Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G162400 Theobroma cacao HOM05D004422 ORTHO05D408086 2.3e-51 205.3 105 100.0
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 9.8e-10 67.0 45 71.1
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 1.7e-09 66.2 47 68.1
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 1.7e-09 66.2 45 71.1
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 1.7e-09 66.2 45 71.1
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 1.7e-09 66.2 45 71.1
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 1.8e-08 62.8 45 64.4
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 1.8e-08 62.8 47 61.7
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 1.8e-08 62.8 45 66.7
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 3.1e-08 62.0 45 62.2
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 4.1e-08 61.6 45 62.2
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 7.0e-08 60.8 45 60.0
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 1.6e-07 59.7 45 62.2
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 2.0e-07 59.3 45 62.2
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 2.7e-07 58.9 45 62.2
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 2.7e-07 58.9 45 60.0
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 2.7e-07 58.9 45 55.6
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 3.5e-07 58.5 45 57.8
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 3.5e-07 58.5 45 57.8
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 3.5e-07 58.5 88 37.5
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 3.5e-07 58.5 45 60.0
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 3.5e-07 58.5 45 62.2
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 4.5e-07 58.2 45 57.8
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 4.5e-07 58.2 45 57.8
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 4.5e-07 58.2 45 57.8
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 4.5e-07 58.2 45 60.0
Thecc.05G208900 Theobroma cacao HOM05D004422 ORTHO05D409730 5.9e-07 57.8 55 61.8
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 7.7e-07 57.4 45 60.0
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 7.7e-07 57.4 45 57.8
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 7.7e-07 57.4 45 57.8
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 7.7e-07 57.4 45 55.6
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 7.7e-07 57.4 45 55.6
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 1.0e-06 57.0 82 40.2
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 1.3e-06 56.6 45 55.6
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 1.3e-06 56.6 45 60.0
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 1.7e-06 56.2 45 55.6
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 1.7e-06 56.2 45 60.0
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 1.7e-06 56.2 43 60.5
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 1.7e-06 56.2 45 60.0
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 2.3e-06 55.8 44 61.4
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 2.3e-06 55.8 45 53.3
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 2.3e-06 55.8 45 55.6
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 2.3e-06 55.8 45 62.2
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 2.9e-06 55.5 45 57.8
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 3.8e-06 55.1 45 57.8
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 3.8e-06 55.1 45 60.0
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 3.8e-06 55.1 82 37.8
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 5.0e-06 54.7 45 53.3
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 5.0e-06 54.7 45 57.8
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 5.0e-06 54.7 45 53.3
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 5.0e-06 54.7 45 51.1
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 5.0e-06 54.7 62 45.2
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 5.0e-06 54.7 45 53.3
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 6.6e-06 54.3 45 55.6
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 6.6e-06 54.3 45 57.8
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 6.6e-06 54.3 44 59.1
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 8.6e-06 53.9 45 55.6
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 8.6e-06 53.9 45 55.6
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 8.6e-06 53.9 45 53.3


User provided reference genes

Program Settings