Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 2.7e-160 568.5 270 100.0
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 2.7e-152 542.0 270 95.2
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.0e-148 530.0 270 92.6
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.2e-147 526.6 270 91.9
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 4.4e-147 524.6 267 91.4
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 1.9e-145 519.2 271 91.1
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 9.2e-145 516.9 270 90.7
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 6.0e-144 514.2 260 92.7
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 2.3e-143 512.3 260 89.6
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 1.1e-140 503.4 262 90.1
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 2.3e-140 502.3 257 90.7
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 4.0e-140 501.5 268 86.2
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 1.5e-139 499.6 270 85.6
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.7e-138 496.1 271 86.3
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 2.2e-138 495.7 270 84.4
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 2.9e-138 495.4 270 85.9
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 4.9e-138 494.6 253 89.3
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 6.4e-138 494.2 270 86.7
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 1.9e-137 492.7 256 89.1
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 1.9e-137 492.7 270 86.7
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 4.1e-137 491.5 262 84.4
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 5.4e-137 491.1 270 85.9
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 5.4e-137 491.1 263 83.7
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 5.4e-137 491.1 264 83.7
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.2e-136 490.0 254 88.2
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 1.3e-135 486.5 260 87.3
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 2.3e-135 485.7 254 88.2
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 6.6e-135 484.2 260 84.2
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 1.1e-134 483.4 260 84.6
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 1.5e-134 483.0 269 83.6
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 1.5e-134 483.0 269 82.9
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 2.5e-134 482.3 270 84.8
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 7.3e-134 480.7 262 82.4
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 7.3e-134 480.7 267 80.9
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 7.3e-134 480.7 267 80.9
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 9.5e-134 480.3 262 85.5
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 1.2e-133 479.9 270 80.0
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 1.6e-133 479.6 265 81.1
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 2.1e-133 479.2 260 85.0
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 2.1e-133 479.2 262 85.1
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 3.6e-133 478.4 260 85.0
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 3.6e-133 478.4 270 82.6
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 6.2e-133 477.6 270 83.0
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 8.1e-133 477.2 269 83.6
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 8.1e-133 477.2 268 83.2
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 1.1e-132 476.9 260 84.6
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 1.1e-132 476.9 260 84.6
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 1.4e-132 476.5 253 86.6
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 2.3e-132 475.7 272 81.2
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 2.3e-132 475.7 259 87.6
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 3.1e-132 475.3 244 91.8
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 6.8e-132 474.2 272 80.9
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 1.5e-131 473.0 272 80.5
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 2.0e-131 472.6 271 80.4
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 2.0e-131 472.6 280 81.4
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 2.0e-131 472.6 280 81.4
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 9.9e-131 470.3 272 80.1
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 9.9e-131 470.3 280 81.1
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 1.7e-130 469.5 267 82.4
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 2.2e-130 469.2 280 80.7
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 2.2e-130 469.2 267 83.1
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 4.9e-130 468.0 257 84.8
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 8.3e-130 467.2 267 82.8
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 1.1e-129 466.8 272 79.4
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 1.4e-129 466.5 275 81.5
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 2.4e-129 465.7 267 81.6
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 4.1e-129 464.9 269 80.3
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 4.1e-129 464.9 265 81.9
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 5.4e-129 464.5 260 79.2
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 9.2e-129 463.8 267 80.1
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.6e-128 463.0 270 79.6
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 3.5e-128 461.8 267 79.8
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.3e-127 459.1 264 81.1
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 1.5e-126 456.4 267 80.5
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.5e-126 456.4 271 79.3
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 1.9e-126 456.1 270 78.9
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 2.5e-126 455.7 262 81.7
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 5.6e-126 454.5 269 78.4
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 5.6e-126 454.5 270 78.5
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 2.8e-125 452.2 258 80.6
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 1.1e-124 450.3 270 78.1
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 1.4e-124 449.9 263 78.7
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 2.4e-124 449.1 270 77.4
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 6.8e-124 447.6 278 74.8
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 8.9e-124 447.2 256 79.3
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 2.0e-123 446.0 272 76.5
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 5.8e-123 444.5 265 75.8
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 7.6e-123 444.1 266 77.4
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 1.3e-122 443.4 250 81.2
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 1.7e-122 443.0 269 76.2
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 3.8e-122 441.8 269 79.9
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 8.4e-122 440.7 259 78.0
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 1.9e-121 439.5 254 78.0
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 3.9e-119 431.8 285 70.2
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 5.1e-119 431.4 286 72.0
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 5.1e-119 431.4 242 81.4
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.9e-118 429.5 283 70.7
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 2.5e-118 429.1 262 75.2
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 2.5e-118 429.1 250 78.8
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 9.6e-118 427.2 294 69.7
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 1.6e-117 426.4 274 77.0
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 1.6e-117 426.4 273 74.0
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 3.6e-117 425.2 260 76.9
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 4.0e-116 421.8 267 74.5
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 8.4e-114 414.1 273 73.3
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 9.3e-113 410.6 231 78.4
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 2.1e-112 409.5 210 88.1
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 1.0e-111 407.1 294 69.0
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 2.8e-109 399.1 235 77.0
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 6.2e-109 397.9 220 81.4
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.8e-108 396.4 269 71.7
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 3.4e-107 392.1 231 74.0
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 6.4e-106 387.9 241 71.8
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 8.4e-106 387.5 233 70.8
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 1.4e-105 386.7 222 79.7
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 1.2e-104 383.6 262 71.4
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 3.3e-102 375.6 225 72.0
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 3.3e-102 375.6 218 73.9
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 9.0e-100 367.5 192 84.9
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 2.0e-99 366.3 222 69.8
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.9e-97 359.8 219 76.7
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.2e-96 357.1 302 58.9
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 1.2e-96 357.1 231 73.2
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 4.5e-91 338.6 332 52.7
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 1.7e-90 336.7 164 89.6
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 3.8e-90 335.5 281 61.9
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 8.4e-90 334.3 162 94.4
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 6.3e-85 318.2 181 81.2
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 1.1e-84 317.4 198 69.7
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 4.5e-83 312.0 215 60.5
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 2.9e-74 282.7 157 84.1
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 1.8e-68 263.5 163 76.1
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 1.6e-64 250.4 138 80.4
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 4.0e-63 245.7 213 60.6
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 2.6e-62 243.0 199 61.3
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 5.7e-54 215.3 125 77.6
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 5.4e-52 208.8 121 77.7
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 3.7e-37 159.5 105 76.2
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 4.6e-27 125.9 82 73.2
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 6.0e-27 125.6 72 80.6
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 7.8e-27 125.2 68 75.0
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 1.3e-26 124.4 81 71.6
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 9.5e-25 118.2 66 81.8
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 4.0e-23 112.8 65 70.8
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 1.1e-20 104.8 90 60.0
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 9.2e-20 101.7 61 82.0
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 1.3e-18 97.8 52 80.8
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 3.3e-17 93.2 60 83.3
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 1.6e-16 90.9 84 53.6
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 2.8e-16 90.1 86 59.3
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 9.9e-14 81.6 43 74.4
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 5.4e-12 75.9 60 61.7
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 9.2e-12 75.1 97 42.3
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 1.6e-11 74.3 52 65.4
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 6.6e-10 68.9 66 56.1
BolC3t14316H Brassica oleracea HOM05D001551 ORTHO05D042173 1.2e-06 58.2 49 51.0


User provided reference genes

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