Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G183800 Theobroma cacao HOM05D002831 ORTHO05D010484 1.3e-26 122.1 53 100.0
Gohir.D09G177300 Gossypium hirsutum HOM05D002831 ORTHO05D010484 3.5e-24 114.0 53 90.6
Gorai.006G199300 Gossypium raimondii HOM05D002831 ORTHO05D010484 4.6e-24 113.6 53 88.7
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.3e-23 112.1 52 92.3
Atru.ctg97_1.17 Acer truncatum HOM05D002831 ORTHO05D010484 3.0e-23 110.9 53 90.6
Gohir.A12G255400 Gossypium hirsutum HOM05D002831 ORTHO05D010484 1.6e-21 105.1 53 86.8
Gohir.D11G011200 Gossypium hirsutum HOM05D002831 ORTHO05D010484 1.6e-21 105.1 53 86.8
Gohir.D12G256800 Gossypium hirsutum HOM05D002831 ORTHO05D010484 1.6e-21 105.1 53 86.8
Gorai.008G275000 Gossypium raimondii HOM05D002831 ORTHO05D010484 1.6e-21 105.1 53 86.8
Gohir.A11G012000 Gossypium hirsutum HOM05D002831 ORTHO05D010484 2.1e-21 104.8 53 86.8
Manes.06G152150 Manihot esculenta HOM05D002831 ORTHO05D010484 4.8e-21 103.6 53 83.0
CiPaw.06G003400 Carya illinoinensis HOM05D002831 ORTHO05D010484 8.1e-21 102.8 53 86.8
CiPaw.06G003200 Carya illinoinensis HOM05D002831 ORTHO05D010484 1.4e-20 102.1 53 84.9
Potri.004G080000 Populus trichocarpa HOM05D002831 ORTHO05D010484 1.4e-20 102.1 53 83.0
Manes.14G022900 Manihot esculenta HOM05D002831 ORTHO05D010484 1.8e-20 101.7 53 81.1
MD01G1208000 Malus domestica HOM05D002831 ORTHO05D010484 2.4e-20 101.3 53 83.0
Prupe.2G300500 Prunus persica HOM05D002831 ORTHO05D010484 2.4e-20 101.3 53 83.0
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 9.0e-20 99.4 51 82.4
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 2.0e-19 98.2 52 78.8
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 3.4e-19 97.4 52 76.9
Prupe.7G027400 Prunus persica HOM05D002831 ORTHO05D010484 7.6e-19 96.3 51 78.4
Potri.017G143300 Populus trichocarpa HOM05D002831 ORTHO05D010484 1.3e-18 95.5 53 77.4
Peaxi162Scf00444g00118 Petunia axillaris HOM05D002831 ORTHO05D010484 2.2e-18 94.7 53 79.2
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 2.2e-18 94.7 52 76.9
MD07G1278600 Malus domestica HOM05D002831 ORTHO05D010484 2.9e-18 94.4 53 75.5
Nn1g01626 Nelumbo nucifera HOM05D002831 ORTHO05D010484 5.4e-17 90.1 53 75.5
Nitab4.5_0000084g0420 Nicotiana tabacum HOM05D002831 ORTHO05D010484 5.4e-17 90.1 52 76.9
Glyma.20G162551 Glycine max HOM05D002831 ORTHO05D010484 1.6e-16 88.6 53 71.7
Solyc03g007990.2 Solanum lycopersicum HOM05D002831 ORTHO05D010484 2.1e-16 88.2 53 75.5
CSS0001563 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 4.6e-16 87.0 53 69.8
CSS0038907 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 4.6e-16 87.0 53 69.8
Carub.0008s1269 Capsella rubella HOM05D002831 ORTHO05D010484 4.6e-16 87.0 53 71.7
Glyma.09G132600 Glycine max HOM05D002831 ORTHO05D010484 4.6e-16 87.0 53 73.6
Glyma.16G179250 Glycine max HOM05D002831 ORTHO05D010484 4.6e-16 87.0 53 73.6
CAN.G126.13 Capsicum annuum HOM05D002831 ORTHO05D010484 7.9e-16 86.3 53 75.5
ClCG05G008350 Citrullus lanatus HOM05D002831 ORTHO05D010484 7.9e-16 86.3 53 73.6
CiPaw.12G018400 Carya illinoinensis HOM05D002831 ORTHO05D010484 1.3e-15 85.5 44 86.4
FAN03G0192 Fragaria x ananassa HOM05D002831 ORTHO05D010484 1.3e-15 85.5 52 76.9
Glyma.10G231251 Glycine max HOM05D002831 ORTHO05D010484 1.3e-15 85.5 53 66.0
Lalb_Chr02g0141241 Lupinus albus HOM05D002831 ORTHO05D010484 2.3e-15 84.7 54 72.2
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 3.9e-15 84.0 44 84.1
Nitab4.5_0003825g0100 Nicotiana tabacum HOM05D002831 ORTHO05D010484 6.7e-15 83.2 52 75.0
Cc02_g02410 Coffea canephora HOM05D002831 ORTHO05D010484 8.7e-15 82.8 53 69.8
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.9e-14 81.6 44 81.8
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 5.6e-14 80.1 43 79.1
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 7.4e-14 79.7 46 71.7
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 9.6e-14 79.3 44 79.5
Carub.0007s1529 Capsella rubella HOM05D002831 ORTHO05D010484 1.3e-13 79.0 53 64.2
CARHR233120 Cardamine hirsuta HOM05D002831 ORTHO05D010484 2.1e-13 78.2 53 66.0
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 2.1e-13 78.2 48 70.8
Lalb_Chr03g0034821 Lupinus albus HOM05D002831 ORTHO05D010484 3.7e-13 77.4 50 66.0
Lalb_Chr21g0305231 Lupinus albus HOM05D002831 ORTHO05D010484 3.7e-13 77.4 54 66.7
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 4.0e-12 73.9 45 68.9
BolC1t02050H Brassica oleracea HOM05D002831 ORTHO05D010484 6.9e-12 73.2 53 62.3
CAN.G204.17 Capsicum annuum HOM05D002831 ORTHO05D010484 9.0e-12 72.8 53 66.0
CSS0020125 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 1.5e-11 72.0 53 62.3
CSS0026204 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 1.5e-11 72.0 53 62.3
BraA01t01649Z Brassica rapa HOM05D002831 ORTHO05D010484 2.0e-11 71.6 53 60.4
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 7.6e-11 69.7 48 66.7
A03p56200 Brassica napus HOM05D002831 ORTHO05D010484 3.8e-10 67.4 53 58.5
BolC1t02047H Brassica oleracea HOM05D002831 ORTHO05D010484 3.8e-10 67.4 53 60.4
BraA01t01646Z Brassica rapa HOM05D002831 ORTHO05D010484 3.8e-10 67.4 53 60.4
BraA03t14690Z Brassica rapa HOM05D002831 ORTHO05D010484 3.8e-10 67.4 53 58.5
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 6.4e-10 66.6 43 67.4
BolC7t45935H Brassica oleracea HOM05D002831 ORTHO05D010484 3.2e-09 64.3 53 56.6
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 4.2e-09 63.9 47 59.6
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 7.1e-09 63.2 43 62.8
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.6e-08 62.0 53 54.7
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 2.7e-08 61.2 46 54.3
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 4.6e-08 60.5 44 70.5
Sabra05G0003700 Salix brachista HOM05D000273 ORTHO05D000198 4.6e-08 60.5 37 70.3
A02p11710 Brassica napus HOM05D002831 ORTHO05D010484 6.0e-08 60.1 37 67.6
Lalb_Chr06g0161311 Lupinus albus HOM05D002831 ORTHO05D010484 6.0e-08 60.1 44 65.9
Peaxi162Scf00618g00726 Petunia axillaris HOM05D002831 ORTHO05D010484 1.0e-07 59.3 44 65.9
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 5.1e-07 57.0 32 78.1
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 5.1e-07 57.0 32 78.1
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 1.1e-06 55.8 47 53.2
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 1.1e-06 55.8 39 61.5
CARHR233140 Cardamine hirsuta HOM05D002831 ORTHO05D010484 2.5e-06 54.7 33 66.7
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 3.3e-06 54.3 48 56.2
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 7.4e-06 53.1 31 74.2


User provided reference genes

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