Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 6.8e-235 817.0 429 100.0
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 3.0e-206 721.8 429 87.9
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 1.1e-200 703.4 427 86.9
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 6.0e-191 671.0 434 80.0
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 7.9e-191 670.6 395 82.8
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 1.6e-188 662.9 394 82.7
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 2.7e-175 619.0 356 84.6
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 5.7e-173 611.3 391 75.7
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 4.8e-172 608.2 401 73.8
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 8.2e-172 607.4 399 75.2
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 2.6e-170 602.4 358 79.6
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 5.5e-168 594.7 398 72.6
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 1.6e-167 593.2 413 72.6
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 3.6e-167 592.0 399 74.2
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 6.1e-167 591.3 399 74.2
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 3.0e-166 589.0 402 72.6
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 3.9e-166 588.6 402 71.1
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 2.2e-164 582.8 396 72.2
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 2.8e-164 582.4 387 73.4
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 4.8e-164 581.6 394 72.1
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 4.8e-164 581.6 394 73.4
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.1e-163 580.5 408 69.9
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 1.8e-163 579.7 394 71.8
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 5.3e-163 578.2 394 72.1
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 2.0e-162 576.2 394 71.8
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 1.0e-161 573.9 396 72.2
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 1.3e-161 573.5 398 71.6
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 2.9e-161 572.4 446 65.5
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 8.5e-161 570.9 393 72.8
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 3.2e-160 568.9 397 70.0
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 3.2e-160 568.9 396 68.9
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 1.4e-158 563.5 399 69.2
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 1.8e-158 563.1 406 70.4
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 3.0e-158 562.4 400 69.5
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 1.2e-157 560.5 394 68.5
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 5.7e-157 558.1 400 69.5
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 4.8e-156 555.1 404 69.3
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 7.0e-155 551.2 435 63.7
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 9.1e-155 550.8 394 69.3
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 2.0e-154 549.7 373 74.0
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 2.7e-154 549.3 396 67.9
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 7.7e-154 547.7 400 67.2
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 1.0e-153 547.4 383 70.8
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 3.8e-153 545.4 396 66.7
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 3.8e-153 545.4 349 75.9
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 3.8e-153 545.4 402 68.2
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 1.5e-152 543.5 393 67.2
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 1.5e-152 543.5 382 70.2
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 3.2e-152 542.3 340 75.9
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 9.4e-152 540.8 395 66.6
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 1.2e-151 540.4 395 67.8
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 3.6e-151 538.9 399 67.4
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 8.0e-151 537.7 355 70.1
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 3.0e-150 535.8 401 68.8
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 3.0e-150 535.8 401 66.8
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 4.0e-150 535.4 388 69.1
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 5.2e-150 535.0 395 66.6
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 6.8e-150 534.6 395 66.1
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 1.5e-149 533.5 383 67.6
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 2.6e-149 532.7 395 66.3
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 4.4e-149 531.9 397 64.5
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 5.7e-149 531.6 352 70.7
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 9.8e-149 530.8 398 67.1
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 2.2e-148 529.6 340 73.8
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 2.8e-148 529.3 415 63.1
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 6.3e-148 528.1 411 65.5
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 8.3e-148 527.7 401 66.3
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 1.8e-147 526.6 368 67.9
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 2.4e-147 526.2 390 64.9
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 2.4e-147 526.2 383 67.6
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 3.1e-147 525.8 395 66.1
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 4.1e-147 525.4 395 64.6
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 4.1e-147 525.4 391 64.5
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 7.0e-147 524.6 321 77.9
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 1.2e-146 523.9 395 65.8
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 1.2e-146 523.9 402 65.4
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 2.7e-146 522.7 356 70.5
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 5.9e-146 521.5 356 70.5
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 2.9e-145 519.2 398 64.1
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 6.6e-145 518.1 434 62.7
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 6.6e-145 518.1 376 67.8
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 1.5e-144 516.9 376 67.8
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.9e-144 516.5 427 62.5
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.9e-144 516.5 427 62.5
Duzib068G0683 Durio zibethinus HOM05D004497 ORTHO05D005539 2.3e-142 509.6 288 86.8
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 2.3e-142 509.6 372 65.9
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 1.2e-141 507.3 339 71.1
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 3.4e-141 505.8 401 63.1
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 7.5e-141 504.6 364 65.7
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 1.2e-138 497.3 399 61.7
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 4.5e-138 495.4 400 61.5
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 1.3e-137 493.8 398 62.1
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 1.7e-137 493.4 402 62.4
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 6.6e-137 491.5 385 62.6
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 4.3e-136 488.8 400 62.2
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 5.6e-136 488.4 406 60.8
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 9.5e-136 487.6 399 63.7
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 1.4e-134 483.8 360 64.2
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 2.3e-134 483.0 384 61.5
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 3.1e-134 482.6 385 61.6
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 3.1e-134 482.6 403 62.8
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 1.2e-133 480.7 373 63.0
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 2.0e-133 479.9 373 62.7
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 4.4e-133 478.8 374 62.8
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 1.3e-132 477.2 360 64.7
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 6.4e-132 474.9 326 72.1
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 1.1e-131 474.2 445 57.5
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 1.9e-131 473.4 373 62.5
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 2.4e-131 473.0 373 62.5
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 2.4e-131 473.0 373 62.5
AUR62025903 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.0e-130 469.9 397 60.7
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 3.9e-129 465.7 403 59.6
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 6.6e-129 464.9 373 60.6
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 1.5e-128 463.8 431 55.7
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 1.4e-126 457.2 328 68.3
Cpa.g.sc166.23 Carica papaya HOM05D004497 ORTHO05D005539 8.6e-121 438.0 291 70.1
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 1.1e-120 437.6 359 60.7
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 3.3e-120 436.0 396 55.1
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 2.1e-119 433.3 408 53.2
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 2.9e-116 422.9 409 52.3
AUR62025086 Chenopodium quinoa HOM05D004497 ORTHO05D005539 3.7e-116 422.5 346 62.4
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 3.2e-115 419.5 407 54.8
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 2.1e-114 416.8 289 68.9
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 6.0e-114 415.2 322 63.7
Sabra12G0069700 Salix brachista HOM05D004497 ORTHO05D005539 5.8e-109 398.7 295 67.5
Aqoxy5G03495 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 1.2e-106 391.0 293 63.5
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 2.1e-98 363.6 391 51.9
AUR62025094 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.3e-92 344.4 291 59.8
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 5.4e-91 339.0 405 46.2
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 5.4e-91 339.0 424 46.2
Os07g0506700 Oryza sativa ssp. japonica HOM05D004497 ORTHO05D005539 2.1e-90 337.0 297 58.6
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 1.3e-84 317.8 356 47.5
Nitab4.5_0003013g0030 Nicotiana tabacum HOM05D004497 ORTHO05D005539 2.3e-81 307.0 397 46.6
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 5.5e-75 285.8 350 46.6
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 5.7e-72 275.8 400 43.8
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 1.6e-71 274.2 219 60.7
AUR62029644 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.8e-63 246.9 227 57.7
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 3.4e-61 240.0 300 44.0
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 3.9e-57 226.5 166 70.5
RcHm_v2.0_Chr0c30g0501231 Rosa chinensis HOM05D004497 ORTHO05D005539 4.4e-56 223.0 359 40.9
RcHm_v2.0_Chr3g0452771 Rosa chinensis HOM05D004497 ORTHO05D005539 4.4e-56 223.0 359 40.9
AUR62025088 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.5e-51 207.2 230 48.7
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 9.4e-51 205.3 417 35.3
Ca_16680_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000496 1.0e-49 201.8 158 61.4
RcHm_v2.0_Chr5g0041021 Rosa chinensis HOM05D004497 ORTHO05D005539 9.1e-46 188.7 364 37.4
AUR62025079 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.7e-37 160.6 157 53.5
Gohir.D13G181701 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.7e-31 141.4 105 68.6
Cre17.g718650 Chlamydomonas reinhardtii HOM05D004497 ORTHO05D005539 1.5e-27 128.3 385 27.3
MCO03G018 Micromonas commoda HOM05D004497 ORTHO05D005539 4.0e-25 120.2 380 27.4
TAR371G1248 Trochodendron aralioides HOM05D004497 ORTHO05D005539 4.4e-24 116.7 124 51.6
Oeu006698.1 Olea europaea HOM05D004497 ORTHO05D005539 6.6e-20 102.8 71 71.8
PRCOL_00003967 Prasinoderma coloniale HOM05D004497 ORTHO05D005539 3.3e-19 100.5 250 28.8
AUR62025092 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.0e-16 91.3 53 79.2
C04p39580 Brassica napus HOM05D004497 ORTHO05D005539 1.7e-15 88.2 86 55.8
BolC4t25523H Brassica oleracea HOM05D004497 ORTHO05D005539 1.7e-15 88.2 86 55.8
Phvul.003G017700 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 1.4e-14 85.1 75 57.3
COL.COLO4_36170 Corchorus olitorius HOM05D021494 ORTHO05D022415 4.3e-11 73.6 41 85.4
ECA248G2349 Erigeron canadensis HOM05D000041 ORTHO05D000452 2.4e-06 57.8 50 56.0


User provided reference genes

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