Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G146100 Theobroma cacao HOM05D002037 ORTHO05D005586 1.4e-76 289.7 162 100.0
Thecc.08G172900 Theobroma cacao HOM05D002037 ORTHO05D005586 7.4e-49 197.6 126 87.3
Duzib177G0635 Durio zibethinus HOM05D002037 ORTHO05D005586 1.8e-47 193.0 126 85.7
COL.COLO4_15466 Corchorus olitorius HOM05D002037 ORTHO05D005586 1.2e-46 190.3 126 84.9
Gohir.A13G118600 Gossypium hirsutum HOM05D002037 ORTHO05D005586 1.4e-44 183.3 126 81.7
Gohir.D13G122400 Gossypium hirsutum HOM05D002037 ORTHO05D005586 1.4e-44 183.3 126 81.7
Gorai.013G137200 Gossypium raimondii HOM05D002037 ORTHO05D005586 1.4e-44 183.3 126 81.7
THA.LOC104802261 Tarenaya hassleriana HOM05D002037 ORTHO05D005586 5.7e-41 171.4 124 76.6
Duzib116G0244 Durio zibethinus HOM05D002037 ORTHO05D005586 1.3e-40 170.2 128 76.6
BcaC07g40367 Brassica carinata HOM05D002037 ORTHO05D005586 2.4e-39 166.0 124 75.8
BcaC07g40389 Brassica carinata HOM05D002037 ORTHO05D005586 2.4e-39 166.0 124 75.8
C08p33110 Brassica napus HOM05D002037 ORTHO05D005586 2.4e-39 166.0 124 75.8
BolC8t50911H Brassica oleracea HOM05D002037 ORTHO05D005586 2.4e-39 166.0 124 75.8
Thhalv10006042m.g Eutrema salsugineum HOM05D002037 ORTHO05D005586 2.4e-39 166.0 124 75.8
AL5G39140 Arabidopsis lyrata HOM05D002037 ORTHO05D005586 4.1e-39 165.2 124 75.0
AT3G57560 Arabidopsis thaliana HOM05D002037 ORTHO05D005586 4.1e-39 165.2 124 75.0
Carub.0005s2440 Capsella rubella HOM05D002037 ORTHO05D005586 4.1e-39 165.2 124 75.0
A09p50430 Brassica napus HOM05D002037 ORTHO05D005586 5.3e-39 164.9 124 75.0
BraA09t40494Z Brassica rapa HOM05D002037 ORTHO05D005586 5.3e-39 164.9 124 75.0
Aa31sc1187G30 Aethionema arabicum HOM05D002037 ORTHO05D005586 6.9e-39 164.5 124 75.0
Aa31sc992G40 Aethionema arabicum HOM05D002037 ORTHO05D005586 6.9e-39 164.5 124 75.0
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 6.9e-39 164.5 124 75.8
CARHR167790 Cardamine hirsuta HOM05D002037 ORTHO05D005586 9.1e-39 164.1 124 74.2
A04p03050 Brassica napus HOM05D002037 ORTHO05D005586 1.2e-38 163.7 124 75.0
BraA04t16028Z Brassica rapa HOM05D002037 ORTHO05D005586 1.2e-38 163.7 124 75.0
Potri.018G001600 Populus trichocarpa HOM05D002037 ORTHO05D005586 1.5e-38 163.3 124 75.8
Atru.chr7.2707 Acer truncatum HOM05D002037 ORTHO05D005586 5.9e-38 161.4 124 73.4
BcaC02g09949 Brassica carinata HOM05D002037 ORTHO05D005586 5.9e-38 161.4 124 73.4
C04p34850 Brassica napus HOM05D002037 ORTHO05D005586 5.9e-38 161.4 124 73.4
BolC4t25037H Brassica oleracea HOM05D002037 ORTHO05D005586 5.9e-38 161.4 124 73.4
Cfa013231 Carpinus fangiana HOM05D002037 ORTHO05D005586 7.7e-38 161.0 124 72.6
Ciclev10008739m.g Citrus clementina HOM05D002037 ORTHO05D005586 1.0e-37 160.6 124 72.6
CiPaw.07G216400 Carya illinoinensis HOM05D002037 ORTHO05D005586 1.3e-37 160.2 124 73.4
BcaB02g08309 Brassica carinata HOM05D002037 ORTHO05D005586 1.7e-37 159.8 124 73.4
Lalb_Chr23g0268941 Lupinus albus HOM05D002037 ORTHO05D005586 1.7e-37 159.8 124 74.2
Manes.10G056500 Manihot esculenta HOM05D002037 ORTHO05D005586 2.2e-37 159.5 124 75.0
Potri.006G280100 Populus trichocarpa HOM05D002037 ORTHO05D005586 2.2e-37 159.5 124 75.0
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 2.9e-37 159.1 124 73.4
Manes.07G077700 Manihot esculenta HOM05D002037 ORTHO05D005586 3.8e-37 158.7 124 74.2
Sp5g05030 Schrenkiella parvula HOM05D002037 ORTHO05D005586 3.8e-37 158.7 124 72.6
Glyma.04G073800 Glycine max HOM05D002037 ORTHO05D005586 6.5e-37 157.9 124 72.6
Psat5g026120 Pisum sativum HOM05D002037 ORTHO05D005586 6.5e-37 157.9 124 71.0
Cpa.g.sc6.178 Carica papaya HOM05D002037 ORTHO05D005586 8.5e-37 157.5 124 74.2
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 8.5e-37 157.5 124 73.4
Haze_21661 Corylus avellana HOM05D002037 ORTHO05D005586 1.1e-36 157.1 124 71.8
Eucgr.C02143 Eucalyptus grandis HOM05D002037 ORTHO05D005586 1.4e-36 156.8 124 73.4
Glyma.06G074900 Glycine max HOM05D002037 ORTHO05D005586 3.2e-36 155.6 124 71.8
Phvul.009G099600 Phaseolus vulgaris HOM05D002037 ORTHO05D005586 1.2e-35 153.7 124 71.8
TWI14G0248 Tripterygium wilfordii HOM05D002037 ORTHO05D005586 1.2e-35 153.7 124 71.0
Migut.F01615 Erythranthe guttata HOM05D002037 ORTHO05D005586 2.1e-35 152.9 124 70.2
QL12p030933 Quercus lobata HOM05D002037 ORTHO05D005586 4.7e-35 151.8 124 71.0
TAR636G3119 Trochodendron aralioides HOM05D002037 ORTHO05D005586 6.1e-35 151.4 124 70.2
Ah.05g177530 Amaranthus hybridus HOM05D002037 ORTHO05D005586 7.9e-35 151.0 124 70.2
AUR62004328 Chenopodium quinoa HOM05D002037 ORTHO05D005586 1.0e-34 150.6 124 70.2
ClCG08G012830 Citrullus lanatus HOM05D002037 ORTHO05D005586 1.0e-34 150.6 124 71.0
MELO3C011208.2 Cucumis melo HOM05D002037 ORTHO05D005586 1.0e-34 150.6 124 71.0
Lj1g0005088 Lotus japonicus HOM05D002037 ORTHO05D005586 1.0e-34 150.6 124 71.0
AUR62033316 Chenopodium quinoa HOM05D002037 ORTHO05D005586 1.8e-34 149.8 124 70.2
AUR62033343 Chenopodium quinoa HOM05D002037 ORTHO05D005586 1.8e-34 149.8 124 70.2
vmacro20743 Vaccinium macrocarpon HOM05D002037 ORTHO05D005586 1.8e-34 149.8 124 70.2
GSVIVG01035586001 Vitis vinifera HOM05D002037 ORTHO05D005586 1.8e-34 149.8 124 68.5
CSS0019677 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005586 2.3e-34 149.4 124 69.4
Medtr3g108460 Medicago truncatula HOM05D002037 ORTHO05D005586 2.3e-34 149.4 124 71.0
Sed0022277 Sechium edule HOM05D002037 ORTHO05D005586 2.3e-34 149.4 124 70.2
Sed0016385 Sechium edule HOM05D002037 ORTHO05D005586 3.0e-34 149.1 124 70.2
Ah.05g177540 Amaranthus hybridus HOM05D002037 ORTHO05D005586 3.9e-34 148.7 124 69.4
Migut.H01099 Erythranthe guttata HOM05D002037 ORTHO05D005586 3.9e-34 148.7 124 68.5
CsaV3_2G031570 Cucumis sativus L. HOM05D002037 ORTHO05D005586 5.1e-34 148.3 124 70.2
MSTRG.2681 Avicennia marina HOM05D002037 ORTHO05D005586 6.7e-34 147.9 124 65.3
Peaxi162Scf00178g00004 Petunia axillaris HOM05D002037 ORTHO05D005586 8.8e-34 147.5 124 69.4
Rhsim01G0105900 Rhododendron simsii HOM05D002037 ORTHO05D005586 8.8e-34 147.5 124 68.5
Rhsim07G0172400 Rhododendron simsii HOM05D002037 ORTHO05D005586 8.8e-34 147.5 124 68.5
Rhsim07G0173100 Rhododendron simsii HOM05D002037 ORTHO05D005586 8.8e-34 147.5 124 68.5
RhsimUnG0016600 Rhododendron simsii HOM05D002037 ORTHO05D005586 8.8e-34 147.5 124 68.5
Lj8A3T12 Lonicera japonica HOM05D002037 ORTHO05D005586 1.5e-33 146.7 124 69.4
Oeu019002.1 Olea europaea HOM05D002037 ORTHO05D005586 1.5e-33 146.7 120 70.0
Oeu048127.1 Olea europaea HOM05D002037 ORTHO05D005586 1.5e-33 146.7 124 66.9
FAN24G2569 Fragaria x ananassa HOM05D002037 ORTHO05D005586 2.0e-33 146.4 124 65.3
Nitab4.5_0000320g0090 Nicotiana tabacum HOM05D002037 ORTHO05D005586 2.0e-33 146.4 124 69.4
Nitab4.5_0006112g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005586 2.0e-33 146.4 124 69.4
Peaxi162Scf00896g00012 Petunia axillaris HOM05D002037 ORTHO05D005586 2.0e-33 146.4 124 68.5
Dinv09453 Davidia involucrata HOM05D002037 ORTHO05D005586 2.6e-33 146.0 120 68.3
Zm00001eb074610 Zea mays HOM05D002037 ORTHO05D005586 2.6e-33 146.0 124 66.1
Solyc11g005620.1 Solanum lycopersicum HOM05D002037 ORTHO05D005586 3.3e-33 145.6 124 68.5
Sopen11g001580 Solanum pennellii HOM05D002037 ORTHO05D005586 3.3e-33 145.6 124 68.5
Aqoxy5G02379 Aquilegia oxysepala HOM05D002037 ORTHO05D005586 4.4e-33 145.2 124 67.7
Os02g0657600 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005586 4.4e-33 145.2 124 66.1
Os04g0550500 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005586 4.4e-33 145.2 124 67.7
PGSC0003DMG400003981 Solanum tuberosum HOM05D002037 ORTHO05D005586 4.4e-33 145.2 124 68.5
Zm00001eb186530 Zea mays HOM05D002037 ORTHO05D005586 4.4e-33 145.2 124 66.9
SalBow6G1621 Salvia bowleyana HOM05D002037 ORTHO05D005586 5.7e-33 144.8 124 65.3
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 5.7e-33 144.8 124 65.3
TPR.G12308 Trifolium pratense HOM05D002037 ORTHO05D005586 5.7e-33 144.8 124 68.5
MSTRG.23424 Avicennia marina HOM05D002037 ORTHO05D005586 9.7e-33 144.1 124 66.9
Prupe.1G463900 Prunus persica HOM05D002037 ORTHO05D005586 1.3e-32 143.7 124 66.9
FAN27G1718 Fragaria x ananassa HOM05D002037 ORTHO05D005586 1.7e-32 143.3 124 63.7
FvH4_2g30500 Fragaria vesca HOM05D002037 ORTHO05D005586 2.8e-32 142.5 124 63.7
Nn1g00932 Nelumbo nucifera HOM05D002037 ORTHO05D005586 3.7e-32 142.1 125 67.2
Sc23g0004800 Simmondsia chinensis HOM05D002037 ORTHO05D005586 3.7e-32 142.1 126 64.3
SGA_v2.0_scaffold231G43409 Striga asiatica HOM05D002037 ORTHO05D005586 4.8e-32 141.7 124 67.7
CANSAT25G2792 Cannabis sativa HOM05D002037 ORTHO05D005586 6.3e-32 141.4 124 65.3
CAN.G135.28 Capsicum annuum HOM05D002037 ORTHO05D005586 1.4e-31 140.2 124 67.7
MD08G1134500 Malus domestica HOM05D002037 ORTHO05D005586 2.4e-31 139.4 126 65.9
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 4.1e-31 138.7 124 65.3
Lsat_1_v5_gn_5_164581 Lactuca sativa HOM05D002037 ORTHO05D005586 5.3e-31 138.3 124 65.3
PGR102G0041 Punica granatum HOM05D002037 ORTHO05D005586 5.3e-31 138.3 125 65.6
HanXRQChr10g0278011 Helianthus annuus HOM05D002037 ORTHO05D005586 7.0e-31 137.9 124 65.3
PSO063G5534 Papaver somniferum HOM05D002037 ORTHO05D005586 7.0e-31 137.9 124 64.5
unitig_8.g3509 Utricularia gibba HOM05D002037 ORTHO05D005586 7.0e-31 137.9 125 62.4
RcHm_v2.0_Chr6g0312541 Rosa chinensis HOM05D002037 ORTHO05D005586 9.1e-31 137.5 124 62.1
HPP92_022465 Vanilla planifolia HOM05D002037 ORTHO05D005586 1.2e-30 137.1 124 62.1
FAN20G1771 Fragaria x ananassa HOM05D002037 ORTHO05D005586 2.0e-30 136.3 124 62.1
Hund19379 Selenicereus undatus HOM05D002037 ORTHO05D005586 2.0e-30 136.3 124 64.5
Cc07_g17450 Coffea canephora HOM05D002037 ORTHO05D005586 2.6e-30 136.0 120 65.8
ECA248G2210 Erigeron canadensis HOM05D002037 ORTHO05D005586 2.6e-30 136.0 124 64.5
Hma1.2p1_1382F.1_g279370 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 2.6e-30 136.0 124 63.7
ECA234G1135 Erigeron canadensis HOM05D002037 ORTHO05D005586 1.0e-29 134.0 124 63.7
DCAR_020609 Daucus carota HOM05D002037 ORTHO05D005586 1.3e-29 133.7 124 64.5
Haze_05098 Corylus avellana HOM05D002037 ORTHO05D005586 1.7e-29 133.3 100 75.0
SHI12423 Sapria himalayana HOM05D002037 ORTHO05D005586 2.2e-29 132.9 120 64.2
Sc23g0004440 Simmondsia chinensis HOM05D002037 ORTHO05D005586 8.5e-29 131.0 123 62.6
SEGI_19958 Sequoiadendron giganteum HOM05D002037 ORTHO05D005586 2.0e-25 119.8 124 58.9
SEGI_35978 Sequoiadendron giganteum HOM05D002037 ORTHO05D005586 2.0e-25 119.8 124 58.9
ATR0782G017 Amborella trichopoda HOM05D002037 ORTHO05D005586 4.4e-25 118.6 124 57.3
AagrBONN_evm.TU.Sc2ySwM_344.3516 Anthoceros agrestis HOM05D002037 ORTHO05D005586 4.4e-25 118.6 124 58.1
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.4e-25 118.6 117 64.1
RcHm_v2.0_Chr3g0471221 Rosa chinensis HOM05D002037 ORTHO05D005586 3.7e-24 115.5 98 64.3
Pp3c4_8600 Physcomitrium patens HOM05D002037 ORTHO05D005586 4.8e-24 115.2 124 54.8
Mapoly0031s0070 Marchantia polymorpha HOM05D002037 ORTHO05D005586 1.8e-23 113.2 124 57.3
SMO364G0053 Selaginella moellendorffii HOM05D002037 ORTHO05D005586 2.0e-22 109.8 124 54.8
CBR_g84854 Chara braunii HOM05D002037 ORTHO05D005586 7.7e-22 107.8 120 56.7
RcHm_v2.0_Chr6g0292021 Rosa chinensis HOM05D002037 ORTHO05D005586 7.7e-22 107.8 98 62.2
Actinidia03569 Actinidia chinensis HOM05D002037 ORTHO05D005586 2.9e-21 105.9 124 57.3
MCO12G331 Micromonas commoda HOM05D002037 ORTHO05D005586 2.9e-21 105.9 125 52.8
RcHm_v2.0_Chr7g0238931 Rosa chinensis HOM05D002037 ORTHO05D005586 2.9e-21 105.9 98 59.2
CBR_g38963 Chara braunii HOM05D002037 ORTHO05D005586 3.2e-20 102.4 120 55.0
Actinidia14156 Actinidia chinensis HOM05D002037 ORTHO05D005586 9.4e-20 100.9 81 69.1
Cre01.g015000 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005586 2.7e-19 99.4 120 50.8
Sc23g0004780 Simmondsia chinensis HOM05D002037 ORTHO05D005586 1.8e-18 96.7 96 64.6
Sc23g0004670 Simmondsia chinensis HOM05D002037 ORTHO05D005586 3.0e-18 95.9 102 58.8
RcHm_v2.0_Chr5g0021691 Rosa chinensis HOM05D002037 ORTHO05D005586 4.0e-18 95.5 74 66.2
PRCOL_00003640 Prasinoderma coloniale HOM05D002037 ORTHO05D005586 4.2e-12 75.5 126 44.4
Haze_27393 Corylus avellana HOM05D002037 ORTHO05D005586 5.5e-12 75.1 136 40.4
Cc00_g30070 Coffea canephora HOM05D002037 ORTHO05D005586 9.5e-12 74.3 120 45.0
RcHm_v2.0_Chr6g0246551 Rosa chinensis HOM05D002037 ORTHO05D005586 3.4e-09 65.9 65 56.9
Cc07_g16850 Coffea canephora HOM05D002037 ORTHO05D005586 1.3e-08 63.9 64 59.4
HanXRQChr10g0278111 Helianthus annuus HOM05D002037 ORTHO05D005586 8.3e-08 61.2 120 44.2
HanXRQChr11g0330611 Helianthus annuus HOM05D002037 ORTHO05D005586 8.3e-08 61.2 120 44.2


User provided reference genes

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