Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 2.5e-50 201.8 104 100.0
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 2.9e-30 135.2 104 67.3
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 4.9e-30 134.4 98 70.4
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 9.6e-26 120.2 99 63.6
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 9.6e-26 120.2 98 65.3
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 1.3e-25 119.8 94 62.8
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.6e-25 119.4 98 65.3
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.6e-25 119.4 98 65.3
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 1.6e-25 119.4 98 65.3
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 2.1e-25 119.0 98 64.3
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 2.1e-25 119.0 98 64.3
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 2.8e-25 118.6 99 64.6
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 1.1e-24 116.7 97 62.9
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 3.1e-24 115.2 98 60.2
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 1.5e-23 112.8 101 59.4
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 2.0e-23 112.5 98 57.1
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 4.5e-23 111.3 100 54.0
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 1.3e-22 109.8 92 58.7
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 1.7e-22 109.4 97 56.7
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 2.2e-22 109.0 86 54.7
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 2.2e-22 109.0 81 63.0
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 2.9e-22 108.6 98 54.1
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 6.5e-22 107.5 89 56.2
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 1.4e-21 106.3 83 65.1
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 3.2e-21 105.1 99 54.5
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 4.2e-21 104.8 97 51.5
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 5.5e-21 104.4 85 60.0
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 7.2e-21 104.0 98 51.0
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 1.6e-20 102.8 91 54.9
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 2.7e-20 102.1 84 57.1
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 6.1e-20 100.9 93 55.9
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 6.1e-20 100.9 85 55.3
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 6.1e-20 100.9 100 52.0
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 6.1e-20 100.9 90 52.2
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 7.9e-20 100.5 83 59.0
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 1.8e-19 99.4 84 52.4
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 1.8e-19 99.4 100 51.0
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 1.8e-19 99.4 93 54.8
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 1.8e-19 99.4 81 58.0
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 3.0e-19 98.6 85 54.1
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 3.9e-19 98.2 91 50.5
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 3.9e-19 98.2 98 50.0
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 6.7e-19 97.4 84 58.3
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 6.7e-19 97.4 62 64.5
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 8.7e-19 97.1 85 54.1
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 8.7e-19 97.1 100 55.0
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 8.7e-19 97.1 102 54.9
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 8.7e-19 97.1 62 62.9
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 1.1e-18 96.7 87 50.6
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 1.1e-18 96.7 96 52.1
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 1.5e-18 96.3 83 55.4
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 1.5e-18 96.3 87 54.0
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 1.9e-18 95.9 89 50.6
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 1.9e-18 95.9 99 49.5
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 2.5e-18 95.5 85 57.6
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 3.3e-18 95.1 80 55.0
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 3.3e-18 95.1 96 45.8
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 4.3e-18 94.7 95 58.9
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 5.7e-18 94.4 81 54.3
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 5.7e-18 94.4 82 58.5
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 5.7e-18 94.4 81 55.6
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 7.4e-18 94.0 100 55.0
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 9.7e-18 93.6 87 52.9
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 9.7e-18 93.6 63 65.1
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 9.7e-18 93.6 96 45.8
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 1.6e-17 92.8 67 62.7
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.6e-17 92.8 84 53.6
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 2.2e-17 92.4 89 49.4
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 2.2e-17 92.4 85 47.1
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 2.8e-17 92.0 86 50.0
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 2.8e-17 92.0 99 47.5
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 2.8e-17 92.0 97 47.4
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 3.7e-17 91.7 84 53.6
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 3.7e-17 91.7 63 61.9
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 3.7e-17 91.7 79 55.7
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 3.7e-17 91.7 98 52.0
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 4.8e-17 91.3 86 53.5
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 4.8e-17 91.3 78 55.1
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 4.8e-17 91.3 81 60.5
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 6.3e-17 90.9 93 50.5
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 6.3e-17 90.9 80 53.8
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 6.3e-17 90.9 85 55.3
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.1e-16 90.1 93 50.5
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.4e-16 89.7 74 55.4
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 1.4e-16 89.7 63 60.3
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 2.4e-16 89.0 80 47.5
Nn8g41026 Nelumbo nucifera HOM05D005649 ORTHO05D006837 2.4e-16 89.0 97 48.5
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 3.1e-16 88.6 87 51.7
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 3.1e-16 88.6 93 49.5
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 3.1e-16 88.6 87 51.7
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 3.1e-16 88.6 83 50.6
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 4.1e-16 88.2 93 49.5
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 4.1e-16 88.2 93 49.5
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 4.1e-16 88.2 93 49.5
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 4.1e-16 88.2 93 46.2
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 5.3e-16 87.8 89 49.4
BcaB08g35564 Brassica carinata HOM05D005649 ORTHO05D006837 6.9e-16 87.4 62 61.3
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 6.9e-16 87.4 101 46.5
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 6.9e-16 87.4 86 53.5
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 9.0e-16 87.0 81 53.1
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 1.2e-15 86.7 91 47.3
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 1.2e-15 86.7 83 47.0
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 1.5e-15 86.3 86 48.8
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 2.0e-15 85.9 109 42.2
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 2.6e-15 85.5 97 50.5
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 2.6e-15 85.5 89 46.1
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 3.4e-15 85.1 80 53.8
Nn1g01375 Nelumbo nucifera HOM05D005649 ORTHO05D006837 4.5e-15 84.7 100 49.0
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 1.0e-14 83.6 89 47.2
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 1.0e-14 83.6 93 43.0
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 1.3e-14 83.2 99 46.5
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.3e-14 83.2 89 42.7
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 2.2e-14 82.4 90 43.3
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 2.2e-14 82.4 90 45.6
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 2.9e-14 82.0 80 45.0
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 2.9e-14 82.0 83 42.2
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 2.9e-14 82.0 69 47.8
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 2.9e-14 82.0 92 43.5
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 5.0e-14 81.3 99 45.5
HPP92_025369 Vanilla planifolia HOM05D005649 ORTHO05D006837 6.5e-14 80.9 75 53.3
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.4e-13 79.7 83 44.6
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 2.5e-13 79.0 87 40.2
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 2.5e-13 79.0 86 44.2
HPP92_025495 Vanilla planifolia HOM05D005649 ORTHO05D006837 2.5e-13 79.0 100 49.0
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 4.2e-13 78.2 90 40.0
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 4.2e-13 78.2 90 40.0
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 4.2e-13 78.2 53 62.3
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 9.4e-13 77.0 90 38.9
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 9.4e-13 77.0 90 38.9
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 1.2e-12 76.6 98 43.9
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 2.1e-12 75.9 88 46.6
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 3.3e-10 68.6 84 38.1
Zm00001eb198610 Zea mays HOM05D005649 ORTHO05D006837 4.3e-10 68.2 61 45.9
TAR636G3290 Trochodendron aralioides HOM05D000087 ORTHO05D000439 3.7e-09 65.1 80 40.0
SEGI_28530 Sequoiadendron giganteum HOM05D005649 ORTHO05D006837 1.1e-08 63.5 78 34.6
Aa31LG2G14360 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.2e-07 60.1 79 34.2


User provided reference genes

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