Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G124100 Theobroma cacao HOM05D007996 ORTHO05D009821 1.1e-28 129.4 74 100.0
Duzib084G1431 Durio zibethinus HOM05D007996 ORTHO05D009821 5.6e-20 100.5 78 78.2
CiPaw.12G036300 Carya illinoinensis HOM05D007996 ORTHO05D009821 9.0e-18 93.2 73 72.6
Atru.chr9.1020 Acer truncatum HOM05D007996 ORTHO05D009821 2.0e-17 92.0 74 73.0
Gohir.A12G188200 Gossypium hirsutum HOM05D007996 ORTHO05D009821 2.0e-17 92.0 80 71.2
Gohir.D12G191000 Gossypium hirsutum HOM05D007996 ORTHO05D009821 2.0e-17 92.0 80 71.2
Gorai.008G204900 Gossypium raimondii HOM05D007996 ORTHO05D009821 2.0e-17 92.0 80 71.2
QL10p004811 Quercus lobata HOM05D007996 ORTHO05D009821 1.3e-16 89.4 73 71.2
Potri.012G094000 Populus trichocarpa HOM05D007996 ORTHO05D009821 2.2e-16 88.6 73 71.2
TWI14G0037 Tripterygium wilfordii HOM05D007996 ORTHO05D009821 1.4e-15 85.9 73 67.1
Manes.14G054700 Manihot esculenta HOM05D007996 ORTHO05D009821 7.1e-15 83.6 65 67.7
Hma1.2p1_0014F.1_g009860 Hydrangea macrophylla HOM05D007996 ORTHO05D009821 3.5e-14 81.3 78 70.5
Manes.06G116300 Manihot esculenta HOM05D007996 ORTHO05D009821 4.6e-14 80.9 47 87.2
CiPaw.11G011200 Carya illinoinensis HOM05D007996 ORTHO05D009821 6.0e-14 80.5 74 70.3
Glyma.17G127600 Glycine max HOM05D007996 ORTHO05D009821 7.9e-14 80.1 73 67.1
SalBow5G2505 Salvia bowleyana HOM05D007996 ORTHO05D009821 7.9e-14 80.1 73 67.1
Solyc06g071930.1 Solanum lycopersicum HOM05D007996 ORTHO05D009821 1.3e-13 79.3 74 64.9
Sopen06g028210 Solanum pennellii HOM05D007996 ORTHO05D009821 1.3e-13 79.3 74 64.9
PGSC0003DMG400027111 Solanum tuberosum HOM05D007996 ORTHO05D009821 1.3e-13 79.3 74 64.9
Psat4g063440 Pisum sativum HOM05D007996 ORTHO05D009821 1.8e-13 79.0 74 66.2
Potri.015G091300 Populus trichocarpa HOM05D007996 ORTHO05D009821 1.8e-13 79.0 72 72.2
Phvul.003G208700 Phaseolus vulgaris HOM05D007996 ORTHO05D009821 2.3e-13 78.6 73 65.8
Medtr4g103970 Medicago truncatula HOM05D007996 ORTHO05D009821 3.0e-13 78.2 73 64.4
SalBow5G3809 Salvia bowleyana HOM05D007996 ORTHO05D009821 3.0e-13 78.2 73 65.8
EL10Ac7g18091 Beta vulgaris HOM05D007996 ORTHO05D009821 3.9e-13 77.8 74 60.8
CAN.G1046.7 Capsicum annuum HOM05D007996 ORTHO05D009821 3.9e-13 77.8 74 63.5
Cpa.g.sc4.79 Carica papaya HOM05D007996 ORTHO05D009821 3.9e-13 77.8 45 86.7
Lalb_Chr07g0183251 Lupinus albus HOM05D007996 ORTHO05D009821 3.9e-13 77.8 73 67.1
vmacro19229 Vaccinium macrocarpon HOM05D007996 ORTHO05D009821 3.9e-13 77.8 71 66.2
Lj4g0006448 Lotus japonicus HOM05D007996 ORTHO05D009821 5.1e-13 77.4 73 63.0
PGR044G0405 Punica granatum HOM05D007996 ORTHO05D009821 8.7e-13 76.6 70 65.7
CSS0022418 Camellia sinensis var. sinensis HOM05D007996 ORTHO05D009821 1.5e-12 75.9 73 61.6
Nn4g22432 Nelumbo nucifera HOM05D007996 ORTHO05D009821 1.5e-12 75.9 76 63.2
Glyma.05G045400 Glycine max HOM05D007996 ORTHO05D009821 1.9e-12 75.5 73 65.8
AUR62001291 Chenopodium quinoa HOM05D007996 ORTHO05D009821 3.3e-12 74.7 72 59.7
TPR.G40415 Trifolium pratense HOM05D007996 ORTHO05D009821 3.3e-12 74.7 73 61.6
Haze_07260 Corylus avellana HOM05D007996 ORTHO05D009821 5.6e-12 73.9 73 63.0
Prupe.5G156000 Prunus persica HOM05D007996 ORTHO05D009821 7.4e-12 73.6 73 68.5
COL.COLO4_16835 Corchorus olitorius HOM05D007996 ORTHO05D009821 2.8e-11 71.6 74 64.9
Lalb_Chr08g0236981 Lupinus albus HOM05D007996 ORTHO05D009821 2.8e-11 71.6 73 57.5
ClCG03G003560 Citrullus lanatus HOM05D007996 ORTHO05D009821 6.2e-11 70.5 73 56.2
CsaV3_1G009400 Cucumis sativus L. HOM05D007996 ORTHO05D009821 1.1e-10 69.7 68 60.3
Actinidia25607 Actinidia chinensis HOM05D007996 ORTHO05D009821 1.4e-10 69.3 72 61.1
Sed0027846 Sechium edule HOM05D007996 ORTHO05D009821 1.8e-10 68.9 73 56.2
Phvul.009G168600 Phaseolus vulgaris HOM05D007996 ORTHO05D009821 2.4e-10 68.6 68 60.3
Glyma.04G193300 Glycine max HOM05D007996 ORTHO05D009821 4.0e-10 67.8 71 60.6
Sed0008862 Sechium edule HOM05D007996 ORTHO05D009821 5.3e-10 67.4 73 54.8
Nn3g16560 Nelumbo nucifera HOM05D007996 ORTHO05D009821 6.9e-10 67.0 44 79.5
Solyc03g110990.1 Solanum lycopersicum HOM05D007996 ORTHO05D009821 6.9e-10 67.0 70 57.1
Aqoxy5G03550 Aquilegia oxysepala HOM05D007996 ORTHO05D009821 9.0e-10 66.6 75 60.0
FAN04G1274 Fragaria x ananassa HOM05D007996 ORTHO05D009821 9.0e-10 66.6 73 64.4
FAN13G1950 Fragaria x ananassa HOM05D007996 ORTHO05D009821 9.0e-10 66.6 73 64.4
AUR62025676 Chenopodium quinoa HOM05D007996 ORTHO05D009821 1.2e-09 66.2 72 58.3
Nitab4.5_0005327g0040 Nicotiana tabacum HOM05D007996 ORTHO05D009821 1.2e-09 66.2 70 60.0
Oeu045473.1 Olea europaea HOM05D007996 ORTHO05D009821 1.2e-09 66.2 72 59.7
RcHm_v2.0_Chr7g0190871 Rosa chinensis HOM05D007996 ORTHO05D009821 1.5e-09 65.9 72 65.3
MELO3C002341.2 Cucumis melo HOM05D007996 ORTHO05D009821 2.6e-09 65.1 71 59.2
Cc04_g10190 Coffea canephora HOM05D007996 ORTHO05D009821 7.6e-09 63.5 42 81.0
Oeu037569.1 Olea europaea HOM05D007996 ORTHO05D009821 7.6e-09 63.5 72 58.3
TAR629G0997 Trochodendron aralioides HOM05D007996 ORTHO05D009821 7.6e-09 63.5 74 62.2
Lj1g0020512 Lotus japonicus HOM05D007996 ORTHO05D009821 1.0e-08 63.2 75 56.0
DCAR_007470 Daucus carota HOM05D007996 ORTHO05D009821 1.3e-08 62.8 81 53.1
Peaxi162Scf00089g00319 Petunia axillaris HOM05D007996 ORTHO05D009821 1.7e-08 62.4 66 60.6
Lsat_1_v5_gn_1_29541 Lactuca sativa HOM05D007996 ORTHO05D009821 2.2e-08 62.0 75 61.3
Migut.I00487 Erythranthe guttata HOM05D007996 ORTHO05D009821 3.8e-08 61.2 37 73.0
Actinidia16189 Actinidia chinensis HOM05D007996 ORTHO05D009821 4.9e-08 60.8 38 81.6
CAN.G352.51 Capsicum annuum HOM05D007996 ORTHO05D009821 4.9e-08 60.8 71 54.9
CARHR258170 Cardamine hirsuta HOM05D013032 ORTHO05D009821 4.9e-08 60.8 70 50.0
FAN08G0192 Fragaria x ananassa HOM05D007996 ORTHO05D009821 4.9e-08 60.8 73 57.5
TWI39G0948 Tripterygium wilfordii HOM05D000063 ORTHO05D008721 6.5e-08 60.5 66 57.6
FAN18G2201 Fragaria x ananassa HOM05D007996 ORTHO05D009821 1.1e-07 59.7 73 56.2
MBI06_g40149_MAGBIO Magnolia biondii HOM05D007996 ORTHO05D009821 1.4e-07 59.3 82 51.2
THA.LOC109116227 Tarenaya hassleriana HOM05D007996 ORTHO05D009821 1.4e-07 59.3 69 53.6
Rhsim08G0186300 Rhododendron simsii HOM05D007996 ORTHO05D009821 1.9e-07 58.9 72 62.5
Sp6g12420 Schrenkiella parvula HOM05D013032 ORTHO05D009821 3.2e-07 58.2 71 47.9
AT5G50335 Arabidopsis thaliana HOM05D013032 ORTHO05D009821 4.2e-07 57.8 70 50.0
Carub.0008s1039 Capsella rubella HOM05D013032 ORTHO05D009821 5.5e-07 57.4 74 51.4
MBI11_g42682_MAGBIO Magnolia biondii HOM05D007996 ORTHO05D009821 5.5e-07 57.4 39 69.2
BcaB08g35412 Brassica carinata HOM05D013032 ORTHO05D009821 9.3e-07 56.6 71 47.9
AL8G24410 Arabidopsis lyrata HOM05D013032 ORTHO05D009821 1.6e-06 55.8 70 47.1
Thhalv10015187m.g Eutrema salsugineum HOM05D013032 ORTHO05D009821 2.1e-06 55.5 71 47.9
BcaC04g20800 Brassica carinata HOM05D013032 ORTHO05D009821 3.5e-06 54.7 71 46.5
A10p08350 Brassica napus HOM05D013032 ORTHO05D009821 3.5e-06 54.7 71 46.5
BolC9t56782H Brassica oleracea HOM05D013032 ORTHO05D009821 3.5e-06 54.7 71 46.5
BraSC37t46169Z Brassica rapa HOM05D013032 ORTHO05D009821 3.5e-06 54.7 71 46.5
Lsat_1_v5_gn_4_99100 Lactuca sativa HOM05D007996 ORTHO05D009821 6.0e-06 53.9 76 52.6


User provided reference genes

Program Settings