Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G128900 Theobroma cacao HOM05D007169 ORTHO05D007243 8.5e-137 490.3 249 100.0
Duzib068G0521 Durio zibethinus HOM05D007169 ORTHO05D007243 8.8e-126 453.8 247 92.3
Gohir.D09G247400 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.6e-119 433.0 250 88.0
Gorai.006G271900 Gossypium raimondii HOM05D007169 ORTHO05D007243 1.6e-119 433.0 250 88.0
Gohir.A09G246900 Gossypium hirsutum HOM05D007169 ORTHO05D007243 3.6e-119 431.8 250 87.6
Gorai.004G276100 Gossypium raimondii HOM05D007169 ORTHO05D007243 1.5e-93 346.7 216 83.3
Cpa.g.sc13.118 Carica papaya HOM05D007169 ORTHO05D007243 3.7e-92 342.0 244 72.1
Manes.01G190300 Manihot esculenta HOM05D007169 ORTHO05D007243 7.8e-90 334.3 249 69.5
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 1.1e-86 323.9 268 64.9
Sabra15G0116800 Salix brachista HOM05D007169 ORTHO05D007243 2.3e-86 322.8 249 66.3
Potri.015G096000 Populus trichocarpa HOM05D007169 ORTHO05D007243 5.2e-86 321.6 246 65.9
Atru.chr9.1127 Acer truncatum HOM05D007169 ORTHO05D007243 1.2e-85 320.5 259 67.2
COL.COLO4_28120 Corchorus olitorius HOM05D007169 ORTHO05D007243 2.2e-84 316.2 249 70.3
TWI23G0849 Tripterygium wilfordii HOM05D007169 ORTHO05D007243 3.2e-83 312.4 254 65.7
Potri.012G097500 Populus trichocarpa HOM05D007169 ORTHO05D007243 7.1e-83 311.2 250 64.8
Phvul.009G166500 Phaseolus vulgaris HOM05D007169 ORTHO05D007243 2.7e-82 309.3 218 68.8
arahy.Tifrunner.gnm1.ann1.NVZ1RT Arachis hypogaea HOM05D007169 ORTHO05D007243 1.5e-80 303.5 215 69.3
arahy.Tifrunner.gnm1.ann1.ZT3MCZ Arachis hypogaea HOM05D007169 ORTHO05D007243 1.5e-80 303.5 215 69.3
CiPaw.12G042700 Carya illinoinensis HOM05D007169 ORTHO05D007243 3.3e-80 302.4 246 62.6
Glyma.06G170200 Glycine max HOM05D007169 ORTHO05D007243 5.6e-80 301.6 247 61.1
Gohir.D12G191801 Gossypium hirsutum HOM05D007169 ORTHO05D007243 5.6e-80 301.6 205 76.1
Gorai.008G206100 Gossypium raimondii HOM05D007169 ORTHO05D007243 1.2e-79 300.4 205 76.1
Prupe.5G151300 Prunus persica HOM05D007169 ORTHO05D007243 8.1e-79 297.7 258 61.2
Lj1g0026378 Lotus japonicus HOM05D007169 ORTHO05D007243 1.1e-78 297.4 213 67.6
QL10p002966 Quercus lobata HOM05D007169 ORTHO05D007243 1.8e-78 296.6 257 61.5
Gohir.D08G258666 Gossypium hirsutum HOM05D007169 ORTHO05D007243 5.2e-78 295.0 161 90.7
Aa31LG3G6930 Aethionema arabicum HOM05D007169 ORTHO05D007243 5.8e-77 291.6 249 61.8
Ca_16044_v3 Cicer arietinum L. HOM05D007169 ORTHO05D007243 6.4e-76 288.1 218 65.1
Psat5g051240 Pisum sativum HOM05D007169 ORTHO05D007243 8.4e-76 287.7 231 62.3
THA.LOC104803148 Tarenaya hassleriana HOM05D007169 ORTHO05D007243 1.1e-75 287.3 256 62.9
TPR.G14220 Trifolium pratense HOM05D007169 ORTHO05D007243 1.9e-75 286.6 230 60.9
Medtr3g099350 Medicago truncatula HOM05D007169 ORTHO05D007243 1.6e-74 283.5 233 60.5
CsaV3_1G009620 Cucumis sativus L. HOM05D007169 ORTHO05D007243 4.6e-74 282.0 259 59.5
Thhalv10014456m.g Eutrema salsugineum HOM05D007169 ORTHO05D007243 7.8e-74 281.2 250 59.2
MELO3C002358.2 Cucumis melo HOM05D007169 ORTHO05D007243 6.6e-73 278.1 264 58.3
Sp6g12560 Schrenkiella parvula HOM05D007169 ORTHO05D007243 8.7e-73 277.7 250 60.4
SpUn0015_0080 Schrenkiella parvula HOM05D007169 ORTHO05D007243 8.7e-73 277.7 250 60.4
SpUn0039_0020 Schrenkiella parvula HOM05D007169 ORTHO05D007243 8.7e-73 277.7 250 60.4
BolC2t08225H Brassica oleracea HOM05D007169 ORTHO05D007243 1.9e-72 276.6 247 59.5
Lalb_Chr08g0237141 Lupinus albus HOM05D007169 ORTHO05D007243 1.9e-72 276.6 222 62.6
RcHm_v2.0_Chr7g0190221 Rosa chinensis HOM05D007169 ORTHO05D007243 1.9e-72 276.6 217 61.3
Eucgr.K02727 Eucalyptus grandis HOM05D007169 ORTHO05D007243 2.5e-72 276.2 250 59.6
ClCG03G003730 Citrullus lanatus HOM05D007169 ORTHO05D007243 5.6e-72 275.0 256 59.4
AT5G50410 Arabidopsis thaliana HOM05D007169 ORTHO05D007243 1.2e-71 273.9 256 57.0
BcaB05g24052 Brassica carinata HOM05D007169 ORTHO05D007243 1.2e-71 273.9 249 57.4
BcaC03g14651 Brassica carinata HOM05D007169 ORTHO05D007243 1.2e-71 273.9 247 59.1
FvH4_5g08300 Fragaria vesca HOM05D007169 ORTHO05D007243 1.2e-71 273.9 247 57.9
PGR044G0546 Punica granatum HOM05D007169 ORTHO05D007243 1.6e-71 273.5 245 57.6
A02p12790 Brassica napus HOM05D007169 ORTHO05D007243 3.6e-71 272.3 247 57.5
BraA02t06336Z Brassica rapa HOM05D007169 ORTHO05D007243 3.6e-71 272.3 247 57.5
Carub.0008s1052 Capsella rubella HOM05D007169 ORTHO05D007243 3.6e-71 272.3 252 57.1
C02p20850 Brassica napus HOM05D007169 ORTHO05D007243 6.2e-71 271.6 247 59.5
CANSAT80G1416 Cannabis sativa HOM05D007169 ORTHO05D007243 1.4e-70 270.4 231 61.9
AL8G24630 Arabidopsis lyrata HOM05D007169 ORTHO05D007243 1.8e-70 270.0 252 57.1
FAN04G2393 Fragaria x ananassa HOM05D007169 ORTHO05D007243 3.1e-70 269.2 223 59.6
Cfa018798 Carpinus fangiana HOM05D007169 ORTHO05D007243 1.3e-68 263.8 204 64.2
Haze_07134 Corylus avellana HOM05D007169 ORTHO05D007243 2.2e-68 263.1 204 64.7
Sed0023866 Sechium edule HOM05D007169 ORTHO05D007243 2.9e-68 262.7 247 56.7
MD06G1142100 Malus domestica HOM05D007169 ORTHO05D007243 1.1e-67 260.8 258 53.1
RhsimUnG0231000 Rhododendron simsii HOM05D007169 ORTHO05D007243 3.2e-67 259.2 246 54.5
FAN18G0310 Fragaria x ananassa HOM05D007169 ORTHO05D007243 4.2e-67 258.8 255 54.9
MD14G1157400 Malus domestica HOM05D007169 ORTHO05D007243 4.6e-66 255.4 275 50.5
VMungo1309G2045 Vigna mungo HOM05D007169 ORTHO05D007243 1.1e-64 250.8 175 68.0
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 9.6e-64 247.7 243 56.0
Hma1.2p1_0014F.1_g009470 Hydrangea macrophylla HOM05D007169 ORTHO05D007243 2.1e-63 246.5 235 56.2
Sed0005692 Sechium edule HOM05D007169 ORTHO05D007243 8.1e-63 244.6 252 53.6
Medtr2g045120 Medicago truncatula HOM05D007169 ORTHO05D007243 2.4e-59 233.0 191 58.6
Medtr2g445400 Medicago truncatula HOM05D007169 ORTHO05D007243 4.2e-59 232.3 189 58.7
TAR374G1569 Trochodendron aralioides HOM05D007169 ORTHO05D007243 1.6e-58 230.3 241 51.5
Nn3g16473 Nelumbo nucifera HOM05D007169 ORTHO05D007243 8.7e-57 224.6 243 49.8
Lalb_Chr23g0273701 Lupinus albus HOM05D007169 ORTHO05D007243 1.1e-56 224.2 213 54.5
Sc04g0000670 Simmondsia chinensis HOM05D007169 ORTHO05D007243 1.9e-56 223.4 224 54.9
Dinv23144 Davidia involucrata HOM05D007169 ORTHO05D007243 2.8e-55 219.5 199 58.3
Lsat_1_v5_gn_1_28980 Lactuca sativa HOM05D007169 ORTHO05D007243 8.1e-55 218.0 249 48.2
CANSAT80G0844 Cannabis sativa HOM05D007169 ORTHO05D007243 3.1e-54 216.1 152 66.4
TAR371G0734 Trochodendron aralioides HOM05D007169 ORTHO05D007243 4.0e-54 215.7 240 48.3
TAR622G0369 Trochodendron aralioides HOM05D007169 ORTHO05D007243 3.4e-53 212.6 246 47.2
Rhsim08G0190100 Rhododendron simsii HOM05D007169 ORTHO05D007243 9.9e-53 211.1 227 49.8
Actinidia18344 Actinidia chinensis HOM05D007169 ORTHO05D007243 2.4e-51 206.5 152 64.5
CARHR257950 Cardamine hirsuta HOM05D007169 ORTHO05D007243 3.2e-51 206.1 253 46.6
CSS0048648 Camellia sinensis var. sinensis HOM05D007169 ORTHO05D007243 1.6e-50 203.8 149 68.5
vmacro07808 Vaccinium macrocarpon HOM05D007169 ORTHO05D007243 2.1e-50 203.4 344 39.0
HanXRQChr02g0034741 Helianthus annuus HOM05D007169 ORTHO05D007243 6.0e-50 201.8 248 45.6
ECA247G3219 Erigeron canadensis HOM05D007169 ORTHO05D007243 1.5e-48 197.2 222 46.8
PSO478G3704 Papaver somniferum HOM05D007169 ORTHO05D007243 5.3e-46 188.7 269 42.8
DCAR_021617 Daucus carota HOM05D007169 ORTHO05D007243 1.2e-45 187.6 209 47.4
Lj5A96T48 Lonicera japonica HOM05D007169 ORTHO05D007243 1.5e-45 187.2 153 59.5
DCAR_016391 Daucus carota HOM05D007169 ORTHO05D007243 7.6e-45 184.9 184 51.1
PSO017G4677 Papaver somniferum HOM05D007169 ORTHO05D007243 1.7e-44 183.7 272 40.8
AUR62029615 Chenopodium quinoa HOM05D007169 ORTHO05D007243 4.2e-43 179.1 141 63.8
SalBow5G4624 Salvia bowleyana HOM05D007169 ORTHO05D007243 6.0e-42 175.3 140 62.1
Aqoxy3G00802 Aquilegia oxysepala HOM05D007169 ORTHO05D007243 1.8e-41 173.7 220 45.9
Cc06_g22780 Coffea canephora HOM05D007169 ORTHO05D007243 1.8e-41 173.7 139 63.3
SalBow5G3517 Salvia bowleyana HOM05D007169 ORTHO05D007243 3.0e-41 172.9 140 61.4
EL10Ac5g11418 Beta vulgaris HOM05D007169 ORTHO05D007243 5.1e-41 172.2 135 66.7
ATR0561G062 Amborella trichopoda HOM05D011398 ORTHO05D007243 5.7e-40 168.7 226 39.8
MSTRG.11390 Avicennia marina HOM05D007169 ORTHO05D007243 5.7e-40 168.7 138 64.5
Solyc03g112570.2 Solanum lycopersicum HOM05D007169 ORTHO05D007243 7.4e-40 168.3 139 63.3
Oeu006492.1 Olea europaea HOM05D007169 ORTHO05D007243 9.7e-40 167.9 144 56.9
Sopen03g031630 Solanum pennellii HOM05D007169 ORTHO05D007243 9.7e-40 167.9 139 63.3
Ah.02g111120 Amaranthus hybridus HOM05D007169 ORTHO05D007243 3.7e-39 166.0 143 62.2
PGSC0003DMG400018172 Solanum tuberosum HOM05D007169 ORTHO05D007243 4.8e-39 165.6 139 61.9
CAN.G338.2 Capsicum annuum HOM05D007169 ORTHO05D007243 8.2e-39 164.9 136 62.5
Peaxi162Scf00089g01624 Petunia axillaris HOM05D007169 ORTHO05D007243 8.2e-39 164.9 138 61.6
HPP92_011766 Vanilla planifolia HOM05D007169 ORTHO05D007243 1.1e-38 164.5 218 41.3
FAN08G0105 Fragaria x ananassa HOM05D007169 ORTHO05D007243 2.4e-38 163.3 160 51.2
Migut.I00155 Erythranthe guttata HOM05D007169 ORTHO05D007243 5.3e-38 162.2 143 55.9
SGA_v2.0_scaffold56G20032 Striga asiatica HOM05D007169 ORTHO05D007243 5.3e-38 162.2 140 60.0
HPP92_011770 Vanilla planifolia HOM05D007169 ORTHO05D007243 2.9e-36 156.4 277 33.6
Nitab4.5_0011992g0030 Nicotiana tabacum HOM05D007169 ORTHO05D007243 3.3e-32 142.9 144 53.5
unitig_0.g2530 Utricularia gibba HOM05D007169 ORTHO05D007243 5.7e-32 142.1 146 53.4
Os08g0531200 Oryza sativa ssp. japonica HOM05D011398 ORTHO05D007243 2.4e-30 136.7 228 36.4
Hund26053 Selenicereus undatus HOM05D007169 ORTHO05D007243 1.2e-26 124.4 81 70.4
Zm00001eb175120 Zea mays HOM05D011398 ORTHO05D007243 6.1e-26 122.1 145 42.1
Sabra12G0071300 Salix brachista HOM05D000677 ORTHO05D000727 3.9e-25 119.4 138 47.8
SEGI_24222 Sequoiadendron giganteum HOM05D007169 ORTHO05D007243 1.4e-22 110.9 129 41.9
arahy.Tifrunner.gnm1.ann1.M1N3UH Arachis hypogaea HOM05D002218 ORTHO05D007243 1.7e-20 104.0 66 71.2
CBR_g46730 Chara braunii HOM05D011398 ORTHO05D007243 5.5e-11 72.4 77 46.8
CBR_g30247 Chara braunii HOM05D011398 ORTHO05D007243 6.1e-10 68.9 122 30.3
Mapoly0022s0039 Marchantia polymorpha HOM05D011398 ORTHO05D007243 1.4e-09 67.8 79 39.2
Pp3c9_18230 Physcomitrium patens HOM05D011398 ORTHO05D007243 5.3e-06 55.8 81 30.9


User provided reference genes

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