Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G167300 Theobroma cacao HOM05D006286 ORTHO05D007741 1.2e-135 486.5 244 100.0
Duzib084G1364 Durio zibethinus HOM05D006286 ORTHO05D007741 1.1e-117 426.8 244 88.1
Gohir.A09G179500 Gossypium hirsutum HOM05D006286 ORTHO05D007741 1.6e-111 406.4 234 86.3
Manes.14G030600 Manihot esculenta HOM05D006286 ORTHO05D007741 7.8e-111 404.1 244 81.1
Gorai.006G196900 Gossypium raimondii HOM05D006286 ORTHO05D007741 1.1e-109 400.2 234 84.2
Haze_13788 Corylus avellana HOM05D006286 ORTHO05D007741 7.3e-109 397.5 239 82.0
Gorai.013G064300 Gossypium raimondii HOM05D006286 ORTHO05D007741 6.2e-108 394.4 247 80.6
Cfa008258 Carpinus fangiana HOM05D006286 ORTHO05D007741 8.1e-108 394.0 239 81.6
Gohir.D13G056900 Gossypium hirsutum HOM05D006286 ORTHO05D007741 1.1e-107 393.7 247 80.6
RcHm_v2.0_Chr1g0376301 Rosa chinensis HOM05D006286 ORTHO05D007741 2.4e-107 392.5 244 79.5
CiPaw.03G100700 Carya illinoinensis HOM05D006286 ORTHO05D007741 4.0e-107 391.7 238 80.7
FAN10G3629 Fragaria x ananassa HOM05D006286 ORTHO05D007741 4.0e-107 391.7 244 80.3
FAN06G1618 Fragaria x ananassa HOM05D006286 ORTHO05D007741 6.9e-107 391.0 244 79.9
QL09p015278 Quercus lobata HOM05D006286 ORTHO05D007741 9.0e-107 390.6 246 78.9
Atru.chr1.554 Acer truncatum HOM05D006286 ORTHO05D007741 1.2e-106 390.2 244 79.5
TWI39G0272 Tripterygium wilfordii HOM05D006286 ORTHO05D007741 2.0e-106 389.4 244 79.9
FvH4_7g28750 Fragaria vesca HOM05D006286 ORTHO05D007741 3.4e-106 388.7 244 79.5
Gohir.A13G064700 Gossypium hirsutum HOM05D006286 ORTHO05D007741 5.8e-106 387.9 247 80.2
FAN01G0056 Fragaria x ananassa HOM05D006286 ORTHO05D007741 7.6e-106 387.5 244 79.9
Potri.015G135300 Populus trichocarpa HOM05D006286 ORTHO05D007741 2.9e-105 385.6 245 78.0
Cpa.g.sc4.205 Carica papaya HOM05D006286 ORTHO05D007741 4.9e-105 384.8 239 80.8
Sabra15G0147300 Salix brachista HOM05D006286 ORTHO05D007741 4.9e-105 384.8 245 78.4
GSVIVG01018444001 Vitis vinifera HOM05D006286 ORTHO05D007741 8.4e-105 384.0 244 79.1
Ciclev10005723m.g Citrus clementina HOM05D006286 ORTHO05D007741 1.9e-104 382.9 242 77.7
Prupe.2G287700 Prunus persica HOM05D006286 ORTHO05D007741 2.4e-104 382.5 244 78.7
FAN06G4550 Fragaria x ananassa HOM05D006286 ORTHO05D007741 3.2e-104 382.1 244 78.7
FAN03G0223 Fragaria x ananassa HOM05D006286 ORTHO05D007741 5.4e-104 381.3 248 77.8
FAN03G0937 Fragaria x ananassa HOM05D006286 ORTHO05D007741 7.1e-104 380.9 248 77.8
ClCG05G007720 Citrullus lanatus HOM05D006286 ORTHO05D007741 2.1e-103 379.4 244 76.6
Rhsim03G0175100 Rhododendron simsii HOM05D006286 ORTHO05D007741 4.6e-103 378.3 237 79.7
Eucgr.A02845 Eucalyptus grandis HOM05D006286 ORTHO05D007741 6.0e-103 377.9 250 76.8
arahy.Tifrunner.gnm1.ann1.MQ4KH5 Arachis hypogaea HOM05D006286 ORTHO05D007741 2.3e-102 375.9 240 76.7
CSS0046699 Camellia sinensis var. sinensis HOM05D006286 ORTHO05D007741 6.7e-102 374.4 237 78.1
MELO3C006861.2 Cucumis melo HOM05D006286 ORTHO05D007741 8.7e-102 374.0 245 75.1
CsaV3_3G016660 Cucumis sativus L. HOM05D006286 ORTHO05D007741 1.1e-101 373.6 245 75.5
Lj5g0022226 Lotus japonicus HOM05D006286 ORTHO05D007741 1.1e-101 373.6 244 76.2
MD01G1193900 Malus domestica HOM05D006286 ORTHO05D007741 1.9e-101 372.9 245 77.6
CANSAT25G1059 Cannabis sativa HOM05D006286 ORTHO05D007741 1.3e-100 370.2 242 76.0
Glyma.10G240400 Glycine max HOM05D006286 ORTHO05D007741 3.7e-100 368.6 247 75.3
Sed0023063 Sechium edule HOM05D006286 ORTHO05D007741 4.8e-100 368.2 244 75.0
Phvul.007G065700 Phaseolus vulgaris HOM05D006286 ORTHO05D007741 1.4e-99 366.7 241 76.8
Cc02_g03560 Coffea canephora HOM05D006286 ORTHO05D007741 2.4e-99 365.9 237 75.5
Nn1g01303 Nelumbo nucifera HOM05D006286 ORTHO05D007741 5.3e-99 364.8 230 77.8
TAR629G0337 Trochodendron aralioides HOM05D006286 ORTHO05D007741 9.9e-98 360.5 230 77.0
Sopen03g002810 Solanum pennellii HOM05D006286 ORTHO05D007741 2.9e-97 359.0 237 74.3
Actinidia25052 Actinidia chinensis HOM05D006286 ORTHO05D007741 4.9e-97 358.2 235 77.4
Lalb_Chr06g0160901 Lupinus albus HOM05D006286 ORTHO05D007741 6.4e-97 357.8 237 75.1
Solyc03g006820.3 Solanum lycopersicum HOM05D006286 ORTHO05D007741 6.4e-97 357.8 237 73.8
Nitab4.5_0004911g0020 Nicotiana tabacum HOM05D006286 ORTHO05D007741 8.4e-97 357.5 234 74.4
CAN.G1097.8 Capsicum annuum HOM05D006286 ORTHO05D007741 1.1e-96 357.1 240 74.6
Peaxi162Scf00192g00519 Petunia axillaris HOM05D006286 ORTHO05D007741 1.2e-95 353.6 238 75.2
TPR.G17410 Trifolium pratense HOM05D006286 ORTHO05D007741 1.2e-95 353.6 247 72.5
PGSC0003DMG400024248 Solanum tuberosum HOM05D006286 ORTHO05D007741 2.7e-95 352.4 238 72.3
Oeu047963.2 Olea europaea HOM05D006286 ORTHO05D007741 3.5e-95 352.1 241 73.0
HanXRQChr14g0461801 Helianthus annuus HOM05D006286 ORTHO05D007741 1.8e-94 349.7 239 72.4
Ca_10810_v3 Cicer arietinum L. HOM05D006286 ORTHO05D007741 3.0e-94 349.0 247 71.7
PSO782G2014 Papaver somniferum HOM05D006286 ORTHO05D007741 3.0e-94 349.0 235 73.2
Lsat_1_v5_gn_2_130220 Lactuca sativa HOM05D006286 ORTHO05D007741 3.9e-94 348.6 243 71.2
Rhsim09G0195200 Rhododendron simsii HOM05D006286 ORTHO05D007741 6.7e-94 347.8 234 73.9
VMungo0720G2540 Vigna mungo HOM05D006286 ORTHO05D007741 1.1e-93 347.1 230 76.1
Ah.13g067810 Amaranthus hybridus HOM05D006286 ORTHO05D007741 1.9e-93 346.3 218 78.0
PSO478G4977 Papaver somniferum HOM05D006286 ORTHO05D007741 1.9e-93 346.3 239 72.0
Psat6g201680 Pisum sativum HOM05D006286 ORTHO05D007741 2.5e-93 345.9 237 73.0
DCAR_018141 Daucus carota HOM05D006286 ORTHO05D007741 5.6e-93 344.7 237 72.2
PSO782G5477 Papaver somniferum HOM05D006286 ORTHO05D007741 1.3e-92 343.6 239 71.5
Aqoxy7G00487 Aquilegia oxysepala HOM05D006286 ORTHO05D007741 6.2e-92 341.3 241 72.6
SGA_v2.0_scaffold113G31783 Striga asiatica HOM05D006286 ORTHO05D007741 1.1e-91 340.5 238 72.3
EL10Ac3g05740 Beta vulgaris HOM05D006286 ORTHO05D007741 1.8e-91 339.7 218 75.7
THA.LOC104825086 Tarenaya hassleriana HOM05D006286 ORTHO05D007741 1.8e-91 339.7 243 71.6
Migut.F00396 Erythranthe guttata HOM05D006286 ORTHO05D007741 3.1e-91 339.0 239 72.0
vmacro09869 Vaccinium macrocarpon HOM05D006286 ORTHO05D007741 3.1e-91 339.0 233 73.8
Actinidia14215 Actinidia chinensis HOM05D006286 ORTHO05D007741 1.2e-90 337.0 248 70.6
AUR62021266 Chenopodium quinoa HOM05D006286 ORTHO05D007741 1.5e-90 336.7 218 76.1
Sc13g0008250 Simmondsia chinensis HOM05D006286 ORTHO05D007741 1.5e-90 336.7 234 70.9
Aa31sc908G10 Aethionema arabicum HOM05D006286 ORTHO05D007741 1.0e-89 334.0 240 71.7
Dinv28504 Davidia involucrata HOM05D006286 ORTHO05D007741 4.9e-89 331.6 231 72.3
Thhalv10014484m.g Eutrema salsugineum HOM05D006286 ORTHO05D007741 8.4e-89 330.9 241 70.5
ECA238G1566 Erigeron canadensis HOM05D006286 ORTHO05D007741 7.1e-88 327.8 236 68.6
COL.COLO4_14231 Corchorus olitorius HOM05D006286 ORTHO05D007741 9.3e-88 327.4 188 85.1
Carub.0008s1192 Capsella rubella HOM05D006286 ORTHO05D007741 3.5e-87 325.5 220 74.5
MSTRG.8433 Avicennia marina HOM05D006286 ORTHO05D007741 4.6e-87 325.1 209 75.6
Lj8A31T63 Lonicera japonica HOM05D006286 ORTHO05D007741 1.0e-86 323.9 199 78.9
Nitab4.5_0000832g0010 Nicotiana tabacum HOM05D006286 ORTHO05D007741 1.3e-86 323.6 195 80.0
Sp6g14140 Schrenkiella parvula HOM05D006286 ORTHO05D007741 2.3e-86 322.8 229 71.6
arahy.Tifrunner.gnm1.ann1.TWGE9F Arachis hypogaea HOM05D006286 ORTHO05D007741 3.9e-86 322.0 210 75.2
Hund04686 Selenicereus undatus HOM05D006286 ORTHO05D007741 2.5e-85 319.3 233 70.0
AL8G26180 Arabidopsis lyrata HOM05D006286 ORTHO05D007741 7.4e-85 317.8 220 73.2
ATR0757G128 Amborella trichopoda HOM05D006286 ORTHO05D007741 1.6e-84 316.6 230 64.8
AT5G51880 Arabidopsis thaliana HOM05D006286 ORTHO05D007741 1.6e-84 316.6 220 72.7
BcaC04g20627 Brassica carinata HOM05D006286 ORTHO05D007741 1.6e-84 316.6 233 69.1
C09p41380 Brassica napus HOM05D006286 ORTHO05D007741 1.6e-84 316.6 236 68.2
BolC9t57014H Brassica oleracea HOM05D006286 ORTHO05D007741 1.6e-84 316.6 236 68.2
A10p09720 Brassica napus HOM05D006286 ORTHO05D007741 2.8e-84 315.8 236 67.8
BraA10t43052Z Brassica rapa HOM05D006286 ORTHO05D007741 2.8e-84 315.8 236 67.8
AUR62016058 Chenopodium quinoa HOM05D006286 ORTHO05D007741 2.8e-84 315.8 195 79.0
PGR042G3452 Punica granatum HOM05D006286 ORTHO05D007741 1.8e-83 313.2 195 78.5
BcaB08g35541 Brassica carinata HOM05D006286 ORTHO05D007741 3.1e-83 312.4 233 67.4
unitig_37.g11947 Utricularia gibba HOM05D006286 ORTHO05D007741 1.2e-82 310.5 232 67.7
vmacro06741 Vaccinium macrocarpon HOM05D006286 ORTHO05D007741 5.0e-81 305.1 224 69.2
Os03g0119000 Oryza sativa ssp. japonica HOM05D006286 ORTHO05D007741 3.6e-79 298.9 218 67.9
HPP92_003528 Vanilla planifolia HOM05D006286 ORTHO05D007741 1.1e-77 293.9 243 60.9
SalBow2G2245 Salvia bowleyana HOM05D006286 ORTHO05D007741 8.2e-76 287.7 240 62.9
CARHR264790 Cardamine hirsuta HOM05D006286 ORTHO05D007741 1.1e-75 287.3 199 73.4
CDE12G0688 Ceratophyllum demersum HOM05D006286 ORTHO05D007741 1.1e-75 287.3 214 65.4
CiPaw.15G075500 Carya illinoinensis HOM05D006286 ORTHO05D007741 5.9e-74 281.6 211 67.3
Potri.012G133100 Populus trichocarpa HOM05D006286 ORTHO05D007741 1.1e-72 277.3 267 59.2
Glyma.20G154300 Glycine max HOM05D006286 ORTHO05D007741 7.2e-72 274.6 205 70.7
MBI12_g36686_MAGBIO Magnolia biondii HOM05D006286 ORTHO05D007741 1.1e-69 267.3 198 67.7
Gohir.D09G174800 Gossypium hirsutum HOM05D006286 ORTHO05D007741 3.4e-66 255.8 142 88.0
Mapoly0028s0137 Marchantia polymorpha HOM05D006286 ORTHO05D007741 5.9e-66 255.0 239 54.4
SMO139G0115 Selaginella moellendorffii HOM05D006286 ORTHO05D007741 6.5e-65 251.5 220 54.5
AagrBONN_evm.TU.Sc2ySwM_368.2699 Anthoceros agrestis HOM05D006286 ORTHO05D007741 1.5e-61 240.4 223 56.1
SEGI_34239 Sequoiadendron giganteum HOM05D006286 ORTHO05D007741 5.9e-58 228.4 176 62.5
Pp3c22_4190 Physcomitrium patens HOM05D006286 ORTHO05D007741 2.9e-57 226.1 243 50.6
Medtr1g101840 Medicago truncatula HOM05D006286 ORTHO05D007741 2.1e-55 219.9 141 77.3
Zm00001eb001360 Zea mays HOM05D006286 ORTHO05D007741 8.0e-55 218.0 193 58.5
Actinidia03097 Actinidia chinensis HOM05D006286 ORTHO05D007741 1.6e-50 203.8 128 76.6
SHI13825 Sapria himalayana HOM05D000350 ORTHO05D000228 4.1e-35 152.5 184 47.3
Actinidia13543 Actinidia chinensis HOM05D006286 ORTHO05D007741 2.6e-29 133.3 92 72.8
MCO04G355 Micromonas commoda HOM05D006286 ORTHO05D007741 1.4e-27 127.5 208 38.9
Cfa025685 Carpinus fangiana HOM05D006286 ORTHO05D007741 2.8e-23 113.2 251 32.3
Cre14.g619900 Chlamydomonas reinhardtii HOM05D006286 ORTHO05D007741 3.1e-22 109.8 218 33.9
PRCOL_00006636 Prasinoderma coloniale HOM05D006286 ORTHO05D007741 7.5e-21 105.1 184 38.6
RcHm_v2.0_Chr1g0376261 Rosa chinensis HOM05D006286 ORTHO05D007741 2.1e-15 87.0 49 81.6
FvH4_2g14060 Fragaria vesca HOM05D006286 ORTHO05D007741 1.4e-14 84.3 60 68.3
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 3.4e-13 79.7 66 59.1
SEGI_15131 Sequoiadendron giganteum HOM05D006286 ORTHO05D007741 2.5e-08 63.5 34 79.4
MCO03G036 Micromonas commoda HOM05D037152 ORTHO05D034124 4.3e-08 62.8 251 27.9


User provided reference genes

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