Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G143400 Theobroma cacao HOM05D007228 ORTHO05D009099 3.8e-279 964.1 476 100.0
Duzib205G0703 Durio zibethinus HOM05D007228 ORTHO05D009099 4.9e-210 734.6 425 87.3
Gohir.D12G197500 Gossypium hirsutum HOM05D007228 ORTHO05D009099 2.5e-209 732.3 420 85.5
Gohir.A12G195100 Gossypium hirsutum HOM05D007228 ORTHO05D009099 1.3e-202 709.9 408 85.0
Gorai.008G212000 Gossypium raimondii HOM05D007228 ORTHO05D009099 1.3e-199 699.9 399 85.2
COL.COLO4_37286 Corchorus olitorius HOM05D007228 ORTHO05D009099 1.2e-184 650.2 420 79.0
Ciclev10030919m.g Citrus clementina HOM05D007228 ORTHO05D009099 4.4e-174 615.1 420 72.1
Atru.chr6.1953 Acer truncatum HOM05D007228 ORTHO05D009099 3.1e-172 609.0 421 70.5
Potri.015G109700 Populus trichocarpa HOM05D007228 ORTHO05D009099 3.0e-167 592.4 420 70.5
Cpa.g.sc13.201 Carica papaya HOM05D007228 ORTHO05D009099 9.8e-166 587.4 420 68.8
GSVIVG01014990001 Vitis vinifera HOM05D007228 ORTHO05D009099 6.3e-165 584.7 420 68.3
Dinv13695 Davidia involucrata HOM05D007228 ORTHO05D009099 1.1e-164 583.9 425 68.9
TWI39G0517 Tripterygium wilfordii HOM05D007228 ORTHO05D009099 3.5e-163 578.9 420 67.9
Manes.06G128600 Manihot esculenta HOM05D007228 ORTHO05D009099 2.9e-162 575.9 424 68.6
QL10p000149 Quercus lobata HOM05D007228 ORTHO05D009099 9.5e-161 570.9 423 67.1
Hma1.2p1_0338F.1_g129520 Hydrangea macrophylla HOM05D007228 ORTHO05D009099 1.4e-159 567.0 425 66.6
Cfa018687 Carpinus fangiana HOM05D007228 ORTHO05D009099 2.7e-155 552.7 423 65.0
Haze_07072 Corylus avellana HOM05D007228 ORTHO05D009099 5.6e-153 545.0 450 62.2
CSS0045118 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 7.3e-153 544.7 424 65.3
AL6G17680 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 6.8e-151 538.1 420 60.5
Thhalv10012911m.g Eutrema salsugineum HOM05D007228 ORTHO05D009099 5.7e-150 535.0 420 61.0
Manes.14G042701 Manihot esculenta HOM05D007228 ORTHO05D009099 5.7e-150 535.0 443 62.3
FvH4_5g10000 Fragaria vesca HOM05D007228 ORTHO05D009099 1.7e-149 533.5 477 56.4
MD06G1128600 Malus domestica HOM05D007228 ORTHO05D009099 1.7e-149 533.5 455 61.3
CARHR205770 Cardamine hirsuta HOM05D007228 ORTHO05D009099 2.2e-149 533.1 420 61.0
THA.LOC104819419 Tarenaya hassleriana HOM05D007228 ORTHO05D009099 1.4e-148 530.4 420 61.2
FAN04G0692 Fragaria x ananassa HOM05D007228 ORTHO05D009099 4.1e-148 528.9 477 55.8
FAN18G1110 Fragaria x ananassa HOM05D007228 ORTHO05D009099 5.4e-148 528.5 474 55.9
C09p69520 Brassica napus HOM05D007228 ORTHO05D009099 7.0e-148 528.1 421 60.6
BolC9t59696H Brassica oleracea HOM05D007228 ORTHO05D009099 7.0e-148 528.1 421 60.6
BraA10t44962Z Brassica rapa HOM05D007228 ORTHO05D009099 7.0e-148 528.1 421 60.6
Carub.0006s0635 Capsella rubella HOM05D007228 ORTHO05D009099 4.6e-147 525.4 420 59.3
vmacro19097 Vaccinium macrocarpon HOM05D007228 ORTHO05D009099 7.8e-147 524.6 430 63.5
AT5G07380 Arabidopsis thaliana HOM05D007228 ORTHO05D009099 1.0e-146 524.2 420 60.0
TAR629G1179 Trochodendron aralioides HOM05D007228 ORTHO05D009099 2.3e-146 523.1 423 63.8
A10p29130 Brassica napus HOM05D007228 ORTHO05D009099 1.1e-145 520.8 421 60.3
FAN08G0661 Fragaria x ananassa HOM05D007228 ORTHO05D009099 1.8e-143 513.5 422 60.4
Rhsim08G0200200 Rhododendron simsii HOM05D007228 ORTHO05D009099 4.0e-143 512.3 425 61.2
Lj4g0027006 Lotus japonicus HOM05D007228 ORTHO05D009099 4.4e-142 508.8 421 58.9
BcaC06g32443 Brassica carinata HOM05D007228 ORTHO05D009099 2.2e-141 506.5 420 58.1
Solyc03g117990.1 Solanum lycopersicum HOM05D007228 ORTHO05D009099 1.4e-140 503.8 426 58.2
Sopen03g036890 Solanum pennellii HOM05D007228 ORTHO05D009099 7.0e-140 501.5 426 58.2
PSO478G4831 Papaver somniferum HOM05D007228 ORTHO05D009099 1.2e-139 500.7 426 60.1
PSO017G4664 Papaver somniferum HOM05D007228 ORTHO05D009099 1.7e-138 496.9 425 59.3
Migut.D01167 Erythranthe guttata HOM05D007228 ORTHO05D009099 8.6e-138 494.6 439 58.5
Nn3g16198 Nelumbo nucifera HOM05D007228 ORTHO05D009099 2.5e-137 493.0 424 61.3
Phvul.002G279800 Phaseolus vulgaris HOM05D007228 ORTHO05D009099 1.6e-136 490.3 423 57.2
Aqoxy5G02968 Aquilegia oxysepala HOM05D007228 ORTHO05D009099 4.7e-136 488.8 442 56.6
Glyma.08G006100 Glycine max HOM05D007228 ORTHO05D009099 1.4e-135 487.3 423 58.2
Actinidia18280 Actinidia chinensis HOM05D007228 ORTHO05D009099 2.3e-135 486.5 425 59.8
VMungo0251G0919 Vigna mungo HOM05D007228 ORTHO05D009099 2.3e-135 486.5 431 58.0
Peaxi162Scf00314g00833 Petunia axillaris HOM05D007228 ORTHO05D009099 5.2e-135 485.3 426 57.3
Sabra15G0131800 Salix brachista HOM05D007228 ORTHO05D009099 1.2e-134 484.2 350 68.9
Ca_16830_v3 Cicer arietinum L. HOM05D007228 ORTHO05D009099 2.6e-134 483.0 422 56.2
arahy.Tifrunner.gnm1.ann1.E4K3LT Arachis hypogaea HOM05D007228 ORTHO05D009099 1.6e-131 473.8 423 55.6
arahy.Tifrunner.gnm1.ann1.RK1GDQ Arachis hypogaea HOM05D007228 ORTHO05D009099 6.0e-131 471.9 423 55.3
Cc04_g05590 Coffea canephora HOM05D007228 ORTHO05D009099 6.0e-131 471.9 430 57.0
HanXRQChr08g0229031 Helianthus annuus HOM05D007228 ORTHO05D009099 1.3e-130 470.7 448 55.8
Psat7g040280 Pisum sativum HOM05D007228 ORTHO05D009099 1.7e-130 470.3 426 55.9
Medtr8g095540 Medicago truncatula HOM05D007228 ORTHO05D009099 4.3e-129 465.7 422 55.0
Nitab4.5_0000976g0280 Nicotiana tabacum HOM05D007228 ORTHO05D009099 3.1e-127 459.5 417 54.9
RcHm_v2.0_Chr7g0188261 Rosa chinensis HOM05D007228 ORTHO05D009099 1.2e-126 457.6 359 61.6
Aa31LG3G18990 Aethionema arabicum HOM05D007228 ORTHO05D009099 2.2e-125 453.4 371 59.8
Nitab4.5_0011883g0020 Nicotiana tabacum HOM05D007228 ORTHO05D009099 2.4e-124 449.9 426 54.0
SalBow1G3473 Salvia bowleyana HOM05D007228 ORTHO05D009099 1.9e-121 440.3 431 53.6
Sed0011749 Sechium edule HOM05D007228 ORTHO05D009099 2.5e-121 439.9 422 54.0
SGA_v2.0_scaffold515G52653 Striga asiatica HOM05D007228 ORTHO05D009099 4.4e-118 429.1 430 52.1
Lsat_1_v5_gn_1_30460 Lactuca sativa HOM05D007228 ORTHO05D009099 5.8e-118 428.7 361 58.7
CAN.G1008.38 Capsicum annuum HOM05D007228 ORTHO05D009099 9.9e-118 427.9 428 52.6
ECA247G3190 Erigeron canadensis HOM05D007228 ORTHO05D009099 2.9e-117 426.4 358 59.5
MBI11_g17279_MAGBIO Magnolia biondii HOM05D007228 ORTHO05D009099 5.4e-116 422.2 354 58.5
ClCG07G006120 Citrullus lanatus HOM05D007228 ORTHO05D009099 2.1e-115 420.2 422 54.0
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 2.3e-114 416.8 413 54.0
Prupe.5G138400 Prunus persica HOM05D007228 ORTHO05D009099 3.9e-114 416.0 294 68.4
PGR142G1350 Punica granatum HOM05D007228 ORTHO05D009099 1.2e-107 394.4 485 46.4
Eucgr.E04338 Eucalyptus grandis HOM05D007228 ORTHO05D009099 1.5e-105 387.5 427 50.6
EL10Ac5g11261 Beta vulgaris HOM05D007228 ORTHO05D009099 1.3e-104 384.4 482 46.5
CsaV3_5G013390 Cucumis sativus L. HOM05D007228 ORTHO05D009099 1.8e-103 380.6 480 45.4
Os01g0103900 Oryza sativa ssp. japonica HOM05D007228 ORTHO05D009099 9.0e-103 378.3 422 48.3
MELO3C018355.2 Cucumis melo HOM05D007228 ORTHO05D009099 1.6e-99 367.5 357 51.8
Zm00001eb334150 Zea mays HOM05D007228 ORTHO05D009099 1.8e-98 364.0 435 44.8
TPR.G12794 Trifolium pratense HOM05D007228 ORTHO05D009099 3.9e-98 362.8 312 55.1
Lj9C489T6 Lonicera japonica HOM05D007228 ORTHO05D009099 1.1e-97 361.3 361 54.0
AUR62036968 Chenopodium quinoa HOM05D007228 ORTHO05D009099 2.5e-89 333.6 377 49.6
CSS0001938 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 2.1e-88 330.5 262 64.9
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 4.2e-84 316.2 504 41.3
Lalb_Chr12g0202641 Lupinus albus HOM05D007228 ORTHO05D009099 1.8e-82 310.8 258 59.3
GSVIVG01035283001 Vitis vinifera HOM05D007228 ORTHO05D009099 1.5e-81 307.8 261 60.2
Hund02521 Selenicereus undatus HOM05D007228 ORTHO05D009099 1.3e-80 304.7 566 38.2
AUR62032199 Chenopodium quinoa HOM05D007228 ORTHO05D009099 8.2e-80 302.0 370 47.3
SEGI_11491 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 3.9e-74 283.1 389 41.9
Sc04g0000080 Simmondsia chinensis HOM05D007228 ORTHO05D009099 1.4e-68 264.6 270 50.0
Sc04g0000120 Simmondsia chinensis HOM05D007228 ORTHO05D009099 1.4e-68 264.6 270 50.0
SMO119G0281 Selaginella moellendorffii HOM05D007228 ORTHO05D009099 2.1e-51 207.6 426 32.2
unitig_747.g21316 Utricularia gibba HOM05D002839 ORTHO05D003349 2.6e-49 200.7 311 38.3
Psat0s3642g0120 Pisum sativum HOM05D007228 ORTHO05D009099 4.1e-47 193.4 239 46.0
TPR.G21492 Trifolium pratense HOM05D007228 ORTHO05D009099 2.1e-43 181.0 206 48.1
Lalb_Chr12g0202651 Lupinus albus HOM05D007228 ORTHO05D009099 2.0e-41 174.5 159 52.8
PGSC0003DMG400014227 Solanum tuberosum HOM05D007228 ORTHO05D009099 4.1e-39 166.8 142 57.0
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 7.5e-33 146.0 166 45.2
Psat3g128520 Pisum sativum HOM05D007228 ORTHO05D009099 1.3e-32 145.2 241 36.9
HPP92_021579 Vanilla planifolia HOM05D007228 ORTHO05D009099 1.2e-30 138.7 139 50.4
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.7e-29 134.8 121 52.9
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 2.5e-28 131.0 119 52.1
AagrBONN_evm.TU.Sc2ySwM_344.3780 Anthoceros agrestis HOM05D007228 ORTHO05D009099 2.1e-27 127.9 193 35.8
AUR62009120 Chenopodium quinoa HOM05D007228 ORTHO05D009099 3.7e-24 117.1 415 28.4
CDE06G2808 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 1.4e-23 115.2 114 43.9
AL468U10020 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 3.0e-21 107.5 85 57.6
HPP92_021580 Vanilla planifolia HOM05D007228 ORTHO05D009099 4.4e-17 93.6 154 38.3
CDE02G0692 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 2.4e-15 87.8 96 43.8
AL6G43550 Arabidopsis lyrata HOM05D001764 ORTHO05D079172 4.6e-06 57.0 94 34.0


User provided reference genes

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