Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G118900 Theobroma cacao HOM05D007298 ORTHO05D009226 2.8e-160 568.5 288 100.0
COL.COLO4_37432 Corchorus olitorius HOM05D007298 ORTHO05D009226 4.9e-120 434.9 297 79.5
Duzib205G1649 Durio zibethinus HOM05D007298 ORTHO05D009226 9.6e-116 420.6 292 78.8
Gohir.A12G186800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 4.4e-105 385.2 293 71.3
Gohir.D12G189800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 4.4e-105 385.2 293 71.7
Gorai.008G203600 Gossypium raimondii HOM05D007298 ORTHO05D009226 2.9e-104 382.5 293 71.0
CiPaw.13G179900 Carya illinoinensis HOM05D007298 ORTHO05D009226 3.8e-88 328.9 292 64.4
Cfa009528 Carpinus fangiana HOM05D007298 ORTHO05D009226 1.9e-87 326.6 304 65.1
Sabra01G0000900 Salix brachista HOM05D007298 ORTHO05D009226 1.6e-86 323.6 293 61.1
Potri.001G001000 Populus trichocarpa HOM05D007298 ORTHO05D009226 3.9e-85 318.9 276 63.8
vmacro16084 Vaccinium macrocarpon HOM05D007298 ORTHO05D009226 2.3e-77 293.1 295 57.6
Actinidia30606 Actinidia chinensis HOM05D007298 ORTHO05D009226 3.7e-75 285.8 287 54.7
ClCG06G017280 Citrullus lanatus HOM05D007298 ORTHO05D009226 3.7e-75 285.8 290 57.2
Hma1.2p1_1436F.1_g283160 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 1.8e-74 283.5 296 57.1
Lj4g0005920 Lotus japonicus HOM05D007298 ORTHO05D009226 4.1e-74 282.3 289 55.7
MELO3C026268.2 Cucumis melo HOM05D007298 ORTHO05D009226 9.0e-74 281.2 290 55.9
CsaV3_1G001220 Cucumis sativus L. HOM05D007298 ORTHO05D009226 7.7e-73 278.1 290 55.9
MBI13_g02430_MAGBIO Magnolia biondii HOM05D007298 ORTHO05D009226 1.7e-72 276.9 289 57.8
Rhsim12G0097800 Rhododendron simsii HOM05D007298 ORTHO05D009226 2.9e-72 276.2 276 57.6
Sed0017427 Sechium edule HOM05D007298 ORTHO05D009226 2.9e-72 276.2 289 54.7
Haze_22918 Corylus avellana HOM05D007298 ORTHO05D009226 8.5e-72 274.6 300 59.7
TAR623G1587 Trochodendron aralioides HOM05D007298 ORTHO05D009226 4.2e-71 272.3 286 60.5
Psat7g113280 Pisum sativum HOM05D007298 ORTHO05D009226 1.2e-70 270.8 297 54.5
Cc11_g17470 Coffea canephora HOM05D007298 ORTHO05D009226 2.7e-70 269.6 290 53.8
TPR.G16338 Trifolium pratense HOM05D007298 ORTHO05D009226 3.6e-70 269.2 301 55.1
TWI32G0891 Tripterygium wilfordii HOM05D007298 ORTHO05D009226 1.0e-69 267.7 280 59.3
VMungo0251G1522 Vigna mungo HOM05D007298 ORTHO05D009226 1.0e-69 267.7 297 55.2
Lalb_Chr16g0383911 Lupinus albus HOM05D007298 ORTHO05D009226 1.1e-68 264.2 294 52.4
CSS0015764 Camellia sinensis var. sinensis HOM05D007298 ORTHO05D009226 1.5e-68 263.8 288 54.5
QL01p007822 Quercus lobata HOM05D007298 ORTHO05D009226 2.6e-68 263.1 287 57.5
Phvul.002G230700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 5.7e-68 261.9 294 55.4
Nn2g15906 Nelumbo nucifera HOM05D007298 ORTHO05D009226 4.8e-67 258.8 307 53.4
Medtr4g088515 Medicago truncatula HOM05D000062 ORTHO05D000043 1.5e-65 253.8 289 54.3
Lalb_Chr09g0327771 Lupinus albus HOM05D007298 ORTHO05D009226 2.0e-65 253.4 293 52.2
Glyma.07G199400 Glycine max HOM05D007298 ORTHO05D009226 4.5e-65 252.3 295 52.9
Lalb_Chr05g0218531 Lupinus albus HOM05D007298 ORTHO05D009226 7.7e-65 251.5 288 50.7
Nn7g35796 Nelumbo nucifera HOM05D007298 ORTHO05D009226 6.5e-64 248.4 295 52.9
Aqoxy2G04036 Aquilegia oxysepala HOM05D007298 ORTHO05D009226 1.9e-63 246.9 276 55.8
arahy.Tifrunner.gnm1.ann1.IS7ZQD Arachis hypogaea HOM05D002349 ORTHO05D002464 7.9e-62 241.5 292 49.7
arahy.Tifrunner.gnm1.ann1.MB6W4F Arachis hypogaea HOM05D002349 ORTHO05D002464 7.9e-62 241.5 292 49.7
Glyma.13G177000 Glycine max HOM05D007298 ORTHO05D009226 3.0e-61 239.6 300 52.0
PGR119G1464 Punica granatum HOM05D007298 ORTHO05D009226 2.8e-59 233.0 287 53.0
Ca_18576_v3 Cicer arietinum L. HOM05D007298 ORTHO05D009226 1.8e-58 230.3 286 51.7
Duzib084G1143 Durio zibethinus HOM05D007298 ORTHO05D009226 1.8e-58 230.3 207 66.7
Peaxi162Scf00128g01770 Petunia axillaris HOM05D007298 ORTHO05D009226 7.0e-58 228.4 295 50.2
Eucgr.J01725 Eucalyptus grandis HOM05D007298 ORTHO05D009226 1.2e-57 227.6 300 49.7
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 2.0e-57 226.9 293 49.1
Nitab4.5_0008442g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 3.5e-57 226.1 301 48.2
Ciclev10017525m.g Citrus clementina HOM05D007298 ORTHO05D009226 1.0e-56 224.6 250 55.6
Sc05g0003880 Simmondsia chinensis HOM05D007298 ORTHO05D009226 2.5e-55 219.9 308 46.8
Actinidia09612 Actinidia chinensis HOM05D007298 ORTHO05D009226 3.2e-55 219.5 277 48.7
MD11G1000700 Malus domestica HOM05D007298 ORTHO05D009226 4.7e-54 215.7 283 51.9
Manes.15G111000 Manihot esculenta HOM05D007298 ORTHO05D009226 1.0e-53 214.5 294 48.0
PGSC0003DMG400025413 Solanum tuberosum HOM05D007298 ORTHO05D009226 1.2e-52 211.1 291 47.4
RcHm_v2.0_Chr5g0084091 Rosa chinensis HOM05D007298 ORTHO05D009226 1.3e-51 207.6 357 43.1
Carub.0007s1454 Capsella rubella HOM05D007298 ORTHO05D009226 4.8e-51 205.7 315 44.8
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 6.3e-51 205.3 280 48.2
Prupe.6G001000 Prunus persica HOM05D007298 ORTHO05D009226 1.1e-50 204.5 329 45.6
Sp7g24320 Schrenkiella parvula HOM05D007298 ORTHO05D009226 1.8e-50 203.8 312 45.8
C07p54880 Brassica napus HOM05D007298 ORTHO05D009226 4.1e-50 202.6 312 43.9
BolC7t45976H Brassica oleracea HOM05D007298 ORTHO05D009226 4.1e-50 202.6 312 43.9
FvH4_3g45980 Fragaria vesca HOM05D007298 ORTHO05D009226 4.1e-50 202.6 318 46.2
Sopen05g018720 Solanum pennellii HOM05D007298 ORTHO05D009226 4.1e-50 202.6 278 47.1
AUR62008624 Chenopodium quinoa HOM05D007298 ORTHO05D009226 2.0e-49 200.3 249 53.4
FAN16G2589 Fragaria x ananassa HOM05D007298 ORTHO05D009226 2.0e-49 200.3 319 44.8
THA.LOC104813474 Tarenaya hassleriana HOM05D007298 ORTHO05D009226 2.0e-49 200.3 311 45.7
AT4G26415 Arabidopsis thaliana HOM05D007298 ORTHO05D009226 2.7e-49 199.9 315 43.5
A03p56680 Brassica napus HOM05D007298 ORTHO05D009226 3.5e-49 199.5 311 43.7
BraA03t14738Z Brassica rapa HOM05D007298 ORTHO05D009226 3.5e-49 199.5 311 43.7
Cpa.g.sc119.13 Carica papaya HOM05D007298 ORTHO05D009226 1.0e-48 198.0 282 46.5
Solyc05g024020.1 Solanum lycopersicum HOM05D007298 ORTHO05D009226 1.0e-48 198.0 274 47.4
BcaC06g32750 Brassica carinata HOM05D007298 ORTHO05D009226 2.2e-48 196.8 292 44.5
Dinv31519 Davidia involucrata HOM05D007298 ORTHO05D009226 5.0e-48 195.7 238 53.4
Migut.K01030 Erythranthe guttata HOM05D007298 ORTHO05D009226 6.5e-48 195.3 271 46.9
AL7G26540 Arabidopsis lyrata HOM05D007298 ORTHO05D009226 2.1e-46 190.3 296 43.2
AUR62033147 Chenopodium quinoa HOM05D007298 ORTHO05D009226 6.1e-46 188.7 239 52.7
Thhalv10026008m.g Eutrema salsugineum HOM05D007298 ORTHO05D009226 8.0e-46 188.3 292 43.8
Lsat_1_v5_gn_4_2201 Lactuca sativa HOM05D007298 ORTHO05D009226 1.0e-45 188.0 289 43.6
CARHR233970 Cardamine hirsuta HOM05D007298 ORTHO05D009226 3.0e-45 186.4 303 44.2
Sed0020092 Sechium edule HOM05D007298 ORTHO05D009226 1.5e-44 184.1 228 53.1
EL10Ac4g07728 Beta vulgaris HOM05D007298 ORTHO05D009226 2.0e-44 183.7 258 47.7
FAN21G1139 Fragaria x ananassa HOM05D007298 ORTHO05D009226 1.3e-43 181.0 303 43.9
FAN11G2203 Fragaria x ananassa HOM05D007298 ORTHO05D009226 1.1e-42 177.9 302 44.7
FAN25G2175 Fragaria x ananassa HOM05D007298 ORTHO05D009226 2.4e-42 176.8 331 42.6
Ah.08g213460 Amaranthus hybridus HOM05D007298 ORTHO05D009226 1.2e-41 174.5 285 45.3
Hma1.2p1_0459F.1_g157260 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 2.0e-41 173.7 247 49.0
BcaNung02423 Brassica carinata HOM05D007298 ORTHO05D009226 1.3e-40 171.0 309 41.7
CANSAT11G1103 Cannabis sativa HOM05D007298 ORTHO05D009226 1.3e-40 171.0 225 51.1
ATR0068G085 Amborella trichopoda HOM05D007298 ORTHO05D009226 5.0e-40 169.1 329 39.5
DCAR_006996 Daucus carota HOM05D007298 ORTHO05D009226 9.5e-39 164.9 259 43.6
SGA_v2.0_scaffold9G04794 Striga asiatica HOM05D002076 ORTHO05D002087 2.1e-38 163.7 288 39.2
HanXRQChr12g0385721 Helianthus annuus HOM05D007298 ORTHO05D009226 1.7e-35 154.1 245 42.9
Zm00001eb127960 Zea mays HOM05D007298 ORTHO05D009226 1.6e-33 147.5 312 36.9
DCAR_006994 Daucus carota HOM05D007298 ORTHO05D009226 1.0e-32 144.8 245 41.6
SalBow2G0405 Salvia bowleyana HOM05D007298 ORTHO05D009226 1.7e-32 144.1 261 39.1
SalBow2G1404 Salvia bowleyana HOM05D007298 ORTHO05D009226 1.7e-32 144.1 261 39.1
Glyma.15G076400 Glycine max HOM05D007298 ORTHO05D009226 5.0e-32 142.5 222 41.9
unitig_22.g6385 Utricularia gibba HOM05D007298 ORTHO05D009226 5.0e-32 142.5 231 42.9
Glyma.13G237100 Glycine max HOM05D007298 ORTHO05D009226 6.4e-27 125.6 132 53.8
Phvul.006G183700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 1.5e-20 104.4 218 38.1
CDE07G0295 Ceratophyllum demersum HOM05D000114 ORTHO05D000038 1.0e-16 91.7 117 50.4
Nitab4.5_0000340g0060 Nicotiana tabacum HOM05D007298 ORTHO05D009226 8.1e-14 82.0 96 54.2
BcaC09g50696 Brassica carinata HOM05D007298 ORTHO05D009226 1.2e-09 68.2 99 39.4
C01p22230 Brassica napus HOM05D007298 ORTHO05D009226 1.2e-09 68.2 99 39.4
BolC1t02153H Brassica oleracea HOM05D007298 ORTHO05D009226 1.2e-09 68.2 99 39.4
C01p22270 Brassica napus HOM05D007298 ORTHO05D009226 6.2e-06 55.8 130 40.8


User provided reference genes

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