Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G126700 Theobroma cacao HOM05D005613 ORTHO05D006903 1.0e-173 613.2 297 100.0
Duzib205G1234 Durio zibethinus HOM05D005613 ORTHO05D006903 2.1e-158 562.4 291 92.4
Gohir.D07G056300 Gossypium hirsutum HOM05D005613 ORTHO05D006903 1.3e-155 553.1 287 92.0
Gorai.001G059700 Gossypium raimondii HOM05D005613 ORTHO05D006903 1.3e-155 553.1 287 92.0
Gohir.A07G051800 Gossypium hirsutum HOM05D005613 ORTHO05D006903 2.8e-155 552.0 287 92.0
Manes.06G118100 Manihot esculenta HOM05D005613 ORTHO05D006903 4.0e-149 531.6 287 87.8
Manes.14G052800 Manihot esculenta HOM05D005613 ORTHO05D006903 7.5e-148 527.3 287 87.8
PGR044G0561 Punica granatum HOM05D005613 ORTHO05D006903 2.8e-147 525.4 283 87.6
TWI23G0755 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 5.4e-146 521.2 287 86.1
TWI39G1237 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 7.0e-146 520.8 287 85.4
Dinv11157 Davidia involucrata HOM05D005613 ORTHO05D006903 1.6e-145 519.6 285 85.6
Potri.015G093500 Populus trichocarpa HOM05D005613 ORTHO05D006903 4.5e-145 518.1 288 85.8
CiPaw.11G009100 Carya illinoinensis HOM05D005613 ORTHO05D006903 5.9e-145 517.7 292 85.3
Actinidia15836 Actinidia chinensis HOM05D005613 ORTHO05D006903 1.0e-144 516.9 285 85.6
TAR371G0420 Trochodendron aralioides HOM05D005613 ORTHO05D006903 5.0e-144 514.6 284 85.6
MD06G1143700 Malus domestica HOM05D005613 ORTHO05D006903 6.5e-144 514.2 285 84.6
Glyma.06G171500 Glycine max HOM05D005613 ORTHO05D006903 8.6e-144 513.8 283 85.5
CSS0000406 Camellia sinensis var. sinensis HOM05D005613 ORTHO05D006903 1.5e-143 513.1 283 86.2
Ciclev10021465m.g Citrus clementina HOM05D005613 ORTHO05D006903 3.3e-143 511.9 283 85.5
Eucgr.K02737 Eucalyptus grandis HOM05D005613 ORTHO05D006903 3.3e-143 511.9 276 88.8
MD14G1159000 Malus domestica HOM05D005613 ORTHO05D006903 3.3e-143 511.9 285 84.6
RcHm_v2.0_Chr7g0190451 Rosa chinensis HOM05D005613 ORTHO05D006903 7.2e-143 510.8 289 83.7
Prupe.5G152900 Prunus persica HOM05D005613 ORTHO05D006903 1.6e-142 509.6 283 85.2
Glyma.04G194500 Glycine max HOM05D005613 ORTHO05D006903 2.8e-142 508.8 279 85.7
CANSAT80G2472 Cannabis sativa HOM05D005613 ORTHO05D006903 3.0e-141 505.4 285 82.8
Phvul.009G167500 Phaseolus vulgaris HOM05D005613 ORTHO05D006903 2.0e-140 502.7 283 84.5
THA.LOC104803145 Tarenaya hassleriana HOM05D005613 ORTHO05D006903 2.0e-140 502.7 284 83.5
GSVIVG01008514001 Vitis vinifera HOM05D005613 ORTHO05D006903 2.0e-140 502.7 285 86.0
FvH4_5g07950 Fragaria vesca HOM05D005613 ORTHO05D006903 2.6e-140 502.3 286 82.2
Lj1g0013310 Lotus japonicus HOM05D005613 ORTHO05D006903 2.6e-140 502.3 281 85.4
MELO3C002354.2 Cucumis melo HOM05D005613 ORTHO05D006903 1.3e-139 500.0 283 84.8
CsaV3_1G009570 Cucumis sativus L. HOM05D005613 ORTHO05D006903 1.3e-139 500.0 283 84.8
Aqoxy5G04126 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 3.7e-139 498.4 281 82.9
MSTRG.17588 Avicennia marina HOM05D005613 ORTHO05D006903 3.7e-139 498.4 285 82.5
PSO017G2706 Papaver somniferum HOM05D005613 ORTHO05D006903 1.1e-138 496.9 287 84.3
Haze_07235 Corylus avellana HOM05D005613 ORTHO05D006903 1.4e-138 496.5 320 76.9
Medtr3g089010 Medicago truncatula HOM05D005613 ORTHO05D006903 3.1e-138 495.4 288 81.6
PSO478G0845 Papaver somniferum HOM05D005613 ORTHO05D006903 4.1e-138 495.0 279 85.3
QL10p004130 Quercus lobata HOM05D005613 ORTHO05D006903 4.1e-138 495.0 291 83.2
QL10p004191 Quercus lobata HOM05D005613 ORTHO05D006903 5.4e-138 494.6 291 83.2
Psat5g169720 Pisum sativum HOM05D005613 ORTHO05D006903 2.0e-137 492.7 279 83.9
PSO017G3077 Papaver somniferum HOM05D005613 ORTHO05D006903 2.7e-137 492.3 275 86.2
PSO675G0985 Papaver somniferum HOM05D005613 ORTHO05D006903 5.9e-137 491.1 275 85.8
TPR.G26132 Trifolium pratense HOM05D005613 ORTHO05D006903 1.3e-136 490.0 316 76.6
Sed0021273 Sechium edule HOM05D005613 ORTHO05D006903 5.0e-136 488.0 273 86.1
arahy.Tifrunner.gnm1.ann1.91S2FI Arachis hypogaea HOM05D005613 ORTHO05D006903 1.1e-135 486.9 304 78.9
HanXRQChr09g0273061 Helianthus annuus HOM05D005613 ORTHO05D006903 1.1e-135 486.9 288 81.6
Lalb_Chr11g0069651 Lupinus albus HOM05D005613 ORTHO05D006903 1.1e-135 486.9 282 81.2
SalBow7G2516 Salvia bowleyana HOM05D005613 ORTHO05D006903 1.5e-135 486.5 288 81.2
VMungo1309G0937 Vigna mungo HOM05D005613 ORTHO05D006903 1.9e-135 486.1 265 87.5
Migut.N02308 Erythranthe guttata HOM05D005613 ORTHO05D006903 5.6e-135 484.6 282 80.5
Lsat_1_v5_gn_4_76740 Lactuca sativa HOM05D005613 ORTHO05D006903 5.6e-135 484.6 288 81.6
CAN.G767.35 Capsicum annuum HOM05D005613 ORTHO05D006903 7.3e-135 484.2 281 79.0
ClCG03G003690 Citrullus lanatus HOM05D005613 ORTHO05D006903 6.1e-134 481.1 330 73.9
ECA232G4063 Erigeron canadensis HOM05D005613 ORTHO05D006903 1.0e-133 480.3 284 81.3
Nitab4.5_0007541g0020 Nicotiana tabacum HOM05D005613 ORTHO05D006903 1.0e-133 480.3 283 78.1
CARHR258110 Cardamine hirsuta HOM05D005613 ORTHO05D006903 1.8e-133 479.6 276 81.9
Lj9C477T8 Lonicera japonica HOM05D005613 ORTHO05D006903 1.8e-133 479.6 287 82.2
AT5G50375 Arabidopsis thaliana HOM05D005613 ORTHO05D006903 3.0e-133 478.8 278 81.3
Sed0001462 Sechium edule HOM05D005613 ORTHO05D006903 3.0e-133 478.8 275 84.0
Aa31LG3G6910 Aethionema arabicum HOM05D005613 ORTHO05D006903 4.0e-133 478.4 281 81.9
Cc07_g17610 Coffea canephora HOM05D005613 ORTHO05D006903 6.8e-133 477.6 271 81.2
BcaC01g04807 Brassica carinata HOM05D005613 ORTHO05D006903 8.9e-133 477.2 278 81.3
Nitab4.5_0011040g0030 Nicotiana tabacum HOM05D005613 ORTHO05D006903 8.9e-133 477.2 283 77.7
Solyc12g098640.3 Solanum lycopersicum HOM05D005613 ORTHO05D006903 2.0e-132 476.1 283 77.7
Sopen12g033400 Solanum pennellii HOM05D005613 ORTHO05D006903 2.0e-132 476.1 283 77.7
AL8G24500 Arabidopsis lyrata HOM05D005613 ORTHO05D006903 3.4e-132 475.3 275 81.5
FAN13G2894 Fragaria x ananassa HOM05D005613 ORTHO05D006903 3.4e-132 475.3 288 78.1
Sabra15G0115100 Salix brachista HOM05D005613 ORTHO05D006903 3.4e-132 475.3 304 77.6
Carub.0008s1047 Capsella rubella HOM05D005613 ORTHO05D006903 4.4e-132 474.9 277 80.5
Hund02427 Selenicereus undatus HOM05D005613 ORTHO05D006903 9.8e-132 473.8 291 77.3
C03p33570 Brassica napus HOM05D005613 ORTHO05D006903 1.3e-131 473.4 280 81.1
PGSC0003DMG400004674 Solanum tuberosum HOM05D005613 ORTHO05D006903 1.3e-131 473.4 276 79.0
Cc00_g03610 Coffea canephora HOM05D005613 ORTHO05D006903 1.7e-131 473.0 273 80.6
Peaxi162Scf00378g00519 Petunia axillaris HOM05D005613 ORTHO05D006903 1.7e-131 473.0 283 77.7
Actinidia25589 Actinidia chinensis HOM05D005613 ORTHO05D006903 3.7e-131 471.9 255 87.8
EL10Ac5g11023 Beta vulgaris HOM05D005613 ORTHO05D006903 3.7e-131 471.9 284 79.2
A03p27830 Brassica napus HOM05D005613 ORTHO05D006903 3.7e-131 471.9 285 79.6
Thhalv10014300m.g Eutrema salsugineum HOM05D005613 ORTHO05D006903 3.7e-131 471.9 282 79.8
BolC3t15677H Brassica oleracea HOM05D005613 ORTHO05D006903 6.4e-131 471.1 286 79.4
BraA03t11994Z Brassica rapa HOM05D005613 ORTHO05D006903 8.3e-131 470.7 291 78.0
SpUn0050_0040 Schrenkiella parvula HOM05D005613 ORTHO05D006903 8.3e-131 470.7 278 80.6
BcaB01g02892 Brassica carinata HOM05D005613 ORTHO05D006903 1.1e-130 470.3 278 79.9
Rhsim08G0188600 Rhododendron simsii HOM05D005613 ORTHO05D006903 5.4e-130 468.0 297 80.1
AUR62032039 Chenopodium quinoa HOM05D005613 ORTHO05D006903 1.2e-129 466.8 286 78.3
arahy.Tifrunner.gnm1.ann1.AY81KB Arachis hypogaea HOM05D005613 ORTHO05D006903 4.6e-129 464.9 283 81.3
FAN18G4059 Fragaria x ananassa HOM05D005613 ORTHO05D006903 3.9e-128 461.8 326 69.6
unitig_27.g24986 Utricularia gibba HOM05D005613 ORTHO05D006903 3.3e-127 458.8 282 77.3
COL.COLO4_28085 Corchorus olitorius HOM05D005613 ORTHO05D006903 1.1e-125 453.8 233 93.6
DCAR_016405 Daucus carota HOM05D005613 ORTHO05D006903 8.9e-125 450.7 275 77.5
Zm00001eb265520 Zea mays HOM05D005613 ORTHO05D006903 2.0e-124 449.5 276 79.0
Dinv04871 Davidia involucrata HOM05D005613 ORTHO05D006903 2.9e-123 445.7 287 77.4
A09p55960 Brassica napus HOM05D005613 ORTHO05D006903 4.9e-123 444.9 280 76.1
BraA09t40998Z Brassica rapa HOM05D005613 ORTHO05D006903 4.9e-123 444.9 280 76.1
DCAR_021614 Daucus carota HOM05D005613 ORTHO05D006903 1.9e-122 443.0 278 74.5
CDE02G3999 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 5.4e-122 441.4 276 75.7
BcaB08g35134 Brassica carinata HOM05D005613 ORTHO05D006903 2.7e-121 439.1 278 75.2
FAN08G1682 Fragaria x ananassa HOM05D005613 ORTHO05D006903 6.0e-121 438.0 316 69.6
ATR0680G053 Amborella trichopoda HOM05D005613 ORTHO05D006903 1.0e-120 437.2 279 73.8
BolC8t51467H Brassica oleracea HOM05D005613 ORTHO05D006903 1.7e-120 436.4 276 74.6
SEGI_09495 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 2.3e-120 436.0 284 71.8
C08p38940 Brassica napus HOM05D005613 ORTHO05D006903 5.1e-120 434.9 276 74.3
Nn4g22373 Nelumbo nucifera HOM05D005613 ORTHO05D006903 6.2e-118 427.9 283 74.6
arahy.Tifrunner.gnm1.ann1.LN4RIT Arachis hypogaea HOM05D005613 ORTHO05D006903 1.8e-117 426.4 240 85.4
vmacro19214 Vaccinium macrocarpon HOM05D005613 ORTHO05D006903 5.8e-116 421.4 366 60.4
BcaC07g40897 Brassica carinata HOM05D005613 ORTHO05D006903 7.8e-113 411.0 280 70.4
unitig_699.g19129 Utricularia gibba HOM05D005613 ORTHO05D006903 2.3e-112 409.5 282 69.5
Cpa.g.sc13.142 Carica papaya HOM05D005613 ORTHO05D006903 1.1e-106 390.6 215 87.0
AUR62036512 Chenopodium quinoa HOM05D005613 ORTHO05D006903 9.2e-106 387.5 239 77.8
CDE09G1331 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 6.6e-104 381.3 276 67.8
SMO180G0005 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 2.8e-102 375.9 278 61.9
Aqoxy22s001 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 6.2e-102 374.8 204 86.3
BcaB05g24059 Brassica carinata HOM05D005613 ORTHO05D006903 1.1e-101 374.0 293 66.2
CiPaw.12G041000 Carya illinoinensis HOM05D005613 ORTHO05D006903 2.4e-98 362.8 196 86.2
SpUn0508_0010 Schrenkiella parvula HOM05D005613 ORTHO05D006903 1.5e-95 353.6 211 79.1
Mapoly0019s0004 Marchantia polymorpha HOM05D005613 ORTHO05D006903 2.1e-94 349.7 281 59.4
Pp3c14_22450 Physcomitrium patens HOM05D005613 ORTHO05D006903 1.1e-90 337.4 279 58.4
Aqoxy1G01617 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 4.2e-90 335.5 221 74.7
SHI39270 Sapria himalayana HOM05D005613 ORTHO05D006903 3.3e-87 325.9 189 80.4
SHI42710 Sapria himalayana HOM05D005613 ORTHO05D006903 3.3e-87 325.9 189 80.4
AUR62032713 Chenopodium quinoa HOM05D005613 ORTHO05D006903 3.1e-77 292.7 223 69.1
AagrBONN_evm.TU.Sc2ySwM_362.2466 Anthoceros agrestis HOM05D005613 ORTHO05D006903 9.0e-77 291.2 226 62.4
Cre16.g657300 Chlamydomonas reinhardtii HOM05D005613 ORTHO05D006903 1.2e-76 290.8 282 53.5
SGA_v2.0_scaffold42G16110 Striga asiatica HOM05D005613 ORTHO05D006903 3.2e-74 282.7 305 51.8
HPP92_006202 Vanilla planifolia HOM05D005613 ORTHO05D006903 1.3e-67 260.8 156 82.7
AagrBONN_evm.TU.Sc2ySwM_117.1130 Anthoceros agrestis HOM05D005613 ORTHO05D006903 9.4e-66 254.6 183 65.6
SGA_v2.0_scaffold115G32075 Striga asiatica HOM05D005613 ORTHO05D006903 1.0e-64 251.1 154 75.3
CBR_g48821 Chara braunii HOM05D005613 ORTHO05D006903 1.6e-57 227.3 212 50.9
SMO353G0009 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 3.0e-56 223.0 266 45.9
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 5.3e-53 212.2 131 77.1
SGA_v2.0_scaffold115G32072 Striga asiatica HOM05D000001 ORTHO05D000003 1.4e-48 197.6 191 52.9
HPP92_006201 Vanilla planifolia HOM05D005613 ORTHO05D006903 1.2e-41 174.5 106 76.4
PRCOL_00007276 Prasinoderma coloniale HOM05D005613 ORTHO05D006903 2.6e-39 166.8 274 39.1
MCO03G530 Micromonas commoda HOM05D005613 ORTHO05D006903 9.7e-39 164.9 211 41.7
SGA_v2.0_scaffold3G01513 Striga asiatica HOM05D005613 ORTHO05D006903 1.4e-32 144.4 113 62.8
Os11g0302500 Oryza sativa ssp. japonica HOM05D005613 ORTHO05D006903 1.8e-29 134.0 89 68.5
CBR_g48823 Chara braunii HOM05D005613 ORTHO05D006903 2.1e-17 94.0 72 63.9
arahy.Tifrunner.gnm1.ann1.W1BQBA Arachis hypogaea HOM05D005613 ORTHO05D006903 5.8e-15 85.9 45 86.7
SEGI_05867 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 2.2e-14 84.0 51 74.5


User provided reference genes

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