Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 4.5e-133 478.0 257 100.0
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 5.3e-118 427.9 257 90.3
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 1.0e-113 413.7 257 87.9
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.2e-108 396.0 257 84.8
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 4.7e-106 388.3 257 82.9
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 8.0e-106 387.5 257 82.5
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.3e-105 386.0 257 82.5
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 6.8e-105 384.4 257 82.1
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 7.5e-104 380.9 257 82.1
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 5.7e-96 354.8 257 76.3
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 7.0e-94 347.8 255 74.5
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 1.3e-92 343.6 254 74.4
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 3.9e-92 342.0 255 74.1
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 3.3e-91 339.0 257 74.3
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 3.1e-89 332.4 257 71.6
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 2.0e-88 329.7 257 70.8
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 5.8e-88 328.2 257 70.4
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 5.8e-88 328.2 257 70.8
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 1.9e-86 323.2 253 71.9
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 2.4e-86 322.8 259 71.8
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 9.2e-86 320.9 254 70.9
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.2e-85 320.5 255 71.8
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 2.7e-85 319.3 257 69.3
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.7e-85 319.3 255 70.2
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 1.3e-84 317.0 257 68.9
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 1.7e-84 316.6 257 72.0
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 3.0e-84 315.8 259 69.1
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 3.9e-84 315.5 261 70.1
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 3.9e-84 315.5 256 70.7
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 6.6e-84 314.7 258 70.2
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 6.6e-84 314.7 253 71.1
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 1.5e-83 313.5 256 69.1
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 1.5e-83 313.5 254 70.5
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 4.3e-83 312.0 257 68.1
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 9.5e-83 310.8 255 68.6
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 2.1e-82 309.7 255 69.4
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 4.7e-82 308.5 254 69.3
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 2.3e-81 306.2 249 69.1
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 8.9e-81 304.3 254 68.9
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 1.2e-80 303.9 257 67.7
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 1.5e-80 303.5 257 68.9
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 1.5e-80 303.5 268 65.7
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 2.6e-80 302.8 249 68.7
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 3.4e-80 302.4 258 66.7
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 3.4e-80 302.4 288 61.1
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 3.4e-80 302.4 251 68.5
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 7.5e-80 301.2 257 66.9
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 9.8e-80 300.8 279 65.2
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 1.3e-79 300.4 257 68.5
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.7e-79 300.1 255 65.9
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 3.7e-79 298.9 255 65.5
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 8.3e-79 297.7 258 66.7
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 1.1e-78 297.4 261 67.0
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 1.9e-78 296.6 255 66.3
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 4.1e-78 295.4 254 68.5
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 9.2e-78 294.3 255 65.5
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 9.2e-78 294.3 254 66.1
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 4.6e-77 292.0 257 66.1
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 6.0e-77 291.6 249 65.5
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 6.0e-77 291.6 249 66.7
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 7.8e-77 291.2 257 65.8
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 2.3e-76 289.7 255 64.3
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 5.1e-76 288.5 255 64.3
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 6.6e-76 288.1 248 66.1
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 1.1e-75 287.3 248 67.7
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 1.9e-75 286.6 253 66.8
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 4.7e-74 282.0 257 64.6
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 4.7e-74 282.0 250 64.8
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 6.2e-74 281.6 257 64.6
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 8.1e-74 281.2 250 64.0
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 1.1e-73 280.8 227 72.2
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 1.4e-73 280.4 257 64.2
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 1.4e-73 280.4 254 65.0
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 2.3e-73 279.6 262 64.1
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 3.1e-73 279.3 257 64.2
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 3.1e-73 279.3 251 64.9
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 6.8e-73 278.1 259 62.5
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 8.9e-73 277.7 258 65.5
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 8.9e-73 277.7 252 65.9
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 5.8e-72 275.0 251 64.9
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 5.8e-72 275.0 230 68.7
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 7.6e-72 274.6 258 61.6
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 1.7e-71 273.5 255 63.5
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 2.2e-71 273.1 263 64.3
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 3.2e-70 269.2 257 63.0
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 7.1e-70 268.1 251 63.3
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 7.1e-70 268.1 265 63.0
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 1.2e-69 267.3 250 61.2
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.7e-69 266.2 158 89.2
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 2.7e-69 266.2 262 61.1
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 7.8e-69 264.6 257 61.1
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 3.9e-68 262.3 299 56.9
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 1.2e-66 257.3 255 61.2
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 1.6e-66 256.9 259 61.8
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 2.1e-66 256.5 254 60.2
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 2.8e-66 256.1 224 66.1
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 3.6e-66 255.8 157 88.5
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 8.1e-66 254.6 260 61.5
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 8.1e-66 254.6 307 52.1
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 1.4e-65 253.8 260 60.4
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 6.9e-65 251.5 258 60.5
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 2.6e-64 249.6 378 45.5
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 1.7e-63 246.9 252 59.1
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 2.9e-63 246.1 258 59.3
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 8.4e-63 244.6 258 58.5
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 1.9e-62 243.4 152 84.9
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 4.2e-62 242.3 262 58.8
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 5.4e-62 241.9 260 59.2
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 3.5e-61 239.2 257 58.0
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 2.5e-59 233.0 255 55.3
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 9.6e-59 231.1 255 54.9
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 4.0e-57 225.7 274 52.2
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 5.3e-57 225.3 192 68.8
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 6.9e-57 224.9 222 61.7
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 6.0e-53 211.8 257 53.3
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 2.0e-48 196.8 284 46.1
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 5.8e-48 195.3 221 56.1
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 2.4e-46 189.9 176 62.5
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 2.7e-45 186.4 251 47.0
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.3e-44 184.1 196 57.7
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 1.8e-44 183.7 275 48.0
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 2.5e-43 179.9 207 56.5
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 4.3e-43 179.1 257 47.5
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 6.2e-42 175.3 182 58.8
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 4.2e-38 162.5 281 42.0
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 2.7e-37 159.8 99 83.8
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 1.3e-36 157.5 182 53.3
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 6.7e-36 155.2 135 63.7
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 4.3e-35 152.5 96 81.2
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 6.3e-34 148.7 156 59.6
Duzib205G1338 Durio zibethinus HOM05D005135 ORTHO05D005810 8.2e-34 148.3 132 65.2
Duzib205G1376 Durio zibethinus HOM05D005135 ORTHO05D005810 2.7e-29 133.3 99 73.7
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 7.9e-21 105.1 123 48.0
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 3.0e-20 103.2 100 62.0
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 3.9e-20 102.8 230 40.4
SHI48584 Sapria himalayana HOM05D005135 ORTHO05D005810 8.8e-20 101.7 153 46.4
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 1.7e-18 97.4 67 76.1
Cpa.g.sc4.198 Carica papaya HOM05D005135 ORTHO05D005810 6.3e-18 95.5 91 57.1
Potri.012G132766 Populus trichocarpa HOM05D005135 ORTHO05D005810 4.1e-17 92.8 60 80.0
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 2.2e-15 87.0 53 86.8
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 2.2e-15 87.0 139 46.0
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 1.3e-10 71.2 63 58.7
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 2.8e-10 70.1 169 34.9
CDE04G1613 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 4.8e-10 69.3 40 82.5
PRCOL_00003096 Prasinoderma coloniale HOM05D005135 ORTHO05D005810 8.5e-07 58.5 133 36.8
C09p41330 Brassica napus HOM05D005135 ORTHO05D005810 1.9e-06 57.4 187 34.8
BolC9t57008H Brassica oleracea HOM05D005135 ORTHO05D005810 1.9e-06 57.4 187 34.8
Glyma.09G148800 Glycine max HOM05D005135 ORTHO05D005810 3.2e-06 56.6 94 43.6


User provided reference genes

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