Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G174500 Theobroma cacao HOM05D006363 ORTHO05D007920 2.7e-109 398.7 203 100.0
Duzib205G1779 Durio zibethinus HOM05D006363 ORTHO05D007920 1.7e-98 362.8 203 92.1
Gorai.008G278600 Gossypium raimondii HOM05D006363 ORTHO05D007920 5.4e-97 357.8 203 91.1
Gohir.A12G258900 Gossypium hirsutum HOM05D006363 ORTHO05D007920 1.6e-96 356.3 203 91.1
COL.COLO4_14288 Corchorus olitorius HOM05D006363 ORTHO05D007920 4.5e-96 354.8 203 90.6
Gohir.D12G260100 Gossypium hirsutum HOM05D006363 ORTHO05D007920 5.9e-96 354.4 203 90.1
Ciclev10007013m.g Citrus clementina HOM05D006363 ORTHO05D007920 4.3e-86 321.6 200 82.5
FvH4_7g29240 Fragaria vesca HOM05D006363 ORTHO05D007920 1.2e-85 320.1 197 84.3
FAN06G3928 Fragaria x ananassa HOM05D006363 ORTHO05D007920 1.2e-85 320.1 197 84.3
FAN06G3284 Fragaria x ananassa HOM05D006363 ORTHO05D007920 1.6e-85 319.7 197 84.3
Sabra15G0151200 Salix brachista HOM05D006363 ORTHO05D007920 2.1e-85 319.3 204 79.9
Cfa008303 Carpinus fangiana HOM05D006363 ORTHO05D007920 3.6e-85 318.5 197 81.2
FAN10G0438 Fragaria x ananassa HOM05D006363 ORTHO05D007920 8.0e-85 317.4 197 83.2
RcHm_v2.0_Chr1g0376991 Rosa chinensis HOM05D006363 ORTHO05D007920 8.0e-85 317.4 197 83.8
QL09p014582 Quercus lobata HOM05D006363 ORTHO05D007920 4.0e-84 315.1 203 79.8
Haze_13734 Corylus avellana HOM05D006363 ORTHO05D007920 8.9e-84 313.9 197 80.7
Glyma.20G157100 Glycine max HOM05D006363 ORTHO05D007920 1.2e-83 313.5 196 82.7
Potri.015G140600 Populus trichocarpa HOM05D006363 ORTHO05D007920 1.5e-83 313.2 199 80.4
TWI39G0139 Tripterygium wilfordii HOM05D006363 ORTHO05D007920 3.4e-83 312.0 204 77.9
FAN03G1027 Fragaria x ananassa HOM05D006363 ORTHO05D007920 9.8e-83 310.5 197 82.2
VMungo0720G1872 Vigna mungo HOM05D006363 ORTHO05D007920 9.8e-83 310.5 196 81.1
Ca_10782_v3 Cicer arietinum L. HOM05D006363 ORTHO05D007920 6.4e-82 307.8 198 80.3
CiPaw.03G104700 Carya illinoinensis HOM05D006363 ORTHO05D007920 8.3e-82 307.4 197 80.2
Psat6g200600 Pisum sativum HOM05D006363 ORTHO05D007920 1.4e-81 306.6 197 80.2
Phvul.007G068100 Phaseolus vulgaris HOM05D006363 ORTHO05D007920 1.9e-81 306.2 194 80.4
Medtr1g100753 Medicago truncatula HOM05D006363 ORTHO05D007920 4.1e-81 305.1 197 80.2
Prupe.2G292400 Prunus persica HOM05D006363 ORTHO05D007920 4.1e-81 305.1 201 79.6
Glyma.10G237500 Glycine max HOM05D006363 ORTHO05D007920 5.4e-81 304.7 197 80.7
TPR.G14326 Trifolium pratense HOM05D006363 ORTHO05D007920 7.0e-81 304.3 197 80.2
PGR042G3170 Punica granatum HOM05D006363 ORTHO05D007920 3.5e-80 302.0 206 75.7
Cpa.g.sc107.33 Carica papaya HOM05D006363 ORTHO05D007920 4.6e-80 301.6 204 75.0
Atru.chr1.482 Acer truncatum HOM05D006363 ORTHO05D007920 6.0e-80 301.2 198 79.3
LjContig00238g0019616 Lotus japonicus HOM05D006363 ORTHO05D007920 1.0e-79 300.4 197 79.2
MD01G1199000 Malus domestica HOM05D006363 ORTHO05D007920 1.7e-79 299.7 197 78.7
FAN03G1282 Fragaria x ananassa HOM05D006363 ORTHO05D007920 2.3e-79 299.3 197 80.7
MD07G1266800 Malus domestica HOM05D006363 ORTHO05D007920 2.3e-79 299.3 197 80.2
CsaV3_3G016980 Cucumis sativus L. HOM05D006363 ORTHO05D007920 1.9e-78 296.2 196 76.0
Manes.07G111200 Manihot esculenta HOM05D006363 ORTHO05D007920 2.5e-78 295.8 195 79.0
MELO3C006895.2 Cucumis melo HOM05D006363 ORTHO05D007920 3.3e-78 295.4 196 76.0
Sed0019375 Sechium edule HOM05D006363 ORTHO05D007920 2.1e-77 292.7 200 76.0
Eucgr.A02801 Eucalyptus grandis HOM05D006363 ORTHO05D007920 4.0e-76 288.5 205 73.2
vmacro09843 Vaccinium macrocarpon HOM05D006363 ORTHO05D007920 5.2e-76 288.1 196 74.0
CSS0028509 Camellia sinensis var. sinensis HOM05D006363 ORTHO05D007920 2.0e-75 286.2 198 73.2
Lalb_Chr02g0140961 Lupinus albus HOM05D006363 ORTHO05D007920 2.6e-75 285.8 204 70.6
Dinv28459 Davidia involucrata HOM05D006363 ORTHO05D007920 3.4e-75 285.4 200 72.0
Rhsim09G0197500 Rhododendron simsii HOM05D006363 ORTHO05D007920 3.4e-75 285.4 196 72.4
THA.LOC104811988 Tarenaya hassleriana HOM05D006363 ORTHO05D007920 7.5e-75 284.3 203 72.4
Migut.F01133 Erythranthe guttata HOM05D006363 ORTHO05D007920 1.3e-74 283.5 195 71.3
Peaxi162Scf00915g00018 Petunia axillaris HOM05D006363 ORTHO05D007920 2.2e-74 282.7 202 71.3
CSS0002932 Camellia sinensis var. sinensis HOM05D006363 ORTHO05D007920 2.9e-74 282.3 198 73.2
EL10Ac3g05667 Beta vulgaris HOM05D006363 ORTHO05D007920 6.4e-74 281.2 194 71.1
CARHR265110 Cardamine hirsuta HOM05D006363 ORTHO05D007920 6.4e-74 281.2 198 72.7
AUR62016007 Chenopodium quinoa HOM05D006363 ORTHO05D007920 6.4e-74 281.2 193 72.0
Lj8C25T12 Lonicera japonica HOM05D006363 ORTHO05D007920 1.1e-73 280.4 196 71.4
Thhalv10015742m.g Eutrema salsugineum HOM05D006363 ORTHO05D007920 1.9e-73 279.6 197 72.6
AUR62021214 Chenopodium quinoa HOM05D006363 ORTHO05D007920 3.2e-73 278.9 195 70.8
GSVIVG01010552001 Vitis vinifera HOM05D006363 ORTHO05D007920 3.2e-73 278.9 204 70.6
Oeu062762.2 Olea europaea HOM05D006363 ORTHO05D007920 9.2e-73 277.3 201 69.7
CANSAT21G2254 Cannabis sativa HOM05D006363 ORTHO05D007920 1.6e-72 276.6 197 72.6
Sopen03g004810 Solanum pennellii HOM05D006363 ORTHO05D007920 1.6e-72 276.6 195 72.8
Solyc03g025990.1 Solanum lycopersicum HOM05D006363 ORTHO05D007920 2.1e-72 276.2 195 72.8
MSTRG.8448 Avicennia marina HOM05D006363 ORTHO05D007920 3.5e-72 275.4 195 71.3
CANSAT21G0627 Cannabis sativa HOM05D006363 ORTHO05D007920 3.5e-72 275.4 197 73.1
Cc03_g13850 Coffea canephora HOM05D006363 ORTHO05D007920 1.0e-71 273.9 198 70.2
PGSC0003DMG400014325 Solanum tuberosum HOM05D006363 ORTHO05D007920 1.3e-71 273.5 202 69.3
Carub.0008s1228 Capsella rubella HOM05D006363 ORTHO05D007920 2.3e-71 272.7 198 71.7
BcaC01g06171 Brassica carinata HOM05D006363 ORTHO05D007920 6.6e-71 271.2 197 71.6
BraA03t10870Z Brassica rapa HOM05D006363 ORTHO05D007920 6.6e-71 271.2 197 71.6
BolC3t14244H Brassica oleracea HOM05D006363 ORTHO05D007920 1.9e-70 269.6 197 71.1
Nn6g34197 Nelumbo nucifera HOM05D006363 ORTHO05D007920 2.5e-70 269.2 203 67.0
Aa31LG3G8570 Aethionema arabicum HOM05D006363 ORTHO05D007920 3.3e-70 268.9 197 69.5
BcaB01g04190 Brassica carinata HOM05D006363 ORTHO05D007920 3.3e-70 268.9 197 71.1
C03p18470 Brassica napus HOM05D006363 ORTHO05D007920 7.3e-70 267.7 197 70.6
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 2.8e-69 265.8 187 71.1
AL8G26570 Arabidopsis lyrata HOM05D006363 ORTHO05D007920 2.8e-69 265.8 201 69.7
HanXRQChr14g0462221 Helianthus annuus HOM05D006363 ORTHO05D007920 2.8e-69 265.8 196 68.9
Nitab4.5_0001508g0030 Nicotiana tabacum HOM05D006363 ORTHO05D007920 8.1e-69 264.2 202 66.8
AT5G52190 Arabidopsis thaliana HOM05D006363 ORTHO05D007920 1.1e-68 263.8 201 68.2
Lsat_1_v5_gn_2_133820 Lactuca sativa HOM05D006363 ORTHO05D007920 1.1e-68 263.8 197 68.5
Nitab4.5_0000716g0210 Nicotiana tabacum HOM05D006363 ORTHO05D007920 1.8e-68 263.1 193 69.4
Sp6g14440 Schrenkiella parvula HOM05D006363 ORTHO05D007920 3.1e-68 262.3 209 68.4
ECA238G0548 Erigeron canadensis HOM05D006363 ORTHO05D007920 5.2e-68 261.5 200 69.0
Aqoxy7G00395 Aquilegia oxysepala HOM05D006363 ORTHO05D007920 7.6e-67 257.7 204 66.2
PSO782G5704 Papaver somniferum HOM05D006363 ORTHO05D007920 3.2e-65 252.3 215 59.5
unitig_60.g25545 Utricularia gibba HOM05D006363 ORTHO05D007920 7.1e-65 251.1 196 66.3
TAR375G0304 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.6e-64 250.0 187 67.9
DCAR_018188 Daucus carota HOM05D006363 ORTHO05D007920 4.6e-64 248.4 197 61.9
PSO478G1739 Papaver somniferum HOM05D006363 ORTHO05D007920 1.3e-63 246.9 214 59.8
MBI04_g04731_MAGBIO Magnolia biondii HOM05D006363 ORTHO05D007920 6.6e-63 244.6 202 62.4
CAN.G947.11 Capsicum annuum HOM05D006363 ORTHO05D007920 2.4e-60 236.1 195 66.7
FAN01G1422 Fragaria x ananassa HOM05D006363 ORTHO05D007920 8.9e-60 234.2 197 66.5
Zm00001eb428810 Zea mays HOM05D006363 ORTHO05D007920 1.1e-57 227.3 215 57.7
CDE04G1845 Ceratophyllum demersum HOM05D006363 ORTHO05D007920 7.8e-56 221.1 196 61.7
Os04g0568600 Oryza sativa ssp. japonica HOM05D006363 ORTHO05D007920 2.3e-55 219.5 193 60.1
ATR0757G111 Amborella trichopoda HOM05D006363 ORTHO05D007920 8.1e-53 211.1 200 55.5
A03p15800 Brassica napus HOM05D006363 ORTHO05D007920 3.1e-52 209.1 143 76.2
HPP92_021110 Vanilla planifolia HOM05D006363 ORTHO05D007920 5.3e-52 208.4 176 61.9
Sc25g0000440 Simmondsia chinensis HOM05D006363 ORTHO05D007920 2.3e-47 193.0 149 67.1
SalBow2G2214 Salvia bowleyana HOM05D006363 ORTHO05D007920 2.9e-42 176.0 142 64.1
SEGI_31787 Sequoiadendron giganteum HOM05D006363 ORTHO05D007920 2.4e-41 172.9 200 50.0
Pp3c6_24270 Physcomitrium patens HOM05D006363 ORTHO05D007920 1.2e-40 170.6 209 46.9
SMO367G0077 Selaginella moellendorffii HOM05D006363 ORTHO05D007920 6.7e-39 164.9 170 55.9
A08p37210 Brassica napus HOM05D006363 ORTHO05D007920 3.4e-35 152.5 129 65.1
BcaC01g06168 Brassica carinata HOM05D006363 ORTHO05D007920 7.2e-25 118.2 92 66.3
BcaC06g36545 Brassica carinata HOM05D006363 ORTHO05D007920 2.3e-23 113.2 86 67.4
Mapoly0047s0087 Marchantia polymorpha HOM05D006363 ORTHO05D007920 2.2e-21 106.7 109 55.0
TPR.G33086 Trifolium pratense HOM05D006363 ORTHO05D007920 8.5e-18 94.7 60 81.7
BolC5t32613H Brassica oleracea HOM05D006363 ORTHO05D007920 1.9e-17 93.6 66 69.7
C05p38730 Brassica napus HOM05D006363 ORTHO05D007920 7.2e-17 91.7 66 68.2
Pp3c17_12800 Physcomitrium patens HOM05D006363 ORTHO05D007920 9.4e-17 91.3 318 27.0
TAR633G0106 Trochodendron aralioides HOM05D006363 ORTHO05D007920 2.1e-16 90.1 99 50.5
Actinidia03116 Actinidia chinensis HOM05D006363 ORTHO05D007920 7.9e-16 88.2 112 50.9
BcaC01g06167 Brassica carinata HOM05D006363 ORTHO05D007920 6.7e-15 85.1 50 82.0
TAR291G0005 Trochodendron aralioides HOM05D006363 ORTHO05D007920 8.8e-15 84.7 96 51.0
TAR375G0495 Trochodendron aralioides HOM05D006363 ORTHO05D007920 8.8e-15 84.7 96 51.0
TAR614G0003 Trochodendron aralioides HOM05D006363 ORTHO05D007920 8.8e-15 84.7 104 49.0
TAR624G1193 Trochodendron aralioides HOM05D006363 ORTHO05D007920 8.8e-15 84.7 96 51.0
TAR633G1276 Trochodendron aralioides HOM05D006363 ORTHO05D007920 4.3e-14 82.4 96 51.0
TAR383G0849 Trochodendron aralioides HOM05D003653 ORTHO05D004249 5.7e-14 82.0 96 50.0
TAR629G0450 Trochodendron aralioides HOM05D006363 ORTHO05D007920 7.4e-14 81.6 96 50.0
BcaC05g27871 Brassica carinata HOM05D006363 ORTHO05D007920 6.1e-08 62.0 103 42.7


User provided reference genes

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