Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G162900 Theobroma cacao HOM05D007548 ORTHO05D009527 5.6e-170 600.9 314 100.0
Duzib068G0425 Durio zibethinus HOM05D007548 ORTHO05D009527 9.7e-130 467.2 314 84.1
Gohir.A12G263800 Gossypium hirsutum HOM05D007548 ORTHO05D009527 5.5e-109 398.3 316 71.2
Gorai.008G283300 Gossypium raimondii HOM05D007548 ORTHO05D009527 1.8e-107 393.3 308 71.8
Gohir.D12G264100 Gossypium hirsutum HOM05D007548 ORTHO05D009527 5.7e-106 388.3 316 66.8
TWI39G0023 Tripterygium wilfordii HOM05D007548 ORTHO05D009527 1.1e-77 294.3 329 57.8
Potri.015G132000 Populus trichocarpa HOM05D007548 ORTHO05D009527 4.3e-77 292.4 318 58.2
Haze_13820 Corylus avellana HOM05D007548 ORTHO05D009527 7.3e-77 291.6 321 59.5
COL.COLO4_14190 Corchorus olitorius HOM05D007548 ORTHO05D009527 1.5e-74 283.9 243 71.6
Cfa008236 Carpinus fangiana HOM05D007548 ORTHO05D009527 1.5e-69 267.3 325 57.2
Manes.06G138600 Manihot esculenta HOM05D007548 ORTHO05D009527 5.6e-69 265.4 323 53.6
CiPaw.03G097400 Carya illinoinensis HOM05D007548 ORTHO05D009527 2.1e-68 263.5 322 55.3
Prupe.2G283000 Prunus persica HOM05D007548 ORTHO05D009527 2.8e-68 263.1 320 54.1
Atru.chr1.619 Acer truncatum HOM05D007548 ORTHO05D009527 1.5e-66 257.3 306 57.8
FvH4_7g28270 Fragaria vesca HOM05D007548 ORTHO05D009527 7.6e-66 255.0 304 55.6
FAN06G3028 Fragaria x ananassa HOM05D007548 ORTHO05D009527 7.6e-66 255.0 304 55.6
FAN06G3476 Fragaria x ananassa HOM05D007548 ORTHO05D009527 7.6e-66 255.0 304 55.6
FAN03G1824 Fragaria x ananassa HOM05D007548 ORTHO05D009527 4.9e-65 252.3 307 55.0
FAN01G2764 Fragaria x ananassa HOM05D007548 ORTHO05D009527 1.9e-61 240.4 313 53.7
Ciclev10007148m.g Citrus clementina HOM05D007548 ORTHO05D009527 1.6e-60 237.3 271 57.9
RcHm_v2.0_Chr1g0375221 Rosa chinensis HOM05D007548 ORTHO05D009527 4.9e-57 225.7 277 57.0
TAR636G2044 Trochodendron aralioides HOM05D007548 ORTHO05D009527 9.3e-56 221.5 319 48.3
FAN03G2953 Fragaria x ananassa HOM05D007548 ORTHO05D009527 1.2e-55 221.1 279 55.6
CANSAT80G1542 Cannabis sativa HOM05D007548 ORTHO05D009527 1.0e-54 218.0 282 56.7
Eucgr.K00142 Eucalyptus grandis HOM05D007548 ORTHO05D009527 2.4e-51 206.8 291 51.5
Rhsim03G0172300 Rhododendron simsii HOM05D007548 ORTHO05D009527 3.1e-51 206.5 329 48.6
DCAR_018129 Daucus carota HOM05D007548 ORTHO05D009527 4.5e-50 202.6 324 48.5
MSTRG.27166 Avicennia marina HOM05D007548 ORTHO05D009527 1.4e-48 197.6 329 46.5
Manes.14G032600 Manihot esculenta HOM05D007548 ORTHO05D009527 2.4e-48 196.8 288 46.5
Actinidia13550 Actinidia chinensis HOM05D007548 ORTHO05D009527 7.1e-48 195.3 318 45.9
Cc02_g03840 Coffea canephora HOM05D007548 ORTHO05D009527 1.2e-47 194.5 304 48.7
Oeu021733.1 Olea europaea HOM05D007548 ORTHO05D009527 6.0e-47 192.2 316 45.3
Cpa.g.sc13.212 Carica papaya HOM05D007548 ORTHO05D009527 1.3e-46 191.0 330 45.2
Oeu021734.1 Olea europaea HOM05D007548 ORTHO05D009527 1.3e-46 191.0 316 45.3
Peaxi162Scf00192g00096 Petunia axillaris HOM05D007548 ORTHO05D009527 1.3e-46 191.0 303 45.2
SalBow4G1498 Salvia bowleyana HOM05D007548 ORTHO05D009527 1.3e-46 191.0 326 47.2
Aa31LG3G8110 Aethionema arabicum HOM05D007548 ORTHO05D009527 5.6e-45 185.7 371 40.2
Actinidia25043 Actinidia chinensis HOM05D007548 ORTHO05D009527 2.1e-44 183.7 320 46.2
Nitab4.5_0008495g0030 Nicotiana tabacum HOM05D007548 ORTHO05D009527 3.7e-44 183.0 330 43.3
Lj5g0018367 Lotus japonicus HOM05D007548 ORTHO05D009527 1.1e-43 181.4 314 46.2
Lj8A35G80 Lonicera japonica HOM05D007548 ORTHO05D009527 2.0e-42 177.2 298 47.3
Glyma.10G242400 Glycine max HOM05D007548 ORTHO05D009527 3.4e-42 176.4 316 44.6
Glyma.20G151700 Glycine max HOM05D007548 ORTHO05D009527 4.5e-42 176.0 312 43.3
Nitab4.5_0000072g0300 Nicotiana tabacum HOM05D007548 ORTHO05D009527 1.0e-41 174.9 319 42.9
Medtr1g102510 Medicago truncatula HOM05D007548 ORTHO05D009527 2.2e-41 173.7 315 39.4
THA.LOC104798720 Tarenaya hassleriana HOM05D007548 ORTHO05D009527 8.4e-41 171.8 328 42.7
Carub.0008s1170 Capsella rubella HOM05D007548 ORTHO05D009527 5.5e-40 169.1 344 40.7
CARHR264530 Cardamine hirsuta HOM05D007548 ORTHO05D009527 1.2e-39 167.9 361 39.3
AL8G25930 Arabidopsis lyrata HOM05D007548 ORTHO05D009527 3.5e-39 166.4 354 40.4
AT5G51680 Arabidopsis thaliana HOM05D007548 ORTHO05D009527 3.5e-39 166.4 365 38.6
Phvul.007G063100 Phaseolus vulgaris HOM05D007548 ORTHO05D009527 6.0e-39 165.6 309 40.8
Nn4g26440 Nelumbo nucifera HOM05D007548 ORTHO05D009527 2.3e-38 163.7 332 38.9
Migut.F00422 Erythranthe guttata HOM05D007548 ORTHO05D009527 1.5e-37 161.0 321 43.0
Thhalv10014011m.g Eutrema salsugineum HOM05D007548 ORTHO05D009527 1.8e-35 154.1 346 37.9
Dinv07997 Davidia involucrata HOM05D007548 ORTHO05D009527 3.1e-35 153.3 251 47.0
EL10Ac3g05788 Beta vulgaris HOM05D007548 ORTHO05D009527 4.5e-34 149.4 286 41.6
Sopen03g003070 Solanum pennellii HOM05D007548 ORTHO05D009527 7.6e-34 148.7 328 41.5
SalBow4G2379 Salvia bowleyana HOM05D007548 ORTHO05D009527 1.0e-33 148.3 277 46.9
PGR142G1046 Punica granatum HOM05D007548 ORTHO05D009527 2.2e-33 147.1 303 40.3
VMungo0720G2396 Vigna mungo HOM05D007548 ORTHO05D009527 8.5e-33 145.2 264 42.4
arahy.Tifrunner.gnm1.ann1.WA56KQ Arachis hypogaea HOM05D001870 ORTHO05D001797 1.1e-32 144.8 314 36.9
Nn1g01184 Nelumbo nucifera HOM05D007548 ORTHO05D009527 1.9e-32 144.1 284 41.9
Psat6g202320 Pisum sativum HOM05D007548 ORTHO05D009527 1.9e-32 144.1 315 38.1
arahy.Tifrunner.gnm1.ann1.J4U887 Arachis hypogaea HOM05D001870 ORTHO05D001797 7.2e-32 142.1 314 36.6
GSVIVG01018495001 Vitis vinifera HOM05D007548 ORTHO05D009527 7.2e-32 142.1 169 52.7
Sp6g13900 Schrenkiella parvula HOM05D007548 ORTHO05D009527 2.1e-31 140.6 399 33.6
AUR62016096 Chenopodium quinoa HOM05D007548 ORTHO05D009527 1.0e-30 138.3 303 39.3
AUR62035044 Chenopodium quinoa HOM05D007548 ORTHO05D009527 3.9e-30 136.3 299 39.1
PGSC0003DMG400031012 Solanum tuberosum HOM05D007548 ORTHO05D009527 5.1e-30 136.0 330 40.0
Solyc03g007080.4 Solanum lycopersicum HOM05D007548 ORTHO05D009527 4.3e-29 132.9 258 42.2
Lalb_Chr21g0304861 Lupinus albus HOM05D007548 ORTHO05D009527 8.2e-28 128.6 312 38.5
BcaC04g20644 Brassica carinata HOM05D007548 ORTHO05D009527 5.0e-25 119.4 340 34.4
C09p41110 Brassica napus HOM05D007548 ORTHO05D009527 5.0e-25 119.4 340 34.4
BolC9t56989H Brassica oleracea HOM05D007548 ORTHO05D009527 5.0e-25 119.4 340 34.4
Ah.07g208330 Amaranthus hybridus HOM05D007548 ORTHO05D009527 8.5e-25 118.6 306 36.6
BcaB08g35518 Brassica carinata HOM05D007548 ORTHO05D009527 2.5e-24 117.1 354 34.5
BraA10t43031Z Brassica rapa HOM05D007548 ORTHO05D009527 7.2e-24 115.5 343 33.5
A10p09560 Brassica napus HOM05D007548 ORTHO05D009527 9.4e-24 115.2 343 33.8
PSO782G0883 Papaver somniferum HOM05D007548 ORTHO05D009527 5.7e-21 105.9 307 35.2
SGA_v2.0_scaffold2G01130 Striga asiatica HOM05D007548 ORTHO05D009527 9.7e-21 105.1 303 38.0
HanXRQChr05g0141371 Helianthus annuus HOM05D007548 ORTHO05D009527 1.3e-20 104.8 300 36.3
FAN10G1395 Fragaria x ananassa HOM05D007548 ORTHO05D009527 6.3e-20 102.4 199 44.7
TPR.G26079 Trifolium pratense HOM05D007548 ORTHO05D009527 6.3e-20 102.4 313 33.9
Lsat_1_v5_gn_8_8041 Lactuca sativa HOM05D007548 ORTHO05D009527 1.8e-19 100.9 323 34.7
Aqoxy7G00579 Aquilegia oxysepala HOM05D007548 ORTHO05D009527 5.3e-19 99.4 367 31.1
Sc25g0000160 Simmondsia chinensis HOM05D007548 ORTHO05D009527 6.9e-19 99.0 314 34.1
ECA233G0652 Erigeron canadensis HOM05D007548 ORTHO05D009527 2.9e-17 93.6 321 35.2
A02p12160 Brassica napus HOM05D007548 ORTHO05D009527 5.5e-16 89.4 364 28.0
PSO478G0091 Papaver somniferum HOM05D007548 ORTHO05D009527 9.4e-16 88.6 271 30.6
SGA_v2.0_scaffold486G52377 Striga asiatica HOM05D007548 ORTHO05D009527 1.6e-15 87.8 317 34.4
unitig_37.g12505 Utricularia gibba HOM05D007548 ORTHO05D009527 3.6e-15 86.7 276 37.3
arahy.Tifrunner.gnm1.ann1.1QTB59 Arachis hypogaea HOM05D007548 ORTHO05D009527 3.9e-14 83.2 211 32.2
BolC2t08158H Brassica oleracea HOM05D007548 ORTHO05D009527 8.8e-14 82.0 364 27.2
arahy.Tifrunner.gnm1.ann1.Z61DE3 Arachis hypogaea HOM05D007548 ORTHO05D009527 1.5e-13 81.3 272 27.6
Ah.13g067520 Amaranthus hybridus HOM05D007548 ORTHO05D009527 1.1e-11 75.1 271 31.7
BraA02t06280Z Brassica rapa HOM05D007548 ORTHO05D009527 1.1e-11 75.1 361 28.5
BcaC03g14581 Brassica carinata HOM05D007548 ORTHO05D009527 1.2e-10 71.6 175 36.0
BcaB05g23992 Brassica carinata HOM05D007548 ORTHO05D009527 3.2e-08 63.5 338 26.6


User provided reference genes

Program Settings