Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G179600 Theobroma cacao HOM05D008240 ORTHO05D010333 5.7e-46 187.2 93 100.0
COL.COLO4_03572 Corchorus olitorius HOM05D008240 ORTHO05D010333 9.5e-25 116.7 66 86.4
COL.COLO4_28004 Corchorus olitorius HOM05D008240 ORTHO05D010333 9.5e-25 116.7 66 86.4
Gorai.008G276000 Gossypium raimondii HOM05D008240 ORTHO05D010333 1.4e-20 102.8 63 77.8
Gohir.D12G257700 Gossypium hirsutum HOM05D008240 ORTHO05D010333 1.9e-20 102.4 63 77.8
Haze_00010 Corylus avellana HOM05D008240 ORTHO05D010333 9.2e-20 100.1 58 81.0
Gohir.A12G256400 Gossypium hirsutum HOM05D008240 ORTHO05D010333 9.2e-20 100.1 63 76.2
Actinidia34129 Actinidia chinensis HOM05D000206 ORTHO05D002863 2.7e-19 98.6 55 83.6
Dinv28418 Davidia involucrata HOM05D008240 ORTHO05D002863 3.5e-19 98.2 58 79.3
Manes.06G149600 Manihot esculenta HOM05D008240 ORTHO05D010333 3.5e-19 98.2 60 76.7
VMungo1127G0785 Vigna mungo HOM05D008240 ORTHO05D010333 1.0e-18 96.7 61 78.7
Ciclev10006392m.g Citrus clementina HOM05D008240 ORTHO05D010333 1.3e-18 96.3 58 79.3
Manes.14G024900 Manihot esculenta HOM05D008240 ORTHO05D010333 1.7e-18 95.9 60 76.7
Phvul.011G006600 Phaseolus vulgaris HOM05D008240 ORTHO05D010333 1.7e-18 95.9 61 77.0
Sc13g0008860 Simmondsia chinensis HOM05D008240 ORTHO05D010333 3.0e-18 95.1 66 68.2
CiPaw.06G002300 Carya illinoinensis HOM05D008240 ORTHO05D010333 3.9e-18 94.7 63 74.6
vmacro06659 Vaccinium macrocarpon HOM05D000206 ORTHO05D002863 3.9e-18 94.7 55 81.8
Hma1.2p1_0227F.1_g095850 Hydrangea macrophylla HOM05D008240 ORTHO05D010333 5.1e-18 94.4 53 84.9
Glyma.12G005800 Glycine max HOM05D008240 ORTHO05D010333 6.6e-18 94.0 62 75.8
Psat6g197280 Pisum sativum HOM05D008240 ORTHO05D010333 1.1e-17 93.2 57 75.4
CSS0023725 Camellia sinensis var. sinensis HOM05D008240 ORTHO05D010333 2.5e-17 92.0 62 77.4
TPR.G27012 Trifolium pratense HOM05D008240 ORTHO05D010333 7.3e-17 90.5 50 84.0
Medtr1g100890 Medicago truncatula HOM05D008240 ORTHO05D010333 9.6e-17 90.1 57 71.9
Lalb_Chr21g0305111 Lupinus albus HOM05D008240 ORTHO05D010333 1.2e-16 89.7 56 80.4
Atru.chr1.425 Acer truncatum HOM05D008240 ORTHO05D010333 1.6e-16 89.4 62 77.4
arahy.Tifrunner.gnm1.ann1.ES0TVM Arachis hypogaea HOM05D008240 ORTHO05D010333 2.8e-16 88.6 60 73.3
Cpa.g.sc107.72 Carica papaya HOM05D008240 ORTHO05D010333 3.6e-16 88.2 66 65.2
Prupe.2G297100 Prunus persica HOM05D008240 ORTHO05D010333 6.2e-16 87.4 48 85.4
arahy.Tifrunner.gnm1.ann1.MUHC0Z Arachis hypogaea HOM05D002671 ORTHO05D010333 1.1e-15 86.7 65 67.7
RcHm_v2.0_Chr1g0377781 Rosa chinensis HOM05D008240 ORTHO05D010333 1.1e-15 86.7 48 83.3
AUR62021162 Chenopodium quinoa HOM05D008240 ORTHO05D010333 2.4e-15 85.5 66 68.2
Glyma.09G230900 Glycine max HOM05D008240 ORTHO05D010333 3.1e-15 85.1 61 72.1
Nn6g33426 Nelumbo nucifera HOM05D008240 ORTHO05D010333 3.1e-15 85.1 64 59.4
Potri.001G178400 Populus trichocarpa HOM05D008240 ORTHO05D010333 3.1e-15 85.1 56 75.0
EL10Ac3g05606 Beta vulgaris HOM05D008240 ORTHO05D010333 1.5e-14 82.8 61 62.3
FvH4_7g29780 Fragaria vesca HOM05D008240 ORTHO05D010333 2.0e-14 82.4 45 82.2
EL10Ac3g05605 Beta vulgaris HOM05D008240 ORTHO05D010333 3.4e-14 81.6 59 64.4
Oeu045392.1 Olea europaea HOM05D008240 ORTHO05D010333 3.4e-14 81.6 51 74.5
Sabra01G0148200 Salix brachista HOM05D008240 ORTHO05D010333 3.4e-14 81.6 53 75.5
Lsat_1_v5_gn_9_55121 Lactuca sativa HOM05D008240 ORTHO05D010333 1.7e-13 79.3 59 67.8
ClCG10G005770 Citrullus lanatus HOM05D008240 ORTHO05D010333 3.8e-13 78.2 52 69.2
GSVIVG01028913001 Vitis vinifera HOM05D008240 ORTHO05D010333 3.8e-13 78.2 45 82.2
MELO3C025428.2 Cucumis melo HOM05D008240 ORTHO05D010333 6.4e-13 77.4 52 69.2
DCAR_020258 Daucus carota HOM05D008240 ORTHO05D010333 1.4e-12 76.3 42 83.3
Aqoxy7G00310 Aquilegia oxysepala HOM05D008240 ORTHO05D010333 2.4e-12 75.5 56 62.5
A06p18700 Brassica napus HOM05D002671 ORTHO05D010333 4.2e-12 74.7 65 60.0
Carub.0005s1524 Capsella rubella HOM05D008240 ORTHO05D010333 7.1e-12 73.9 54 66.7
CARHR157860 Cardamine hirsuta HOM05D008240 ORTHO05D010333 9.3e-12 73.6 57 63.2
BolC8t50025H Brassica oleracea HOM05D008240 ORTHO05D010333 2.7e-11 72.0 50 68.0
BraA06t24953Z Brassica rapa HOM05D008240 ORTHO05D010333 2.7e-11 72.0 50 66.0
CsaV3_3G005460 Cucumis sativus L. HOM05D008240 ORTHO05D010333 2.7e-11 72.0 52 65.4
Solyc03g025480.4 Solanum lycopersicum HOM05D008240 ORTHO05D010333 3.5e-11 71.6 63 54.0
Sopen03g004320 Solanum pennellii HOM05D008240 ORTHO05D010333 3.5e-11 71.6 63 54.0
Sed0005066 Sechium edule HOM05D008240 ORTHO05D010333 1.0e-10 70.1 44 70.5
CAN.G1175.10 Capsicum annuum HOM05D008240 ORTHO05D010333 2.3e-10 68.9 46 69.6
Peaxi162Scf00444g00412 Petunia axillaris HOM05D008240 ORTHO05D010333 3.0e-10 68.6 50 68.0
PGSC0003DMG400015797 Solanum tuberosum HOM05D008240 ORTHO05D010333 3.9e-10 68.2 61 54.1
Migut.F01103 Erythranthe guttata HOM05D008240 ORTHO05D010333 3.3e-09 65.1 54 57.4
Os07g0175200 Oryza sativa ssp. japonica HOM05D008240 ORTHO05D010333 6.2e-08 60.8 44 63.6
QL07p048914 Quercus lobata HOM05D008240 ORTHO05D010333 1.8e-07 59.3 34 79.4
Nitab4.5_0000885g0010 Nicotiana tabacum HOM05D011433 ORTHO05D010333 3.1e-07 58.5 53 52.8
Nitab4.5_0004439g0090 Nicotiana tabacum HOM05D008240 ORTHO05D010333 3.1e-07 58.5 34 73.5
COL.COLO4_34154 Corchorus olitorius HOM05D008240 ORTHO05D010333 4.0e-07 58.2 32 84.4
Nitab4.5_0000084g0100 Nicotiana tabacum HOM05D008240 ORTHO05D010333 6.9e-07 57.4 40 70.0
Thecc.01G359100 Theobroma cacao HOM05D011433 ORTHO05D013366 6.9e-07 57.4 61 49.2
Gohir.D07G148300 Gossypium hirsutum HOM05D011433 ORTHO05D013366 3.4e-06 55.1 60 46.7
Gohir.A07G142400 Gossypium hirsutum HOM05D011433 ORTHO05D013366 9.9e-06 53.5 60 45.0
Gorai.001G169500 Gossypium raimondii HOM05D011433 ORTHO05D013366 9.9e-06 53.5 60 45.0


User provided reference genes

Program Settings