Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G123300 Theobroma cacao HOM05D008121 ORTHO05D009878 1.0e-80 303.5 177 100.0
Duzib205G1258 Durio zibethinus HOM05D008121 ORTHO05D009878 1.9e-50 203.0 174 71.3
COL.COLO4_03517 Corchorus olitorius HOM05D008121 ORTHO05D009878 4.6e-36 155.2 174 60.9
Duzib084G1233 Durio zibethinus HOM05D008121 ORTHO05D009878 3.3e-34 149.1 171 59.1
Gorai.006G270600 Gossypium raimondii HOM05D008121 ORTHO05D009878 2.9e-30 136.0 170 54.1
Gohir.D09G246100 Gossypium hirsutum HOM05D008121 ORTHO05D009878 4.9e-30 135.2 170 54.1
Gohir.A09G245200 Gossypium hirsutum HOM05D008121 ORTHO05D009878 8.7e-27 124.4 170 51.8
RcHm_v2.0_Chr7g0190901 Rosa chinensis HOM05D008121 ORTHO05D009878 3.7e-25 119.0 176 51.7
Prupe.5G156300 Prunus persica HOM05D008121 ORTHO05D009878 6.2e-25 118.2 165 49.1
FvH4_5g07590 Fragaria vesca HOM05D008121 ORTHO05D009878 5.3e-24 115.2 181 49.7
FAN08G2628 Fragaria x ananassa HOM05D000290 ORTHO05D004630 1.1e-21 107.5 164 50.6
TWI14G0571 Tripterygium wilfordii HOM05D008121 ORTHO05D009878 9.3e-21 104.4 185 43.8
Haze_07274 Corylus avellana HOM05D008121 ORTHO05D009878 3.5e-20 102.4 173 47.4
Potri.015G091100 Populus trichocarpa HOM05D008121 ORTHO05D009878 4.6e-20 102.1 173 50.9
FAN04G1418 Fragaria x ananassa HOM05D000290 ORTHO05D004630 1.8e-19 100.1 179 46.4
CiPaw.12G036100 Carya illinoinensis HOM05D008121 ORTHO05D009878 3.0e-19 99.4 174 46.6
QL10p005006 Quercus lobata HOM05D008121 ORTHO05D009878 9.6e-18 94.4 165 46.1
MD06G1149100 Malus domestica HOM05D008121 ORTHO05D009878 3.7e-17 92.4 176 43.2
CsaV3_1G009340 Cucumis sativus L. HOM05D008121 ORTHO05D009878 1.2e-15 87.4 178 42.7
Manes.14G055100 Manihot esculenta HOM05D008121 ORTHO05D009878 1.5e-15 87.0 182 41.8
Atru.chr9.1017 Acer truncatum HOM05D008121 ORTHO05D009878 2.0e-15 86.7 179 41.9
Sabra15G0113100 Salix brachista HOM05D000290 ORTHO05D004630 4.5e-15 85.5 188 41.5
Cpa.g.sc4.77 Carica papaya HOM05D008121 ORTHO05D009878 5.8e-15 85.1 176 39.8
ClCG03G003530 Citrullus lanatus HOM05D008121 ORTHO05D009878 1.0e-14 84.3 173 43.4
CSS0015443 Camellia sinensis var. sinensis HOM05D008121 ORTHO05D009878 1.3e-14 84.0 176 38.1
MELO3C002337.2 Cucumis melo HOM05D008121 ORTHO05D009878 1.7e-14 83.6 150 44.0
Hma1.2p1_0014F.1_g009910 Hydrangea macrophylla HOM05D008121 ORTHO05D009878 3.8e-14 82.4 174 40.2
Cfa018889 Carpinus fangiana HOM05D008121 ORTHO05D009878 1.9e-13 80.1 191 39.8
CiPaw.11G011700 Carya illinoinensis HOM05D008121 ORTHO05D009878 3.2e-13 79.3 172 41.3
Sed0025515 Sechium edule HOM05D008121 ORTHO05D009878 3.2e-13 79.3 177 39.5
FAN18G2983 Fragaria x ananassa HOM05D000290 ORTHO05D004630 1.2e-12 77.4 148 45.3
GSVIVG01007536001 Vitis vinifera HOM05D008121 ORTHO05D009878 6.1e-12 75.1 181 39.2
CANSAT80G0868 Cannabis sativa HOM05D008121 ORTHO05D009878 3.9e-11 72.4 150 42.0
Actinidia25609 Actinidia chinensis HOM05D008121 ORTHO05D009878 6.7e-11 71.6 171 36.3
arahy.Tifrunner.gnm1.ann1.YZZN9M Arachis hypogaea HOM05D008121 ORTHO05D009878 1.1e-10 70.9 181 36.5
Migut.I00480 Erythranthe guttata HOM05D008121 ORTHO05D009878 1.5e-10 70.5 164 40.9
Nn4g22451 Nelumbo nucifera HOM05D008121 ORTHO05D009878 1.5e-10 70.5 53 73.6
arahy.Tifrunner.gnm1.ann1.DV5N5R Arachis hypogaea HOM05D008121 ORTHO05D009878 2.5e-10 69.7 181 37.6
Dinv38465 Davidia involucrata HOM05D008121 ORTHO05D009878 3.3e-10 69.3 175 38.9
Oeu018378.1 Olea europaea HOM05D008121 ORTHO05D009878 4.3e-10 68.9 152 40.8
Dinv02922 Davidia involucrata HOM05D008121 ORTHO05D009878 1.3e-09 67.4 175 38.9
AUR62001288 Chenopodium quinoa HOM05D008121 ORTHO05D009878 2.2e-09 66.6 141 39.7
Lalb_Chr13g0297421 Lupinus albus HOM05D008121 ORTHO05D009878 2.2e-09 66.6 147 40.8
Rhsim08G0185200 Rhododendron simsii HOM05D000290 ORTHO05D004630 2.2e-09 66.6 176 33.0
Glyma.17G127300 Glycine max HOM05D008121 ORTHO05D009878 2.8e-09 66.2 177 36.7
Medtr4g104040 Medicago truncatula HOM05D008121 ORTHO05D009878 2.8e-09 66.2 143 37.8
Ah.15g095290 Amaranthus hybridus HOM05D001185 ORTHO05D002551 3.7e-09 65.9 141 39.7
Ca_05561_v3 Cicer arietinum L. HOM05D008121 ORTHO05D009878 1.1e-08 64.3 141 37.6
DCAR_026211 Daucus carota HOM05D008121 ORTHO05D009878 1.1e-08 64.3 181 35.9
Lj4g0024363 Lotus japonicus HOM05D008121 ORTHO05D009878 1.1e-08 64.3 140 40.0
Cc04_g10260 Coffea canephora HOM05D008121 ORTHO05D009878 2.4e-08 63.2 175 35.4
Psat4g064880 Pisum sativum HOM05D008121 ORTHO05D009878 2.4e-08 63.2 148 39.9
Hund05652 Selenicereus undatus HOM05D008121 ORTHO05D009878 4.1e-08 62.4 50 64.0
vmacro19236 Vaccinium macrocarpon HOM05D008121 ORTHO05D009878 5.3e-08 62.0 176 31.2
Ciclev10023121m.g Citrus clementina HOM05D008121 ORTHO05D009878 6.9e-08 61.6 52 71.2
Ciclev10024026m.g Citrus clementina HOM05D008121 ORTHO05D009878 6.9e-08 61.6 52 71.2
Nitab4.5_0005327g0050 Nicotiana tabacum HOM05D008121 ORTHO05D009878 6.9e-08 61.6 175 34.9
MSTRG.22918 Avicennia marina HOM05D008121 ORTHO05D009878 9.0e-08 61.2 176 39.2
TPR.G37567 Trifolium pratense HOM05D008121 ORTHO05D009878 1.2e-07 60.8 191 37.2
PSO339G0123 Papaver somniferum HOM05D008121 ORTHO05D009878 1.5e-07 60.5 60 68.3
Atru.chr3.667 Acer truncatum HOM05D008121 ORTHO05D009878 2.0e-07 60.1 72 52.8
A06p19190 Brassica napus HOM05D011481 ORTHO05D009878 2.0e-07 60.1 55 60.0
BraA06t25002Z Brassica rapa HOM05D011481 ORTHO05D009878 2.0e-07 60.1 55 60.0
EL10Ac7g18085 Beta vulgaris HOM05D008121 ORTHO05D009878 2.6e-07 59.7 175 36.0
PSO384G0802 Papaver somniferum HOM05D008121 ORTHO05D009878 4.5e-07 58.9 81 54.3
BcaC07g39334 Brassica carinata HOM05D011481 ORTHO05D009878 1.0e-06 57.8 55 58.2
C08p23500 Brassica napus HOM05D011481 ORTHO05D009878 1.0e-06 57.8 55 58.2
BolC8t49978H Brassica oleracea HOM05D011481 ORTHO05D009878 1.0e-06 57.8 55 58.2
Eucgr.K02754 Eucalyptus grandis HOM05D011481 ORTHO05D009878 1.3e-06 57.4 163 38.0
Glyma.05G045100 Glycine max HOM05D008121 ORTHO05D009878 1.7e-06 57.0 174 34.5
SGA_v2.0_scaffold161G37821 Striga asiatica HOM05D008121 ORTHO05D009878 1.7e-06 57.0 170 38.2
Phvul.003G208400 Phaseolus vulgaris HOM05D008121 ORTHO05D009878 2.2e-06 56.6 174 35.1
BcaB01g00807 Brassica carinata HOM05D011481 ORTHO05D009878 2.9e-06 56.2 55 56.4
PGSC0003DMG400015199 Solanum tuberosum HOM05D008121 ORTHO05D009878 6.5e-06 55.1 175 34.3
Nitab4.5_0005418g0010 Nicotiana tabacum HOM05D008121 ORTHO05D009878 8.5e-06 54.7 176 32.4


User provided reference genes

Program Settings