Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G175000 Theobroma cacao HOM05D012645 ORTHO05D011500 7.3e-43 176.8 88 100.0
COL.COLO4_14293 Corchorus olitorius HOM05D012645 ORTHO05D011500 4.2e-22 107.8 84 71.4
Gohir.A12G258500 Gossypium hirsutum HOM05D012645 ORTHO05D011500 1.9e-19 99.0 92 60.9
Gohir.A01G118366 Gossypium hirsutum HOM05D012645 ORTHO05D011500 1.6e-18 95.9 88 59.1
Gohir.A08G100200 Gossypium hirsutum HOM05D012645 ORTHO05D011500 1.6e-18 95.9 88 59.1
Gohir.D08G111100 Gossypium hirsutum HOM05D012645 ORTHO05D011500 2.2e-18 95.5 88 60.2
Gorai.004G119100 Gossypium raimondii HOM05D012645 ORTHO05D011500 3.7e-18 94.7 88 59.1
Gohir.D12G259750 Gossypium hirsutum HOM05D012645 ORTHO05D011500 9.0e-17 90.1 91 56.0
Gorai.008G278200 Gossypium raimondii HOM05D012645 ORTHO05D011500 1.5e-16 89.4 92 55.4
Manes.06G146100 Manihot esculenta HOM05D012645 ORTHO05D011500 9.4e-14 80.1 80 57.5
CiPaw.04G065300 Carya illinoinensis HOM05D012645 ORTHO05D011500 2.3e-12 75.5 88 50.0
CSS0030299 Camellia sinensis var. sinensis HOM05D012645 ORTHO05D010731 3.0e-12 75.1 88 47.7
Thecc.03G175100 Theobroma cacao HOM05D015019 ORTHO05D013840 2.2e-10 68.9 88 42.0
Manes.14G026900 Manihot esculenta HOM05D015019 ORTHO05D013840 3.7e-10 68.2 83 49.4
Potri.015G139966 Populus trichocarpa HOM05D010814 ORTHO05D011500 3.4e-08 61.6 89 39.3
Dinv35204 Davidia involucrata HOM05D061900 ORTHO05D019092 4.5e-08 61.2 66 47.0
Prupe.2G292900 Prunus persica HOM05D016143 ORTHO05D020738 4.5e-08 61.2 90 40.0
Rhsim03G0179400 Rhododendron simsii HOM05D019148 ORTHO05D019092 1.0e-07 60.1 89 41.6
Gohir.A09G180600 Gossypium hirsutum HOM05D015019 ORTHO05D013840 1.7e-07 59.3 88 34.1
Manes.01G064900 Manihot esculenta HOM05D008852 ORTHO05D010731 2.2e-07 58.9 79 40.5
Manes.14G027000 Manihot esculenta HOM05D012645 ORTHO05D011500 2.9e-07 58.5 82 43.9
Thecc.03G275000 Theobroma cacao HOM05D008852 ORTHO05D010731 5.0e-07 57.8 88 39.8
Potri.012G138200 Populus trichocarpa HOM05D010814 ORTHO05D011500 6.5e-07 57.4 89 38.2
Glyma.10G237100 Glycine max HOM05D010814 ORTHO05D011500 1.4e-06 56.2 85 45.9
Gohir.D08G198700 Gossypium hirsutum HOM05D008852 ORTHO05D010731 1.9e-06 55.8 91 38.5
Gohir.A08G179900 Gossypium hirsutum HOM05D008852 ORTHO05D010731 2.5e-06 55.5 91 38.5
Gohir.D09G175500 Gossypium hirsutum HOM05D015019 ORTHO05D013840 3.2e-06 55.1 88 31.8
Gorai.004G209500 Gossypium raimondii HOM05D008852 ORTHO05D010731 3.2e-06 55.1 91 38.5
Gorai.006G197600 Gossypium raimondii HOM05D015019 ORTHO05D013840 3.2e-06 55.1 88 31.8
Lalb_Chr03g0034461 Lupinus albus HOM05D010814 ORTHO05D011500 4.2e-06 54.7 88 40.9
Manes.06G146200 Manihot esculenta HOM05D015019 ORTHO05D013840 5.5e-06 54.3 88 43.2
Nitab4.5_0000716g0190 Nicotiana tabacum HOM05D024208 ORTHO05D025948 7.2e-06 53.9 89 37.1


User provided reference genes

Program Settings