Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G130400 Theobroma cacao HOM05D007115 ORTHO05D008923 1.1e-122 443.4 228 100.0
Duzib205G1497 Durio zibethinus HOM05D007115 ORTHO05D008923 2.6e-100 369.0 229 83.0
Haze_07151 Corylus avellana HOM05D007115 ORTHO05D008923 1.5e-84 316.6 230 72.6
Atru.chr6.1807 Acer truncatum HOM05D007115 ORTHO05D008923 4.5e-84 315.1 215 74.4
CiPaw.12G043900 Carya illinoinensis HOM05D007115 ORTHO05D008923 6.5e-83 311.2 230 72.6
Cpa.g.sc13.101 Carica papaya HOM05D007115 ORTHO05D008923 1.4e-82 310.1 226 69.9
Potri.015G097700 Populus trichocarpa HOM05D007115 ORTHO05D008923 1.4e-82 310.1 197 76.1
Sabra15G0118300 Salix brachista HOM05D007115 ORTHO05D008923 1.4e-82 310.1 196 76.5
Manes.14G050500 Manihot esculenta HOM05D007115 ORTHO05D008923 1.9e-82 309.7 224 71.9
Cfa018785 Carpinus fangiana HOM05D007115 ORTHO05D008923 2.7e-81 305.8 230 71.3
Ciclev10032623m.g Citrus clementina HOM05D007115 ORTHO05D008923 1.1e-79 300.4 210 75.7
Gohir.D11G039800 Gossypium hirsutum HOM05D007115 ORTHO05D008923 1.1e-79 300.4 217 73.3
Gohir.A11G036350 Gossypium hirsutum HOM05D007115 ORTHO05D008923 2.5e-79 299.3 178 85.4
Hma1.2p1_0014F.1_g009320 Hydrangea macrophylla HOM05D007115 ORTHO05D008923 3.3e-79 298.9 228 69.7
Dinv23157 Davidia involucrata HOM05D007115 ORTHO05D008923 1.6e-78 296.6 196 75.5
Gorai.007G042800 Gossypium raimondii HOM05D007115 ORTHO05D008923 2.8e-78 295.8 220 73.2
QL10p002688 Quercus lobata HOM05D007115 ORTHO05D008923 1.8e-77 293.1 282 59.9
TWI39G0929 Tripterygium wilfordii HOM05D007115 ORTHO05D008923 2.4e-77 292.7 234 67.1
Lj5A95G76 Lonicera japonica HOM05D007115 ORTHO05D008923 1.5e-76 290.0 194 72.7
Actinidia25565 Actinidia chinensis HOM05D007115 ORTHO05D008923 3.8e-75 285.4 216 67.6
Hund02448 Selenicereus undatus HOM05D007115 ORTHO05D008923 3.8e-75 285.4 198 69.7
GSVIVG01008566001 Vitis vinifera HOM05D007115 ORTHO05D008923 3.8e-75 285.4 199 71.9
Sc04g0000560 Simmondsia chinensis HOM05D007115 ORTHO05D008923 8.5e-75 284.3 226 65.9
CANSAT80G2203 Cannabis sativa HOM05D007115 ORTHO05D008923 5.5e-74 281.6 215 65.6
Rhsim08G0191000 Rhododendron simsii HOM05D007115 ORTHO05D008923 9.4e-74 280.8 215 67.0
ClCG03G003830 Citrullus lanatus HOM05D007115 ORTHO05D008923 4.6e-73 278.5 225 64.9
Prupe.5G150000 Prunus persica HOM05D007115 ORTHO05D008923 7.9e-73 277.7 225 62.7
RcHm_v2.0_Chr7g0190021 Rosa chinensis HOM05D007115 ORTHO05D008923 1.0e-72 277.3 223 63.7
MELO3C002367.2 Cucumis melo HOM05D007115 ORTHO05D008923 3.0e-72 275.8 232 63.8
FvH4_5g08420 Fragaria vesca HOM05D007115 ORTHO05D008923 3.0e-72 275.8 223 62.8
ATR0790G002 Amborella trichopoda HOM05D007115 ORTHO05D008923 5.1e-72 275.0 188 69.7
Oeu004998.1 Olea europaea HOM05D007115 ORTHO05D008923 5.1e-72 275.0 225 64.0
Glyma.04G196500 Glycine max HOM05D007115 ORTHO05D008923 6.7e-72 274.6 199 69.3
Medtr3g099140 Medicago truncatula HOM05D007115 ORTHO05D008923 6.7e-72 274.6 195 70.3
FAN04G1902 Fragaria x ananassa HOM05D007115 ORTHO05D008923 1.1e-71 273.9 217 64.1
FAN13G1038 Fragaria x ananassa HOM05D007115 ORTHO05D008923 1.1e-71 273.9 223 62.3
Lsat_1_v5_gn_1_33120 Lactuca sativa HOM05D007115 ORTHO05D008923 1.1e-71 273.9 232 64.7
MD06G1140800 Malus domestica HOM05D007115 ORTHO05D008923 1.5e-71 273.5 221 64.3
Glyma.06G169300 Glycine max HOM05D007115 ORTHO05D008923 2.0e-71 273.1 229 62.9
CsaV3_1G009730 Cucumis sativus L. HOM05D007115 ORTHO05D008923 2.5e-71 272.7 231 63.2
Ca_16052_v3 Cicer arietinum L. HOM05D007115 ORTHO05D008923 7.4e-71 271.2 227 64.8
FAN08G1896 Fragaria x ananassa HOM05D007115 ORTHO05D008923 7.4e-71 271.2 223 61.9
Aqoxy5G03328 Aquilegia oxysepala HOM05D007115 ORTHO05D008923 9.7e-71 270.8 223 62.8
vmacro19121 Vaccinium macrocarpon HOM05D007115 ORTHO05D008923 9.7e-71 270.8 220 65.0
VMungo1309G2111 Vigna mungo HOM05D007115 ORTHO05D008923 1.3e-70 270.4 210 66.2
Lj1g0010129 Lotus japonicus HOM05D007115 ORTHO05D008923 2.8e-70 269.2 209 67.0
Nitab4.5_0001311g0160 Nicotiana tabacum HOM05D007115 ORTHO05D008923 2.8e-70 269.2 231 61.0
CSS0028949 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 4.8e-70 268.5 191 73.8
FAN18G3505 Fragaria x ananassa HOM05D007115 ORTHO05D008923 4.8e-70 268.5 223 61.9
HanXRQChr02g0034681 Helianthus annuus HOM05D007115 ORTHO05D008923 4.8e-70 268.5 234 64.1
Phvul.009G165800 Phaseolus vulgaris HOM05D007115 ORTHO05D008923 4.8e-70 268.5 201 68.7
Nitab4.5_0000624g0110 Nicotiana tabacum HOM05D007115 ORTHO05D008923 8.2e-70 267.7 230 61.3
CSS0028892 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 1.4e-69 266.9 191 72.8
THA.LOC104811583 Tarenaya hassleriana HOM05D007115 ORTHO05D008923 1.4e-69 266.9 230 60.4
PGR083G2674 Punica granatum HOM05D007115 ORTHO05D008923 6.9e-69 264.6 173 75.7
CDE02G1164 Ceratophyllum demersum HOM05D007115 ORTHO05D008923 2.0e-68 263.1 222 63.5
TPR.G14207 Trifolium pratense HOM05D007115 ORTHO05D008923 3.4e-68 262.3 228 64.5
PGSC0003DMG400015264 Solanum tuberosum HOM05D007115 ORTHO05D008923 5.9e-68 261.5 229 61.6
MSTRG.11273 Avicennia marina HOM05D007115 ORTHO05D008923 1.7e-67 260.0 187 68.4
AUR62034838 Chenopodium quinoa HOM05D007115 ORTHO05D008923 8.5e-67 257.7 171 73.1
DCAR_007496 Daucus carota HOM05D007115 ORTHO05D008923 8.5e-67 257.7 219 61.6
EL10Ac5g11401 Beta vulgaris HOM05D007115 ORTHO05D008923 1.1e-66 257.3 196 66.3
Sopen03g029960 Solanum pennellii HOM05D007115 ORTHO05D008923 1.1e-66 257.3 228 60.1
Solyc03g019660.4 Solanum lycopersicum HOM05D007115 ORTHO05D008923 1.4e-66 256.9 190 67.9
Lalb_Chr11g0069511 Lupinus albus HOM05D007115 ORTHO05D008923 1.9e-66 256.5 210 62.4
CAN.G1611.7 Capsicum annuum HOM05D007115 ORTHO05D008923 3.2e-66 255.8 220 59.1
Eucgr.B00101 Eucalyptus grandis HOM05D007115 ORTHO05D008923 5.5e-66 255.0 191 68.6
Peaxi162Scf00089g00121 Petunia axillaris HOM05D007115 ORTHO05D008923 7.2e-66 254.6 230 60.4
Carub.0007s1613 Capsella rubella HOM05D007115 ORTHO05D008923 2.3e-64 249.6 212 61.3
unitig_8.g3030 Utricularia gibba HOM05D007115 ORTHO05D008923 1.5e-63 246.9 240 53.8
AL7G28270 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 3.3e-63 245.7 194 64.4
Aa31LG7G10860 Aethionema arabicum HOM05D007115 ORTHO05D008923 1.3e-62 243.8 237 56.1
TAR622G0416 Trochodendron aralioides HOM05D007115 ORTHO05D008923 2.8e-62 242.7 136 84.6
ECA247G2755 Erigeron canadensis HOM05D001512 ORTHO05D001574 3.7e-62 242.3 168 66.7
AT4G24930 Arabidopsis thaliana HOM05D007115 ORTHO05D008923 6.3e-62 241.5 222 58.6
CARHR232330 Cardamine hirsuta HOM05D007115 ORTHO05D008923 1.8e-61 240.0 202 62.4
Cc04_g09720 Coffea canephora HOM05D007115 ORTHO05D008923 1.8e-61 240.0 222 58.1
PSO017G0512 Papaver somniferum HOM05D007115 ORTHO05D008923 2.4e-61 239.6 208 61.1
BcaNung06011 Brassica carinata HOM05D007115 ORTHO05D008923 4.1e-61 238.8 190 63.2
Migut.I00540 Erythranthe guttata HOM05D007115 ORTHO05D008923 5.3e-61 238.4 243 54.7
Thhalv10026135m.g Eutrema salsugineum HOM05D007115 ORTHO05D008923 9.1e-61 237.7 190 63.7
BolC1t01950H Brassica oleracea HOM05D007115 ORTHO05D008923 1.0e-59 234.2 214 58.4
Sp7g22910 Schrenkiella parvula HOM05D007115 ORTHO05D008923 2.9e-59 232.6 241 54.4
A01p16220 Brassica napus HOM05D007115 ORTHO05D008923 8.5e-59 231.1 191 61.8
BraA01t01558Z Brassica rapa HOM05D007115 ORTHO05D008923 8.5e-59 231.1 191 61.8
Nn4g22293 Nelumbo nucifera HOM05D007115 ORTHO05D008923 1.5e-58 230.3 137 79.6
HPP92_023120 Vanilla planifolia HOM05D007115 ORTHO05D008923 1.2e-57 227.3 186 61.3
SalBow5G3672 Salvia bowleyana HOM05D007115 ORTHO05D008923 1.4e-56 223.8 264 52.7
C01p20210 Brassica napus HOM05D007115 ORTHO05D008923 1.1e-55 220.7 194 59.3
SGA_v2.0_scaffold258G45802 Striga asiatica HOM05D007115 ORTHO05D008923 2.0e-55 219.9 275 48.0
arahy.Tifrunner.gnm1.ann1.YTW6SU Arachis hypogaea HOM05D007115 ORTHO05D008923 3.4e-47 192.6 187 57.8
COL.COLO4_28141 Corchorus olitorius HOM05D007115 ORTHO05D008923 3.5e-44 182.6 99 90.9
Zm00001eb334110 Zea mays HOM05D007115 ORTHO05D008923 4.7e-41 172.2 161 56.5
Pp3c6_23090 Physcomitrium patens HOM05D007115 ORTHO05D008923 1.5e-39 167.2 160 50.6
AUR62029602 Chenopodium quinoa HOM05D007115 ORTHO05D008923 6.3e-38 161.8 99 76.8
Psat5g051920 Pisum sativum HOM05D007115 ORTHO05D008923 3.1e-37 159.5 124 65.3
Os01g0102300 Oryza sativa ssp. japonica HOM05D007115 ORTHO05D008923 1.6e-36 157.1 173 48.6
MBI11_g41395_MAGBIO Magnolia biondii HOM05D007115 ORTHO05D008923 8.6e-35 151.4 101 72.3
arahy.Tifrunner.gnm1.ann1.BUY811 Arachis hypogaea HOM05D007115 ORTHO05D008923 2.5e-34 149.8 115 69.6
SMO356G0600 Selaginella moellendorffii HOM05D007115 ORTHO05D008923 6.1e-33 145.2 152 48.0
Sed0002696 Sechium edule HOM05D007115 ORTHO05D008923 4.3e-26 122.5 124 56.5
SEGI_00544 Sequoiadendron giganteum HOM05D007115 ORTHO05D008923 2.3e-24 116.7 112 52.7
ATR0405G001 Amborella trichopoda HOM05D007115 ORTHO05D008923 6.4e-22 108.6 63 79.4
Actinidia18342 Actinidia chinensis HOM05D007115 ORTHO05D008923 3.2e-21 106.3 62 74.2
Ah.02g114850 Amaranthus hybridus HOM05D007115 ORTHO05D008923 5.6e-18 95.5 143 43.4
FAN18G1815 Fragaria x ananassa HOM05D007115 ORTHO05D008923 3.7e-14 82.8 61 63.9
Sabra12G0072200 Salix brachista HOM05D007115 ORTHO05D008923 4.9e-14 82.4 61 68.9
Cre17.g714900 Chlamydomonas reinhardtii HOM05D007115 ORTHO05D008923 4.1e-13 79.3 177 29.4
FAN13G2062 Fragaria x ananassa HOM05D007115 ORTHO05D008923 9.2e-13 78.2 63 61.9
Actinidia18341 Actinidia chinensis HOM05D000804 ORTHO05D000989 2.7e-12 76.6 110 48.2
AL6G46780 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 1.7e-11 73.9 100 46.0
MCO03G440 Micromonas commoda HOM05D007115 ORTHO05D008923 8.1e-09 65.1 245 26.5
PRCOL_00005130 Prasinoderma coloniale HOM05D003314 ORTHO05D004164 1.8e-08 63.9 111 34.2
FAN04G0070 Fragaria x ananassa HOM05D007115 ORTHO05D008923 1.2e-07 61.2 55 54.5


User provided reference genes

Program Settings