Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G163500 Theobroma cacao HOM05D007196 ORTHO05D009100 1.2e-61 239.6 119 100.0
COL.COLO4_14199 Corchorus olitorius HOM05D007196 ORTHO05D009100 3.4e-51 204.9 119 85.7
Duzib205G1842 Durio zibethinus HOM05D007196 ORTHO05D009100 2.4e-49 198.7 119 84.0
Duzib068G1365 Durio zibethinus HOM05D007196 ORTHO05D009100 7.9e-48 193.7 119 81.5
Duzib205G0862 Durio zibethinus HOM05D007196 ORTHO05D009100 7.9e-48 193.7 119 82.4
Gohir.D11G007600 Gossypium hirsutum HOM05D007196 ORTHO05D009100 6.0e-40 167.5 119 73.1
Gorai.007G009100 Gossypium raimondii HOM05D007196 ORTHO05D009100 1.3e-39 166.4 119 73.1
Gohir.A11G008400 Gossypium hirsutum HOM05D007196 ORTHO05D009100 1.1e-38 163.3 119 71.4
CiPaw.03G098100 Carya illinoinensis HOM05D007196 ORTHO05D009100 1.1e-36 156.8 125 67.2
Cfa008239 Carpinus fangiana HOM05D007196 ORTHO05D009100 5.3e-36 154.5 120 70.0
Dinv08000 Davidia involucrata HOM05D007196 ORTHO05D009100 1.5e-35 152.9 122 67.2
Ciclev10006560m.g Citrus clementina HOM05D007196 ORTHO05D009100 1.0e-34 150.2 90 86.7
vmacro06759 Vaccinium macrocarpon HOM05D007196 ORTHO05D009100 1.7e-34 149.4 121 73.6
Potri.012G130600 Populus trichocarpa HOM05D007196 ORTHO05D009100 1.1e-33 146.7 116 69.0
Sabra12G0098300 Salix brachista HOM05D007196 ORTHO05D009100 1.1e-33 146.7 116 67.2
TAR375G0687 Trochodendron aralioides HOM05D007196 ORTHO05D009100 1.1e-33 146.7 120 70.0
Rhsim03G0172900 Rhododendron simsii HOM05D007196 ORTHO05D009100 1.9e-33 146.0 120 71.7
Potri.015G132500 Populus trichocarpa HOM05D007196 ORTHO05D009100 2.5e-33 145.6 95 76.8
Eucgr.K00137 Eucalyptus grandis HOM05D007196 ORTHO05D009100 3.2e-33 145.2 98 75.5
RcHm_v2.0_Chr1g0375291 Rosa chinensis HOM05D007196 ORTHO05D009100 3.2e-33 145.2 85 85.9
Glyma.09G152100 Glycine max HOM05D007196 ORTHO05D009100 5.5e-33 144.4 119 66.4
Atru.chr1.612 Acer truncatum HOM05D007196 ORTHO05D009100 7.1e-33 144.1 120 66.7
TWI14G0139 Tripterygium wilfordii HOM05D007196 ORTHO05D009100 7.1e-33 144.1 117 65.8
Actinidia13526 Actinidia chinensis HOM05D007196 ORTHO05D009100 9.3e-33 143.7 118 71.2
HanXRQChr07g0206311 Helianthus annuus HOM05D007196 ORTHO05D009100 9.3e-33 143.7 97 73.2
Manes.14G032200 Manihot esculenta HOM05D007196 ORTHO05D009100 9.3e-33 143.7 118 65.3
Cpa.g.sc3.256 Carica papaya HOM05D007196 ORTHO05D009100 1.6e-32 142.9 121 66.9
TWI23G0806 Tripterygium wilfordii HOM05D007196 ORTHO05D009100 2.7e-32 142.1 117 64.1
Lj2g0025497 Lotus japonicus HOM05D007196 ORTHO05D009100 3.5e-32 141.7 122 62.3
Prupe.2G283900 Prunus persica HOM05D007196 ORTHO05D009100 3.5e-32 141.7 73 91.8
FAN03G0205 Fragaria x ananassa HOM05D007196 ORTHO05D009100 6.0e-32 141.0 77 88.3
FAN10G3863 Fragaria x ananassa HOM05D007196 ORTHO05D009100 6.0e-32 141.0 95 76.8
Phvul.004G125800 Phaseolus vulgaris HOM05D007196 ORTHO05D009100 7.9e-32 140.6 122 62.3
FAN06G1802 Fragaria x ananassa HOM05D007196 ORTHO05D009100 1.0e-31 140.2 77 87.0
FAN06G4298 Fragaria x ananassa HOM05D007196 ORTHO05D009100 1.0e-31 140.2 77 87.0
Glyma.16G203100 Glycine max HOM05D007196 ORTHO05D009100 1.3e-31 139.8 121 65.3
Lalb_Chr19g0131261 Lupinus albus HOM05D007196 ORTHO05D009100 1.3e-31 139.8 81 82.7
MD01G1187500 Malus domestica HOM05D007196 ORTHO05D009100 1.8e-31 139.4 81 82.7
THA.LOC104811505 Tarenaya hassleriana HOM05D007196 ORTHO05D009100 1.8e-31 139.4 78 85.9
arahy.Tifrunner.gnm1.ann1.S0TT2Y Arachis hypogaea HOM05D007196 ORTHO05D009100 2.3e-31 139.0 91 78.0
ECA238G2893 Erigeron canadensis HOM05D007196 ORTHO05D009100 3.9e-31 138.3 103 70.9
Sed0001882 Sechium edule HOM05D007196 ORTHO05D009100 6.7e-31 137.5 75 89.3
FvH4_7g28320 Fragaria vesca HOM05D007196 ORTHO05D009100 8.7e-31 137.1 77 84.4
Cc02_g03760 Coffea canephora HOM05D007196 ORTHO05D009100 1.1e-30 136.7 91 74.7
Nitab4.5_0003984g0020 Nicotiana tabacum HOM05D007196 ORTHO05D009100 1.1e-30 136.7 93 76.3
AUR62016084 Chenopodium quinoa HOM05D007196 ORTHO05D009100 1.5e-30 136.3 78 87.2
CSS0025032 Camellia sinensis var. sinensis HOM05D007196 ORTHO05D009100 1.9e-30 136.0 119 65.5
QL12p039322 Quercus lobata HOM05D007196 ORTHO05D009100 1.9e-30 136.0 148 54.7
PGR142G2119 Punica granatum HOM05D007196 ORTHO05D009100 2.5e-30 135.6 81 85.2
PGSC0003DMG400031014 Solanum tuberosum HOM05D007196 ORTHO05D009100 2.5e-30 135.6 104 70.2
EL10Ac3g05770 Beta vulgaris HOM05D007196 ORTHO05D009100 3.3e-30 135.2 121 62.8
AUR62021293 Chenopodium quinoa HOM05D007196 ORTHO05D009100 3.3e-30 135.2 78 85.9
Carub.0008s1174 Capsella rubella HOM05D007196 ORTHO05D009100 7.4e-30 134.0 79 84.8
Migut.F00414 Erythranthe guttata HOM05D007196 ORTHO05D009100 7.4e-30 134.0 81 81.5
Peaxi162Scf00192g00828 Petunia axillaris HOM05D007196 ORTHO05D009100 7.4e-30 134.0 84 81.0
Solyc03g007030.3 Solanum lycopersicum HOM05D007196 ORTHO05D009100 7.4e-30 134.0 93 71.0
GSVIVG01018482001 Vitis vinifera HOM05D007196 ORTHO05D009100 7.4e-30 134.0 72 90.3
CAN.G1481.5 Capsicum annuum HOM05D007196 ORTHO05D009100 1.3e-29 133.3 117 63.2
AL8G25980 Arabidopsis lyrata HOM05D007196 ORTHO05D009100 1.6e-29 132.9 80 83.8
CARHR264580 Cardamine hirsuta HOM05D007196 ORTHO05D009100 1.6e-29 132.9 80 83.8
Thhalv10015074m.g Eutrema salsugineum HOM05D007196 ORTHO05D009100 1.6e-29 132.9 122 62.3
Hma1.2p1_0488F.1_g163760 Hydrangea macrophylla HOM05D007196 ORTHO05D009100 1.6e-29 132.9 125 62.4
Sp6g13940 Schrenkiella parvula HOM05D007196 ORTHO05D009100 1.6e-29 132.9 119 61.3
MELO3C005405.2 Cucumis melo HOM05D007196 ORTHO05D009100 2.1e-29 132.5 78 82.1
PSO478G0391 Papaver somniferum HOM05D007196 ORTHO05D009100 2.1e-29 132.5 75 85.3
AT5G51720 Arabidopsis thaliana HOM05D007196 ORTHO05D009100 2.8e-29 132.1 79 83.5
BcaC04g20641 Brassica carinata HOM05D007196 ORTHO05D009100 3.7e-29 131.7 121 62.8
C09p41140 Brassica napus HOM05D007196 ORTHO05D009100 3.7e-29 131.7 121 62.8
BolC9t56992H Brassica oleracea HOM05D007196 ORTHO05D009100 3.7e-29 131.7 121 62.8
Lsat_1_v5_gn_2_129760 Lactuca sativa HOM05D007196 ORTHO05D009100 4.8e-29 131.3 99 65.7
Sopen03g003020 Solanum pennellii HOM05D007196 ORTHO05D009100 6.2e-29 131.0 93 72.0
BcaB08g35520 Brassica carinata HOM05D007196 ORTHO05D009100 8.2e-29 130.6 87 77.0
A10p09580 Brassica napus HOM05D007196 ORTHO05D009100 8.2e-29 130.6 87 77.0
BraA10t43033Z Brassica rapa HOM05D007196 ORTHO05D009100 8.2e-29 130.6 87 77.0
CANSAT21G1841 Cannabis sativa HOM05D007196 ORTHO05D009100 8.2e-29 130.6 82 78.0
CsaV3_5G005490 Cucumis sativus L. HOM05D007196 ORTHO05D009100 8.2e-29 130.6 79 81.0
SalBow4G2038 Salvia bowleyana HOM05D007196 ORTHO05D009100 8.2e-29 130.6 89 71.9
SEGI_24908 Sequoiadendron giganteum HOM05D007196 ORTHO05D009100 1.4e-28 129.8 83 73.5
HPP92_007351 Vanilla planifolia HOM05D007196 ORTHO05D009100 1.4e-28 129.8 76 80.3
Aqoxy7G00560 Aquilegia oxysepala HOM05D007196 ORTHO05D009100 5.3e-28 127.9 118 61.0
unitig_52.g17755 Utricularia gibba HOM05D007196 ORTHO05D009100 5.3e-28 127.9 93 66.7
Psat1g109280 Pisum sativum HOM05D007196 ORTHO05D009100 6.9e-28 127.5 120 59.2
ClCG01G005210 Citrullus lanatus HOM05D007196 ORTHO05D009100 9.0e-28 127.1 75 80.0
Cc00_g08970 Coffea canephora HOM05D007196 ORTHO05D009100 9.0e-28 127.1 92 72.8
TPR.G27717 Trifolium pratense HOM05D007196 ORTHO05D009100 1.2e-27 126.7 83 72.3
MBI12_g21133_MAGBIO Magnolia biondii HOM05D007196 ORTHO05D009100 1.5e-27 126.3 117 61.5
Zm00001eb320190 Zea mays HOM05D007196 ORTHO05D009100 2.6e-27 125.6 78 74.4
DCAR_018131 Daucus carota HOM05D007196 ORTHO05D009100 3.4e-27 125.2 116 61.2
Os07g0467200 Oryza sativa ssp. japonica HOM05D007196 ORTHO05D009100 4.5e-27 124.8 81 75.3
Medtr0050s0180 Medicago truncatula HOM05D007196 ORTHO05D009100 1.3e-26 123.2 120 55.0
CDE02G2935 Ceratophyllum demersum HOM05D007196 ORTHO05D009100 6.5e-26 120.9 118 53.4
Mapoly0132s0038 Marchantia polymorpha HOM05D007196 ORTHO05D009100 6.5e-26 120.9 91 65.9
CDE11G1107 Ceratophyllum demersum HOM05D007196 ORTHO05D009100 1.1e-25 120.2 83 68.7
SMO367G0606 Selaginella moellendorffii HOM05D003621 ORTHO05D004259 1.1e-25 120.2 100 64.0
AagrBONN_evm.TU.Sc2ySwM_117.3845 Anthoceros agrestis HOM05D007196 ORTHO05D009100 3.2e-25 118.6 62 85.5
PSO782G2298 Papaver somniferum HOM05D007196 ORTHO05D009100 3.2e-25 118.6 79 74.7
Pp3c24_720 Physcomitrium patens HOM05D007196 ORTHO05D009100 6.1e-24 114.4 101 58.4
Pp3c23_14000 Physcomitrium patens HOM05D007196 ORTHO05D009100 1.8e-23 112.8 86 66.3
AUR62023670 Chenopodium quinoa HOM05D007196 ORTHO05D001134 3.3e-22 108.6 71 74.6
Cre01.g050550 Chlamydomonas reinhardtii HOM05D007196 ORTHO05D009100 2.2e-21 105.9 79 62.0
CBR_g49669 Chara braunii HOM05D007196 ORTHO05D009100 3.7e-21 105.1 85 62.4
PGSC0003DMG400019391 Solanum tuberosum HOM05D007196 ORTHO05D009100 8.2e-21 104.0 90 60.0
CAN.G1135.2 Capsicum annuum HOM05D007196 ORTHO05D009100 1.1e-20 103.6 124 54.0
Dinv28524 Davidia involucrata HOM05D007196 ORTHO05D009100 6.7e-15 84.3 94 57.4
Haze_13814 Corylus avellana HOM05D007196 ORTHO05D009100 8.8e-15 84.0 94 56.4
Haze_26518 Corylus avellana HOM05D007196 ORTHO05D009100 1.7e-13 79.7 105 39.0
FAN03G1444 Fragaria x ananassa HOM05D000077 ORTHO05D000981 1.1e-09 67.0 43 81.4
VMungo0464G1496 Vigna mungo HOM05D007196 ORTHO05D009100 5.5e-09 64.7 59 62.7
Nn4g26452 Nelumbo nucifera HOM05D007196 ORTHO05D009100 4.7e-08 61.6 40 80.0
Cc05_g04470 Coffea canephora HOM05D007196 ORTHO05D009100 6.1e-08 61.2 91 46.2
ATR0757G208 Amborella trichopoda HOM05D007196 ORTHO05D009100 1.1e-06 57.0 85 51.8


User provided reference genes

Program Settings