Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G129500 Theobroma cacao HOM05D005804 ORTHO05D006849 1.4e-259 899.0 447 100.0
Duzib205G0351 Durio zibethinus HOM05D005804 ORTHO05D006849 5.9e-197 691.0 460 77.6
Gorai.001G058800 Gossypium raimondii HOM05D005804 ORTHO05D006849 6.5e-188 661.0 461 74.6
COL.COLO4_28132 Corchorus olitorius HOM05D005804 ORTHO05D006849 4.7e-186 654.8 453 75.9
QL10p002869 Quercus lobata HOM05D005804 ORTHO05D006849 9.5e-139 497.7 425 60.5
Cfa018793 Carpinus fangiana HOM05D005804 ORTHO05D006849 3.1e-137 492.7 475 56.2
CiPaw.11G006800 Carya illinoinensis HOM05D005804 ORTHO05D006849 1.3e-135 487.3 443 59.6
Prupe.5G150700 Prunus persica HOM05D005804 ORTHO05D006849 3.8e-135 485.7 435 60.5
Haze_07141 Corylus avellana HOM05D005804 ORTHO05D006849 1.1e-134 484.2 447 57.9
Cpa.g.sc13.112 Carica papaya HOM05D005804 ORTHO05D006849 4.0e-129 465.7 453 57.2
GSVIVG01008547001 Vitis vinifera HOM05D005804 ORTHO05D006849 2.6e-128 463.0 476 56.1
MD14G1156600 Malus domestica HOM05D005804 ORTHO05D006849 2.7e-125 453.0 434 56.7
Psat5g051400 Pisum sativum HOM05D005804 ORTHO05D006849 8.7e-124 448.0 424 55.7
TWI23G1188 Tripterygium wilfordii HOM05D005804 ORTHO05D006849 1.1e-123 447.6 446 54.7
Dinv23150 Davidia involucrata HOM05D005804 ORTHO05D006849 1.5e-123 447.2 428 59.1
Lalb_Chr11g0069551 Lupinus albus HOM05D005804 ORTHO05D006849 4.3e-123 445.7 445 54.8
Hma1.2p1_0014F.1_g009390 Hydrangea macrophylla HOM05D005804 ORTHO05D006849 1.3e-122 444.1 423 56.3
TPR.G14211 Trifolium pratense HOM05D005804 ORTHO05D006849 1.6e-122 443.7 431 55.2
Medtr3g099220 Medicago truncatula HOM05D005804 ORTHO05D006849 8.1e-122 441.4 425 55.8
Ciclev10031832m.g Citrus clementina HOM05D005804 ORTHO05D006849 1.4e-121 440.7 418 55.5
FAN13G2030 Fragaria x ananassa HOM05D005804 ORTHO05D006849 7.6e-120 434.9 435 55.6
Medtr2g045240 Medicago truncatula HOM05D005804 ORTHO05D006849 4.9e-119 432.2 420 55.2
Medtr2g045245 Medicago truncatula HOM05D005804 ORTHO05D006849 4.9e-119 432.2 420 55.2
Atru.chr6.1796 Acer truncatum HOM05D005804 ORTHO05D006849 8.4e-119 431.4 417 55.9
Lj1g0008882 Lotus japonicus HOM05D005804 ORTHO05D006849 2.4e-118 429.9 429 56.2
CsaV3_1G009670 Cucumis sativus L. HOM05D005804 ORTHO05D006849 3.2e-118 429.5 433 53.1
FAN08G1998 Fragaria x ananassa HOM05D005804 ORTHO05D006849 6.0e-117 425.2 454 53.3
Ca_16047_v3 Cicer arietinum L. HOM05D005804 ORTHO05D006849 5.1e-116 422.2 425 53.9
FvH4_5g08360 Fragaria vesca HOM05D005804 ORTHO05D006849 6.7e-116 421.8 436 54.6
FAN04G2797 Fragaria x ananassa HOM05D005804 ORTHO05D006849 2.5e-115 419.9 464 52.6
Atru.chr12.1219 Acer truncatum HOM05D005804 ORTHO05D006849 3.3e-115 419.5 414 54.8
arahy.Tifrunner.gnm1.ann1.PR501J Arachis hypogaea HOM05D005804 ORTHO05D006849 4.3e-115 419.1 419 53.9
THA.LOC104825017 Tarenaya hassleriana HOM05D005804 ORTHO05D006849 7.4e-115 418.3 440 50.9
ClCG03G003790 Citrullus lanatus HOM05D005804 ORTHO05D006849 2.1e-114 416.8 449 52.1
FAN18G4115 Fragaria x ananassa HOM05D005804 ORTHO05D006849 8.1e-114 414.8 426 54.5
arahy.Tifrunner.gnm1.ann1.Y2QIS7 Arachis hypogaea HOM05D005804 ORTHO05D006849 1.8e-113 413.7 418 54.3
arahy.Tifrunner.gnm1.ann1.489AYV Arachis hypogaea HOM05D005804 ORTHO05D006849 4.0e-113 412.5 426 53.1
Rhsim12G0175100 Rhododendron simsii HOM05D005804 ORTHO05D006849 1.1e-110 404.4 480 49.4
TAR629G0711 Trochodendron aralioides HOM05D005804 ORTHO05D006849 3.2e-110 402.9 430 53.5
Aqoxy5G03360 Aquilegia oxysepala HOM05D005804 ORTHO05D006849 1.8e-108 397.1 456 50.4
CANSAT80G2783 Cannabis sativa HOM05D005804 ORTHO05D006849 3.0e-108 396.4 424 51.9
arahy.Tifrunner.gnm1.ann1.I073XK Arachis hypogaea HOM05D005804 ORTHO05D006849 1.3e-106 391.0 417 51.1
MELO3C002363.2 Cucumis melo HOM05D005804 ORTHO05D006849 1.1e-105 387.9 433 50.6
DCAR_007491 Daucus carota HOM05D005804 ORTHO05D006849 2.0e-104 383.6 430 49.8
AL7G28300 Arabidopsis lyrata HOM05D005804 ORTHO05D006849 3.4e-104 382.9 432 48.6
Oeu058729.2 Olea europaea HOM05D005804 ORTHO05D006849 7.6e-104 381.7 464 47.4
MD06G1141400 Malus domestica HOM05D005804 ORTHO05D006849 1.7e-103 380.6 377 54.6
Sc22g0003840 Simmondsia chinensis HOM05D005804 ORTHO05D006849 3.8e-103 379.4 431 49.4
Sp7g22880 Schrenkiella parvula HOM05D005804 ORTHO05D006849 8.4e-103 378.3 424 48.1
PSO478G1623 Papaver somniferum HOM05D005804 ORTHO05D006849 1.1e-102 377.9 442 50.7
AT4G24900 Arabidopsis thaliana HOM05D005804 ORTHO05D006849 3.2e-102 376.3 436 47.9
Cc04_g08810 Coffea canephora HOM05D005804 ORTHO05D006849 2.1e-101 373.6 435 50.3
HanXRQChr13g0408711 Helianthus annuus HOM05D005804 ORTHO05D006849 4.6e-101 372.5 415 51.3
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 4.6e-101 372.5 432 51.4
VMungo1309G0122 Vigna mungo HOM05D005804 ORTHO05D006849 1.0e-100 371.3 420 50.0
Peaxi162Scf00171g00421 Petunia axillaris HOM05D005804 ORTHO05D006849 2.3e-100 370.2 431 48.5
Hund02443 Selenicereus undatus HOM05D005804 ORTHO05D006849 5.1e-100 369.0 432 47.9
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 7.4e-99 365.2 413 49.2
Sopen03g029080 Solanum pennellii HOM05D005804 ORTHO05D006849 1.3e-98 364.4 419 48.7
Solyc03g098330.2 Solanum lycopersicum HOM05D005804 ORTHO05D006849 2.2e-98 363.6 418 48.8
Migut.O00254 Erythranthe guttata HOM05D005804 ORTHO05D006849 3.7e-98 362.8 431 46.6
Nitab4.5_0010950g0010 Nicotiana tabacum HOM05D005804 ORTHO05D006849 6.3e-98 362.1 430 47.7
PGSC0003DMG400025629 Solanum tuberosum HOM05D005804 ORTHO05D006849 2.4e-97 360.1 415 48.2
Thhalv10025155m.g Eutrema salsugineum HOM05D005804 ORTHO05D006849 4.1e-97 359.4 423 46.8
Aa31LG7G10880 Aethionema arabicum HOM05D005804 ORTHO05D006849 7.7e-96 355.1 438 46.1
Lsat_1_v5_gn_1_33221 Lactuca sativa HOM05D005804 ORTHO05D006849 7.2e-94 348.6 450 46.7
Ah.02g114880 Amaranthus hybridus HOM05D005804 ORTHO05D006849 3.9e-92 342.8 427 46.4
Glyma.06G170000 Glycine max HOM05D005804 ORTHO05D006849 1.5e-91 340.9 409 48.2
Lj9A479T55 Lonicera japonica HOM05D005804 ORTHO05D006849 2.0e-91 340.5 404 49.0
SalBow8G2935 Salvia bowleyana HOM05D005804 ORTHO05D006849 3.7e-90 336.3 434 44.9
BcaNung06008 Brassica carinata HOM05D005804 ORTHO05D006849 2.4e-89 333.6 450 43.6
SGA_v2.0_scaffold164G38120 Striga asiatica HOM05D005804 ORTHO05D006849 9.1e-89 331.6 458 41.3
BraA01t01555Z Brassica rapa HOM05D005804 ORTHO05D006849 5.0e-87 325.9 440 42.7
SHI10578 Sapria himalayana HOM05D005804 ORTHO05D006849 3.2e-86 323.2 439 46.2
A01p16190 Brassica napus HOM05D005804 ORTHO05D006849 7.2e-86 322.0 440 42.5
MBI11_g05331_MAGBIO Magnolia biondii HOM05D005804 ORTHO05D006849 1.8e-84 317.4 412 45.6
BcaC09g52237 Brassica carinata HOM05D005804 ORTHO05D006849 5.1e-84 315.8 441 43.1
BolC1t01947H Brassica oleracea HOM05D005804 ORTHO05D006849 8.8e-84 315.1 442 42.3
EL10Ac5g11407 Beta vulgaris HOM05D005804 ORTHO05D006849 5.7e-83 312.4 529 38.9
C01p20180 Brassica napus HOM05D005804 ORTHO05D006849 1.1e-81 308.1 440 41.6
AUR62029607 Chenopodium quinoa HOM05D005804 ORTHO05D006849 2.5e-78 297.0 419 42.2
Manes.14G051101 Manihot esculenta HOM05D005804 ORTHO05D006849 4.7e-77 292.7 250 59.6
Gohir.A07G051132 Gossypium hirsutum HOM05D005804 ORTHO05D006849 2.3e-76 290.4 201 71.6
HPP92_013611 Vanilla planifolia HOM05D005804 ORTHO05D006849 4.4e-75 286.2 430 40.5
Sed0001636 Sechium edule HOM05D005804 ORTHO05D006849 3.7e-74 283.1 433 43.0
Gohir.D07G055532 Gossypium hirsutum HOM05D005804 ORTHO05D006849 8.2e-74 282.0 201 70.1
Potri.012G098000 Populus trichocarpa HOM05D005804 ORTHO05D006849 9.1e-73 278.5 261 53.3
Actinidia08874 Actinidia chinensis HOM05D005804 ORTHO05D006849 5.5e-70 269.2 282 52.1
unitig_26.g9610 Utricularia gibba HOM05D005804 ORTHO05D006849 1.0e-68 265.0 458 38.0
RcHm_v2.0_Chr7g0190091 Rosa chinensis HOM05D005804 ORTHO05D006849 4.0e-68 263.1 243 56.0
Gohir.D07G055466 Gossypium hirsutum HOM05D005804 ORTHO05D006849 5.2e-68 262.7 158 84.8
CSS0001147 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 6.8e-68 262.3 213 60.6
Gohir.A07G051066 Gossypium hirsutum HOM05D005804 ORTHO05D006849 1.5e-67 261.2 158 84.2
Eucgr.K02724 Eucalyptus grandis HOM05D005804 ORTHO05D006849 2.8e-66 256.9 324 49.1
SEGI_29979 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 4.2e-62 243.0 440 34.3
Zm00001eb102430 Zea mays HOM05D005804 ORTHO05D006849 2.6e-59 233.8 431 38.5
Nitab4.5_0001180g0250 Nicotiana tabacum HOM05D005804 ORTHO05D006849 7.0e-57 225.7 319 42.6
ECA247G1629 Erigeron canadensis HOM05D005804 ORTHO05D006849 5.0e-55 219.5 319 45.5
AagrBONN_evm.TU.Sc2ySwM_362.247 Anthoceros agrestis HOM05D005804 ORTHO05D006849 7.5e-51 205.7 419 32.5
Carub.0007s1617 Capsella rubella HOM05D005804 ORTHO05D006849 2.2e-50 204.1 151 60.3
Phvul.009G166301 Phaseolus vulgaris HOM05D005804 ORTHO05D006849 8.3e-50 202.2 180 55.0
Manes.14G051001 Manihot esculenta HOM05D005804 ORTHO05D006849 1.4e-49 201.4 159 71.1
Dinv11177 Davidia involucrata HOM05D005804 ORTHO05D006849 1.7e-47 194.5 267 47.9
Lalb_Chr08g0237201 Lupinus albus HOM05D005804 ORTHO05D006849 3.9e-47 193.4 159 64.8
Medtr2g045235 Medicago truncatula HOM05D005804 ORTHO05D006849 8.6e-47 192.2 155 62.6
CSS0012660 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 7.3e-46 189.1 154 65.6
Lalb_Chr08g0237181 Lupinus albus HOM05D005804 ORTHO05D006849 4.7e-45 186.4 131 63.4
RcHm_v2.0_Chr7g0190081 Rosa chinensis HOM05D005804 ORTHO05D006849 8.0e-45 185.7 161 62.1
SMO133G0032 Selaginella moellendorffii HOM05D005804 ORTHO05D006849 1.5e-43 181.4 408 32.1
Pp3c6_21480 Physcomitrium patens HOM05D005804 ORTHO05D006849 2.0e-43 181.0 477 29.1
AUR62034829 Chenopodium quinoa HOM05D005804 ORTHO05D006849 3.0e-39 167.2 204 42.6
AUR62034830 Chenopodium quinoa HOM05D005804 ORTHO05D006849 3.0e-39 167.2 204 42.6
ATR0178G019 Amborella trichopoda HOM05D005804 ORTHO05D006849 3.9e-39 166.8 127 57.5
Os09g0506900 Oryza sativa ssp. japonica HOM05D005804 ORTHO05D006849 2.5e-38 164.1 263 37.3
CARHR232300 Cardamine hirsuta HOM05D005804 ORTHO05D006849 3.6e-37 160.2 236 43.6
Potri.015G096700 Populus trichocarpa HOM05D005804 ORTHO05D006849 8.9e-36 155.6 243 43.6
Carub.0007s1616 Capsella rubella HOM05D005804 ORTHO05D006849 4.4e-35 153.3 155 56.1
SGA_v2.0_scaffold110G31174 Striga asiatica HOM05D052586 ORTHO05D006849 1.9e-33 147.9 113 52.2
CDE05G3468 Ceratophyllum demersum HOM05D005804 ORTHO05D006849 2.4e-33 147.5 295 35.6
vmacro16720 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 7.1e-33 146.0 135 57.0
vmacro16719 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 6.0e-32 142.9 173 46.8
SEGI_07598 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 5.1e-31 139.8 159 41.5
ATR0178G002 Amborella trichopoda HOM05D005804 ORTHO05D006849 1.4e-28 131.7 279 36.6
Dinv11175 Davidia involucrata HOM05D005804 ORTHO05D006849 3.1e-28 130.6 146 52.7
SEGI_03962 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 6.4e-26 122.9 324 30.2
Mapoly0096s0044 Marchantia polymorpha HOM05D005804 ORTHO05D006849 2.7e-24 117.5 128 37.5
Mapoly0096s0043 Marchantia polymorpha HOM05D005804 ORTHO05D006849 1.1e-22 112.1 169 42.6
SalBow2G1912 Salvia bowleyana HOM05D000011 ORTHO05D000018 8.1e-21 105.9 90 55.6
Zm00001eb317740 Zea mays HOM05D005804 ORTHO05D006849 5.2e-20 103.2 216 39.8
Oeu016044.4 Olea europaea HOM05D005804 ORTHO05D006849 2.6e-19 100.9 131 42.7
CSS0025658 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 1.7e-15 88.2 122 45.9
CiPaw.12G043400 Carya illinoinensis HOM05D005804 ORTHO05D006849 6.9e-12 76.3 68 63.2
CBR_g12751 Chara braunii HOM05D005804 ORTHO05D006849 2.2e-10 71.2 184 30.4
Actinidia36808 Actinidia chinensis HOM05D005804 ORTHO05D006849 6.4e-10 69.7 70 47.1
Sabra15G0117400 Salix brachista HOM05D005804 ORTHO05D006849 3.0e-07 60.8 108 36.1


User provided reference genes

Program Settings