Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 3.5e-36 154.5 78 100.0
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 1.6e-33 145.6 79 93.7
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 1.6e-33 145.6 79 93.7
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 1.4e-32 142.5 79 93.7
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 3.0e-32 141.4 78 91.0
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 3.4e-31 137.9 77 89.6
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 4.4e-31 137.5 75 90.7
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 4.4e-31 137.5 79 88.6
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 4.4e-31 137.5 79 88.6
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 9.8e-31 136.3 79 89.9
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 9.8e-31 136.3 79 88.6
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 2.2e-30 135.2 77 87.0
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 2.8e-30 134.8 79 88.6
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 3.7e-30 134.4 75 86.7
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 6.3e-30 133.7 78 84.6
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 8.3e-30 133.3 79 87.3
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 1.8e-29 132.1 75 86.7
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 1.8e-29 132.1 79 86.1
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 1.8e-29 132.1 74 86.5
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 2.4e-29 131.7 76 85.5
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 3.1e-29 131.3 79 83.5
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 5.4e-29 130.6 79 82.3
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 7.0e-29 130.2 79 79.7
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 2.0e-28 128.6 76 85.5
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 2.0e-28 128.6 79 82.3
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 2.0e-28 128.6 79 82.3
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 2.0e-28 128.6 79 82.3
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 2.7e-28 128.3 79 81.0
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 3.5e-28 127.9 79 79.7
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 4.5e-28 127.5 75 84.0
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 4.5e-28 127.5 79 82.3
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 5.9e-28 127.1 79 82.3
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 5.9e-28 127.1 79 78.5
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 7.7e-28 126.7 79 78.5
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 1.0e-27 126.3 79 78.5
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.3e-27 125.9 79 78.5
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 1.7e-27 125.6 79 79.7
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 1.7e-27 125.6 79 79.7
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.7e-27 125.6 79 82.3
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 2.2e-27 125.2 79 77.2
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 2.2e-27 125.2 80 78.8
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 2.2e-27 125.2 79 78.5
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 2.9e-27 124.8 76 80.3
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 2.9e-27 124.8 79 75.9
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 2.9e-27 124.8 77 80.5
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 3.8e-27 124.4 79 78.5
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 6.5e-27 123.6 77 76.6
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 6.5e-27 123.6 75 78.7
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 8.5e-27 123.2 79 78.5
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 8.5e-27 123.2 79 77.2
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 8.5e-27 123.2 74 79.7
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 8.5e-27 123.2 74 79.7
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 1.5e-26 122.5 79 78.5
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 1.5e-26 122.5 79 78.5
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 1.5e-26 122.5 75 74.7
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.5e-26 122.5 80 77.5
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 1.9e-26 122.1 72 81.9
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.9e-26 122.1 79 77.2
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 3.2e-26 121.3 75 73.3
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 4.2e-26 120.9 73 79.5
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 4.2e-26 120.9 80 76.2
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 5.5e-26 120.6 79 74.7
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 5.5e-26 120.6 75 78.7
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 7.2e-26 120.2 79 74.7
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 7.2e-26 120.2 79 77.2
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 9.4e-26 119.8 74 75.7
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.2e-25 119.4 75 72.0
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 1.2e-25 119.4 75 76.0
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 1.2e-25 119.4 75 76.0
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 1.2e-25 119.4 74 73.0
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 1.2e-25 119.4 76 77.6
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 1.6e-25 119.0 74 75.7
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 1.6e-25 119.0 74 75.7
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 3.6e-25 117.9 65 89.2
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 3.6e-25 117.9 74 74.3
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 4.7e-25 117.5 61 93.4
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 8.0e-25 116.7 79 69.6
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 1.0e-24 116.3 73 75.3
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 1.0e-24 116.3 71 76.1
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.4e-24 115.9 61 91.8
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 1.4e-24 115.9 74 73.0
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 1.8e-24 115.5 79 68.4
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.8e-24 115.5 79 68.4
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 1.8e-24 115.5 74 71.6
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 1.8e-24 115.5 76 75.0
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.8e-24 115.5 101 64.4
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 2.3e-24 115.2 78 71.8
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 3.0e-24 114.8 79 70.9
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 4.0e-24 114.4 72 80.6
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 4.0e-24 114.4 63 90.5
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 5.2e-24 114.0 72 72.2
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 6.8e-24 113.6 69 75.4
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 6.8e-24 113.6 63 87.3
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 8.8e-24 113.2 64 84.4
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 1.5e-23 112.5 76 73.7
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 2.0e-23 112.1 79 65.8
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 2.0e-23 112.1 78 70.5
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 2.0e-23 112.1 78 70.5
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 2.0e-23 112.1 73 71.2
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 2.6e-23 111.7 77 71.4
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 1.7e-22 109.0 78 67.9
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 2.8e-22 108.2 86 62.8
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 3.7e-22 107.8 76 69.7
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 3.7e-22 107.8 72 75.0
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 6.3e-22 107.1 79 65.8
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 1.1e-21 106.3 79 64.6
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 1.4e-21 105.9 79 64.6
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 1.4e-21 105.9 79 64.6
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 1.4e-21 105.9 79 64.6
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 1.4e-21 105.9 79 64.6
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 1.8e-21 105.5 70 65.7
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 2.4e-21 105.1 54 88.9
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 2.4e-21 105.1 65 78.5
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 3.1e-21 104.8 74 63.5
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 4.1e-21 104.4 74 63.5
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 4.1e-21 104.4 59 83.1
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 4.1e-21 104.4 74 63.5
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 5.4e-21 104.0 75 68.0
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 5.4e-21 104.0 75 68.0
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 5.4e-21 104.0 75 68.0
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 5.4e-21 104.0 75 68.0
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 5.4e-21 104.0 57 87.7
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 1.2e-20 102.8 73 65.8
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 7.7e-20 100.1 69 66.7
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 1.0e-19 99.8 66 66.7
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 2.9e-19 98.2 72 61.1
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 6.6e-19 97.1 66 68.2
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 1.9e-18 95.5 75 57.3
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 2.5e-18 95.1 57 75.4
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 3.3e-18 94.7 65 66.2
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 4.2e-18 94.4 65 66.2
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 7.2e-18 93.6 53 75.5
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 1.2e-17 92.8 76 55.3
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 1.4e-16 89.4 55 72.7
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 4.0e-16 87.8 76 55.3
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 4.0e-16 87.8 59 64.4
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 5.2e-16 87.4 76 55.3
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 8.9e-16 86.7 63 60.3
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 8.3e-14 80.1 74 50.0
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 1.4e-13 79.3 74 48.6
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 1.8e-13 79.0 50 74.0
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 2.9e-11 71.6 64 56.2
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 1.9e-10 68.9 64 53.1
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.2e-09 66.2 64 53.1
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 2.6e-07 58.5 77 36.4
FAN18G4143 Fragaria x ananassa HOM05D005222 ORTHO05D006230 2.2e-06 55.5 75 46.7


User provided reference genes

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