Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G163300 Theobroma cacao HOM05D006795 ORTHO05D008573 2.3e-133 478.8 221 100.0
COL.COLO4_14197 Corchorus olitorius HOM05D006795 ORTHO05D008573 8.1e-115 417.2 221 85.5
Duzib068G1417 Durio zibethinus HOM05D006795 ORTHO05D008573 1.1e-111 406.8 222 85.1
Gohir.A09G178600 Gossypium hirsutum HOM05D006795 ORTHO05D008573 7.9e-102 374.0 220 79.5
Gohir.D09G174200 Gossypium hirsutum HOM05D006795 ORTHO05D008573 1.0e-101 373.6 220 79.5
Dinv07998 Davidia involucrata HOM05D006795 ORTHO05D008573 1.6e-99 366.3 226 73.9
TWI39G0269 Tripterygium wilfordii HOM05D006795 ORTHO05D008573 1.1e-98 363.6 219 74.4
Potri.015G132300 Populus trichocarpa HOM05D006795 ORTHO05D008573 5.3e-98 361.3 220 74.1
Cpa.g.sc3.258 Carica papaya HOM05D006795 ORTHO05D008573 1.5e-97 359.8 221 76.0
Ciclev10005807m.g Citrus clementina HOM05D006795 ORTHO05D008573 2.0e-97 359.4 227 75.3
CAN.G1187.5 Capsicum annuum HOM05D006795 ORTHO05D008573 2.6e-97 359.0 223 72.2
CiPaw.03G097900 Carya illinoinensis HOM05D006795 ORTHO05D008573 1.0e-96 357.1 221 74.2
CSS0024840 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 2.2e-96 355.9 226 71.7
Manes.06G149000 Manihot esculenta HOM05D006795 ORTHO05D008573 1.4e-95 353.2 221 71.9
PGR042G2278 Punica granatum HOM05D006795 ORTHO05D008573 5.5e-95 351.3 220 74.5
Lj5g0021204 Lotus japonicus HOM05D006795 ORTHO05D008573 1.2e-94 350.1 223 70.0
Haze_13816 Corylus avellana HOM05D006795 ORTHO05D008573 2.1e-94 349.4 220 72.7
Lj8A35T83 Lonicera japonica HOM05D006795 ORTHO05D008573 2.1e-94 349.4 216 73.1
FvH4_7g28300 Fragaria vesca HOM05D006795 ORTHO05D008573 2.7e-94 349.0 223 70.9
Peaxi162Scf00132g00138 Petunia axillaris HOM05D006795 ORTHO05D008573 2.7e-94 349.0 237 68.4
AUR62016086 Chenopodium quinoa HOM05D006795 ORTHO05D008573 4.6e-94 348.2 223 70.9
MD01G1187300 Malus domestica HOM05D006795 ORTHO05D008573 4.6e-94 348.2 220 71.8
Actinidia31794 Actinidia chinensis HOM05D006795 ORTHO05D008573 7.9e-94 347.4 226 72.1
Nitab4.5_0001589g0020 Nicotiana tabacum HOM05D006795 ORTHO05D008573 3.9e-93 345.1 223 70.9
Sabra15G0145100 Salix brachista HOM05D006795 ORTHO05D008573 6.7e-93 344.4 222 71.6
MD07G1259600 Malus domestica HOM05D006795 ORTHO05D008573 1.1e-92 343.6 221 70.6
Solyc11g072290.3 Solanum lycopersicum HOM05D006795 ORTHO05D008573 1.1e-92 343.6 229 70.3
FAN06G0634 Fragaria x ananassa HOM05D001585 ORTHO05D001677 1.5e-92 343.2 223 70.4
FAN06G3003 Fragaria x ananassa HOM05D001585 ORTHO05D001677 1.5e-92 343.2 223 70.4
FAN10G2418 Fragaria x ananassa HOM05D006795 ORTHO05D008573 3.3e-92 342.0 219 71.7
Prupe.2G283700 Prunus persica HOM05D006795 ORTHO05D008573 3.3e-92 342.0 225 72.0
Hund04657 Selenicereus undatus HOM05D006795 ORTHO05D008573 3.3e-92 342.0 224 70.5
CANSAT21G1655 Cannabis sativa HOM05D006795 ORTHO05D008573 4.3e-92 341.7 216 72.7
Nitab4.5_0000205g0150 Nicotiana tabacum HOM05D006795 ORTHO05D008573 5.7e-92 341.3 224 70.1
Sc13g0008130 Simmondsia chinensis HOM05D006795 ORTHO05D008573 1.6e-91 339.7 223 70.0
RcHm_v2.0_Chr1g0375271 Rosa chinensis HOM05D006795 ORTHO05D008573 8.2e-91 337.4 225 70.7
arahy.Tifrunner.gnm1.ann1.ATT3CU Arachis hypogaea HOM05D006795 ORTHO05D008573 1.1e-90 337.0 223 68.2
Nn1g01176 Nelumbo nucifera HOM05D006795 ORTHO05D008573 1.1e-90 337.0 226 69.9
arahy.Tifrunner.gnm1.ann1.939HGU Arachis hypogaea HOM05D006795 ORTHO05D008573 1.4e-90 336.7 223 68.2
Cc02_g03780 Coffea canephora HOM05D006795 ORTHO05D008573 1.8e-90 336.3 219 70.3
THA.LOC104825075 Tarenaya hassleriana HOM05D006795 ORTHO05D008573 1.8e-90 336.3 219 68.0
QL12p039358 Quercus lobata HOM05D006795 ORTHO05D008573 2.4e-90 335.9 219 70.8
Eucgr.A02872 Eucalyptus grandis HOM05D006795 ORTHO05D008573 5.3e-90 334.7 225 70.7
Glyma.20G151900 Glycine max HOM05D006795 ORTHO05D008573 5.3e-90 334.7 228 67.5
Atru.chr1.614 Acer truncatum HOM05D006795 ORTHO05D008573 1.5e-89 333.2 221 70.1
Glyma.10G242200 Glycine max HOM05D006795 ORTHO05D008573 1.5e-89 333.2 228 68.0
Lsat_1_v5_gn_2_129741 Lactuca sativa HOM05D006795 ORTHO05D008573 2.6e-89 332.4 228 68.4
vmacro06760 Vaccinium macrocarpon HOM05D006795 ORTHO05D008573 3.4e-89 332.0 226 69.0
BcaC03g14579 Brassica carinata HOM05D006795 ORTHO05D008573 5.9e-89 331.3 218 68.8
Thhalv10014608m.g Eutrema salsugineum HOM05D006795 ORTHO05D008573 7.6e-89 330.9 217 69.1
Medtr1g102470 Medicago truncatula HOM05D006795 ORTHO05D008573 1.7e-88 329.7 220 66.8
ClCG11G008970 Citrullus lanatus HOM05D006795 ORTHO05D008573 3.8e-88 328.6 226 67.7
TAR636G0045 Trochodendron aralioides HOM05D006795 ORTHO05D008573 3.8e-88 328.6 267 59.2
A02p12140 Brassica napus HOM05D006795 ORTHO05D008573 1.4e-87 326.6 218 67.4
C02p20240 Brassica napus HOM05D006795 ORTHO05D008573 4.2e-87 325.1 218 68.3
BolC2t08156H Brassica oleracea HOM05D006795 ORTHO05D008573 9.3e-87 323.9 218 67.9
EL10Ac3g05773 Beta vulgaris HOM05D006795 ORTHO05D008573 1.2e-86 323.6 225 67.1
BcaB08g35519 Brassica carinata HOM05D006795 ORTHO05D008573 1.2e-86 323.6 218 68.8
ECA238G4708 Erigeron canadensis HOM05D006795 ORTHO05D008573 1.6e-86 323.2 224 67.0
BraA02t06278Z Brassica rapa HOM05D006795 ORTHO05D008573 2.1e-86 322.8 223 67.3
AUR62035033 Chenopodium quinoa HOM05D006795 ORTHO05D008573 2.1e-86 322.8 240 63.8
CsaV3_2G010830 Cucumis sativus L. HOM05D006795 ORTHO05D008573 2.7e-86 322.4 222 67.1
PSO478G2429 Papaver somniferum HOM05D006795 ORTHO05D008573 3.6e-86 322.0 223 66.8
Aqoxy7G00570 Aquilegia oxysepala HOM05D006795 ORTHO05D008573 4.6e-86 321.6 226 68.1
BraA10t43032Z Brassica rapa HOM05D006795 ORTHO05D008573 4.6e-86 321.6 223 69.1
PSO782G4689 Papaver somniferum HOM05D006795 ORTHO05D008573 7.9e-86 320.9 223 66.8
A10p09570 Brassica napus HOM05D006795 ORTHO05D008573 2.3e-85 319.3 223 68.2
Gorai.006G196200 Gossypium raimondii HOM05D006795 ORTHO05D008573 2.3e-85 319.3 197 75.6
Lalb_Chr02g0140771 Lupinus albus HOM05D006795 ORTHO05D008573 2.3e-85 319.3 224 64.7
TPR.G26107 Trifolium pratense HOM05D006795 ORTHO05D008573 3.0e-85 318.9 223 65.9
unitig_0.g1164 Utricularia gibba HOM05D006795 ORTHO05D008573 3.9e-85 318.5 219 67.1
FAN01G1007 Fragaria x ananassa HOM05D006795 ORTHO05D008573 6.7e-85 317.8 232 66.8
Migut.F00416 Erythranthe guttata HOM05D006795 ORTHO05D008573 8.7e-85 317.4 219 65.3
Aa31LG3G8130 Aethionema arabicum HOM05D006795 ORTHO05D008573 1.9e-84 316.2 215 66.0
Manes.06G139000 Manihot esculenta HOM05D006795 ORTHO05D008573 5.9e-81 304.7 187 72.7
Sed0014900 Sechium edule HOM05D006795 ORTHO05D008573 7.7e-81 304.3 262 55.7
Rhsim03G0172800 Rhododendron simsii HOM05D006795 ORTHO05D008573 2.2e-80 302.8 296 53.4
HPP92_005470 Vanilla planifolia HOM05D006795 ORTHO05D008573 6.5e-80 301.2 215 64.2
SEGI_28069 Sequoiadendron giganteum HOM05D006795 ORTHO05D008573 1.1e-79 300.4 220 62.7
ATR1145G092 Amborella trichopoda HOM05D006795 ORTHO05D008573 1.4e-79 300.1 234 61.5
FAN03G1859 Fragaria x ananassa HOM05D001585 ORTHO05D001677 6.1e-78 294.7 190 71.1
GSVIVG01018489001 Vitis vinifera HOM05D006795 ORTHO05D008573 3.0e-77 292.4 189 71.4
FAN03G1183 Fragaria x ananassa HOM05D001585 ORTHO05D001677 5.1e-77 291.6 190 70.0
MSTRG.119 Avicennia marina HOM05D006795 ORTHO05D008573 1.5e-76 290.0 195 71.3
Ah.13g067570 Amaranthus hybridus HOM05D006795 ORTHO05D008573 3.7e-75 285.4 182 71.4
Mapoly0020s0061 Marchantia polymorpha HOM05D006795 ORTHO05D008573 1.1e-74 283.9 218 60.6
Actinidia03085 Actinidia chinensis HOM05D006795 ORTHO05D008573 1.4e-74 283.5 187 71.7
Oeu021736.1 Olea europaea HOM05D006795 ORTHO05D008573 3.1e-74 282.3 187 70.1
SGA_v2.0_scaffold2G01112 Striga asiatica HOM05D006795 ORTHO05D008573 6.9e-74 281.2 189 70.4
CDE06G1038 Ceratophyllum demersum HOM05D006795 ORTHO05D008573 2.6e-73 279.3 195 66.2
BcaB05g23990 Brassica carinata HOM05D006795 ORTHO05D008573 1.0e-72 277.3 185 68.6
Oeu042417.2 Olea europaea HOM05D006795 ORTHO05D008573 1.0e-72 277.3 224 63.8
Sopen11g029960 Solanum pennellii HOM05D006795 ORTHO05D008573 5.0e-72 275.0 192 67.7
CARHR264540 Cardamine hirsuta HOM05D006795 ORTHO05D008573 6.5e-72 274.6 186 67.7
Carub.0008s1172 Capsella rubella HOM05D006795 ORTHO05D008573 1.9e-71 273.1 181 68.5
AT5G51700 Arabidopsis thaliana HOM05D006795 ORTHO05D008573 2.5e-71 272.7 181 67.4
SalBow4G0392 Salvia bowleyana HOM05D006795 ORTHO05D008573 4.7e-70 268.5 219 59.8
SalBow4G1076 Salvia bowleyana HOM05D006795 ORTHO05D008573 4.7e-70 268.5 219 59.8
AL8G25950 Arabidopsis lyrata HOM05D006795 ORTHO05D008573 7.9e-70 267.7 181 67.4
Psat6g202120 Pisum sativum HOM05D006795 ORTHO05D008573 5.2e-69 265.0 189 66.1
Psat6g202920 Pisum sativum HOM05D006795 ORTHO05D008573 5.2e-69 265.0 189 66.1
Zm00001eb242890 Zea mays HOM05D006795 ORTHO05D008573 3.3e-68 262.3 184 63.6
Os02g0535400 Oryza sativa ssp. japonica HOM05D006795 ORTHO05D008573 4.4e-68 261.9 182 63.2
TAR629G1442 Trochodendron aralioides HOM05D006795 ORTHO05D008573 6.3e-67 258.1 200 62.0
Sp6g13920 Schrenkiella parvula HOM05D006795 ORTHO05D008573 1.8e-66 256.5 182 63.2
CSS0028605 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 9.1e-66 254.2 226 56.6
SMO146G0237 Selaginella moellendorffii HOM05D006795 ORTHO05D008573 1.6e-65 253.4 211 55.0
Ca_10834_v3 Cicer arietinum L. HOM05D006795 ORTHO05D008573 4.7e-62 241.9 220 54.1
Pp3c14_10540 Physcomitrium patens HOM05D006795 ORTHO05D008573 4.4e-60 235.3 192 57.8
CBR_g32001 Chara braunii HOM05D006795 ORTHO05D008573 2.0e-57 226.5 204 54.4
VMungo0720G2517 Vigna mungo HOM05D006795 ORTHO05D008573 4.4e-52 208.8 148 64.9
PGSC0003DMG400027380 Solanum tuberosum HOM05D006795 ORTHO05D008573 2.8e-51 206.1 131 70.2
MCO02G265 Micromonas commoda HOM05D006795 ORTHO05D008573 8.3e-51 204.5 214 44.9
Phvul.007G063300 Phaseolus vulgaris HOM05D006795 ORTHO05D008573 7.0e-50 201.4 138 65.9
Zm00001eb181460 Zea mays HOM05D006795 ORTHO05D008573 1.0e-37 161.0 94 72.3
MELO3C008527.2 Cucumis melo HOM05D006795 ORTHO05D008573 4.1e-34 149.1 75 76.0
SMO146G0045 Selaginella moellendorffii HOM05D006795 ORTHO05D008573 2.4e-18 96.7 190 35.3
PRCOL_00002330 Prasinoderma coloniale HOM05D006795 ORTHO05D008573 7.8e-09 65.1 68 41.2
GSVIVG01018488001 Vitis vinifera HOM05D006795 ORTHO05D008573 2.1e-06 57.0 35 65.7
CARHR264550 Cardamine hirsuta HOM05D006795 ORTHO05D008573 8.1e-06 55.1 31 71.0


User provided reference genes

Program Settings