.7
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 1.9e-93 346.7 242 66.1
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 4.3e-93 345.5 273 61.9
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 7.3e-93 344.7 290 59.3
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 7.3e-93 344.7 321 55.1
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 4.7e-92 342.0 280 60.4
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 8.1e-92 341.3 278 60.4
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 1.8e-91 340.1 342 54.1
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 3.1e-91 339.3 322 57.8
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 4.0e-91 339.0 320 54.7
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 8.9e-91 337.8 324 55.2
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 8.9e-91 337.8 324 53.7
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 2.6e-90 336.3 291 56.7
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 2.6e-90 336.3 284 57.7
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 7.6e-90 334.7 287 57.8
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 9.9e-90 334.3 312 54.2
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 6.4e-89 331.6 259 61.0
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 1.4e-88 330.5 304 54.9
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 1.9e-88 330.1 241 61.4
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 2.4e-88 329.7 339 52.8
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 4.2e-88 328.9 365 49.0
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 2.1e-87 326.6 281 55.2
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 5.1e-86 322.0 213 70.0
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.9e-85 320.1 316 53.8
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.1e-83 314.3 313 53.0
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 6.9e-83 311.6 226 62.8
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.7e-81 307.0 322 48.8
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 7.1e-80 301.6 281 53.7
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.3e-78 297.4 323 51.1
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 6.6e-78 295.0 361 44.9
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 5.8e-74 282.0 229 56.8
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 1.1e-72 277.7 229 59.4
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 2.7e-71 273.1 274 48.9
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.0e-70 271.2 235 55.3
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.0e-70 271.2 194 66.0
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.0e-66 256.9 209 58.4
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 7.1e-64 248.4 210 55.7
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 2.7e-63 246.5 228 53.1
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 2.5e-61 240.0 228 50.0
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 2.5e-61 240.0 228 50.0
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 8.2e-60 235.0 153 68.0
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 1.4e-59 234.2 195 58.5
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 1.4e-59 234.2 160 66.2
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 2.0e-58 230.3 259 49.4
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 6.5e-57 225.3 257 41.6
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 7.9e-55 218.4 161 65.2
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 4.8e-52 209.1 138 68.1
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 3.4e-50 203.0 160 60.0
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 5.9e-50 202.2 193 50.8
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.3e-46 190.3 210 47.1
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 1.3e-44 184.5 249 37.8
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 3.1e-43 179.9 278 38.8
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 1.5e-42 177.6 116 67.2
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 6.1e-39 165.6 166 58.4
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 2.6e-37 160.2 187 46.5
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 1.7e-33 147.5 189 45.0
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 9.4e-32 141.7 107 56.1
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 9.1e-27 125.2 134 52.2
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 2.6e-26 123.6 316 31.3
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.0e-22 111.7 76 68.4
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 2.3e-22 110.5 122 50.8
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 5.7e-21 105.9 71 67.6
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 2.8e-20 103.6 269 29.7
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 1.8e-19 100.9 106 41.5
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 4.1e-19 99.8 72 59.7
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 2.0e-18 97.4 76 53.9
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 3.2e-16 90.1 116 44.0
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 8.0e-15 85.5 78 56.4
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 1.7e-09 67.8 36 75.0
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 1.6e-07 61.2 46 60.9
AL7G26190 Arabidopsis lyrata HOM05D004727 ORTHO05D079975 1.8e-06 57.8 37 67.6


User provided reference genes

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