Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 0.0e+00 1940.6 963 100.0
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 0.0e+00 1708.3 1009 86.3
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 0.0e+00 1691.4 997 86.8
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 0.0e+00 1444.9 987 75.3
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 0.0e+00 1444.5 936 77.4
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 0.0e+00 1435.2 997 73.8
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 0.0e+00 1430.6 1008 74.7
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 0.0e+00 1429.1 972 76.4
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 0.0e+00 1423.3 969 76.5
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 0.0e+00 1368.2 932 74.1
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 0.0e+00 1367.1 997 72.0
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 0.0e+00 1358.6 1006 70.9
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 0.0e+00 1355.5 997 70.3
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 0.0e+00 1345.9 1011 71.5
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 0.0e+00 1328.2 922 73.9
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 0.0e+00 1325.8 994 70.1
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 0.0e+00 1319.7 999 69.3
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 0.0e+00 1317.8 1002 70.1
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 0.0e+00 1315.8 996 70.5
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 0.0e+00 1312.0 921 71.8
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 0.0e+00 1308.9 993 69.5
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 0.0e+00 1308.5 951 72.6
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 0.0e+00 1307.7 980 69.5
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 0.0e+00 1293.9 1010 68.5
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 0.0e+00 1285.8 949 69.9
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 0.0e+00 1285.4 949 69.9
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 0.0e+00 1277.7 1019 68.1
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 0.0e+00 1268.1 1000 67.4
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 0.0e+00 1265.0 994 67.4
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1259.6 999 66.2
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 0.0e+00 1259.6 989 66.7
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 0.0e+00 1256.9 968 67.4
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1248.0 987 66.2
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 0.0e+00 1238.8 902 72.0
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 0.0e+00 1238.8 993 64.9
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 0.0e+00 1234.2 902 71.7
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 0.0e+00 1226.8 935 67.5
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 0.0e+00 1226.1 1026 65.3
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 0.0e+00 1224.9 842 74.6
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1221.8 1013 66.2
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 0.0e+00 1216.4 975 67.3
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1214.5 1006 65.1
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1212.2 1006 65.0
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 0.0e+00 1211.1 1003 65.2
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1205.7 1007 64.8
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 0.0e+00 1201.0 1008 65.0
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1195.6 1003 64.6
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 0.0e+00 1189.9 680 85.6
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 0.0e+00 1186.8 931 66.5
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 0.0e+00 1171.0 924 66.1
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 0.0e+00 1163.7 830 72.0
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 0.0e+00 1144.4 949 64.1
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 0.0e+00 1141.7 998 62.4
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 0.0e+00 1130.2 1009 60.8
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 0.0e+00 1120.9 996 62.9
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1119.0 1013 61.6
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 0.0e+00 1118.2 1026 59.4
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 0.0e+00 1116.3 961 62.6
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 0.0e+00 1113.6 1014 61.1
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 0.0e+00 1109.0 970 60.8
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 0.0e+00 1091.3 934 61.3
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 0.0e+00 1083.6 1009 57.4
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 0.0e+00 1075.1 821 65.3
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 6.6e-312 1073.5 955 61.5
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 1.3e-311 1072.8 972 60.3
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 1.7e-310 1069.3 961 59.9
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 1.0e-307 1060.1 964 58.9
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 3.3e-306 1055.0 977 59.8
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 2.2e-305 1052.4 961 60.9
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 3.7e-305 1051.6 981 58.3
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 2.0e-303 1045.8 959 59.5
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 2.7e-300 1035.4 943 59.4
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 3.7e-297 1025.0 1025 54.8
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 1.3e-289 1000.0 1014 54.4
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 9.8e-282 973.8 869 58.9
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 2.3e-275 952.6 832 59.5
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 4.4e-274 948.3 1024 52.8
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 8.3e-273 944.1 1025 53.1
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 3.2e-272 942.2 526 85.6
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 9.2e-272 940.6 1023 52.7
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 2.7e-271 939.1 1018 52.7
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 2.7e-271 939.1 1018 52.7
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 3.9e-270 935.3 1024 52.0
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 6.6e-270 934.5 1018 52.4
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 2.1e-268 929.5 754 63.5
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 1.3e-265 920.2 938 54.8
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 1.7e-265 919.8 1030 51.9
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 4.9e-265 918.3 1019 52.2
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 4.9e-265 918.3 1019 52.2
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 7.8e-263 911.0 1029 51.0
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 5.8e-258 894.8 1021 50.7
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 2.9e-257 892.5 1001 50.4
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 1.4e-256 890.2 1019 50.5
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 2.4e-256 889.4 1018 50.7
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 1.7e-254 883.2 1019 50.2
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 8.1e-252 874.4 809 55.3
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 5.8e-250 868.2 935 53.2
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 9.9e-242 840.9 753 59.1
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 5.4e-240 835.1 1019 48.6
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 5.1e-238 828.6 530 74.3
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 1.1e-237 827.4 537 73.9
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 2.8e-236 822.8 1001 48.7
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 2.7e-215 753.1 672 56.1
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 3.9e-206 722.6 622 59.6
Atru.chr1.580 Acer truncatum HOM05D005963 ORTHO05D006869 2.0e-170 604.0 379 78.1
C09p41240 Brassica napus HOM05D005963 ORTHO05D006869 2.3e-158 563.9 711 48.9
Glyma.16G201100 Glycine max HOM05D005963 ORTHO05D006869 9.5e-152 542.0 450 67.6
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 1.7e-148 531.2 470 55.3
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 3.9e-129 466.8 407 56.8
Atru.chr1.581 Acer truncatum HOM05D005963 ORTHO05D006869 3.4e-117 427.2 404 64.9
ATR0661G452 Amborella trichopoda HOM05D005963 ORTHO05D006869 1.1e-94 352.4 498 44.6
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 2.2e-79 301.6 311 51.1
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 5.2e-65 253.8 727 29.6
MBI05_g12587_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 2.4e-54 218.4 344 37.2
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 2.7e-53 214.9 266 49.2
MBI05_g12586_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 1.9e-43 182.2 190 52.1
Pp3c26_6160 Physcomitrium patens HOM05D005963 ORTHO05D006869 2.1e-42 178.7 375 33.1
Pp3c26_6250 Physcomitrium patens HOM05D005963 ORTHO05D006869 2.1e-42 178.7 375 33.1
Pp3c2_90 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.0e-41 176.4 375 32.5
Pp3c18_1570 Physcomitrium patens HOM05D005963 ORTHO05D006869 2.3e-41 175.3 375 33.1
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 4.4e-32 144.4 382 28.8
SMO358G0565 Selaginella moellendorffii HOM05D001046 ORTHO05D007174 3.3e-27 128.3 396 29.3
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 3.6e-26 124.8 316 28.2
SMO195G0003 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 4.0e-17 94.7 307 28.3
SMO116G0123 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.5e-16 92.8 348 27.6
CDE08G0941 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 4.4e-16 91.3 107 50.5
MBI05_g12588_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 1.1e-14 86.7 66 65.2
SMO268G0015 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.0e-12 80.1 366 23.2
Dinv24731 Davidia involucrata HOM05D005963 ORTHO05D006869 6.2e-10 70.9 63 69.8
Cre02.g095117 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 9.0e-09 67.0 352 23.3
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 5.8e-08 64.3 168 31.0
Cre08.g380452 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 1.3e-07 63.2 296 22.3
Cre01.g041800 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 2.9e-07 62.0 297 21.5
Pp3c12_22800 Physcomitrium patens HOM05D002537 ORTHO05D002751 2.9e-07 62.0 131 29.8
SMO351G0173 Selaginella moellendorffii HOM05D002537 ORTHO05D002751 2.9e-07 62.0 140 30.0
AagrBONN_evm.TU.Sc2ySwM_117.2839 Anthoceros agrestis HOM05D002537 ORTHO05D006869 3.8e-07 61.6 220 28.2
Haze_06001 Corylus avellana HOM05D003725 ORTHO05D004294 1.9e-06 59.3 186 26.3
Lsat_1_v5_gn_5_10240 Lactuca sativa HOM05D002537 ORTHO05D002751 5.4e-06 57.8 160 28.1
Pp3c4_270 Physcomitrium patens HOM05D002537 ORTHO05D002751 5.4e-06 57.8 201 27.4
Cfa000740 Carpinus fangiana HOM05D003725 ORTHO05D004294 9.3e-06 57.0 185 24.9
Zm00001eb242030 Zea mays HOM05D002537 ORTHO05D002751 9.3e-06 57.0 91 33.0


User provided reference genes

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