Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G114600 Theobroma cacao HOM05D007960 ORTHO05D010026 1.8e-52 209.1 121 100.0
Duzib205G0322 Durio zibethinus HOM05D007960 ORTHO05D010026 1.3e-29 133.3 124 67.7
Gohir.D03G100500 Gossypium hirsutum HOM05D007960 ORTHO05D010026 3.2e-28 128.6 131 58.8
Gorai.003G106000 Gossypium raimondii HOM05D007960 ORTHO05D010026 3.2e-28 128.6 131 58.8
Gohir.A03G074200 Gossypium hirsutum HOM05D007960 ORTHO05D010026 3.0e-26 122.1 131 56.5
Atru.chr9.701 Acer truncatum HOM05D007960 ORTHO05D010026 8.0e-24 114.0 83 67.5
Ciclev10024471m.g Citrus clementina HOM05D007960 ORTHO05D010026 1.5e-22 109.8 114 54.4
Haze_18568 Corylus avellana HOM05D007960 ORTHO05D010026 3.5e-19 98.6 76 55.3
Haze_18570 Corylus avellana HOM05D007960 ORTHO05D010026 3.5e-19 98.6 76 55.3
QL10p022177 Quercus lobata HOM05D007960 ORTHO05D010026 3.0e-18 95.5 79 57.0
Carub.0002s2086 Capsella rubella HOM05D007960 ORTHO05D010026 6.6e-18 94.4 82 58.5
Hma1.2p1_0340F.1_g130110 Hydrangea macrophylla HOM05D007960 ORTHO05D010026 6.6e-18 94.4 112 46.4
CARHR067210 Cardamine hirsuta HOM05D007960 ORTHO05D010026 1.9e-17 92.8 82 57.3
Aa31LG4G4360 Aethionema arabicum HOM05D007960 ORTHO05D010026 3.3e-17 92.0 88 52.3
Medtr2g056070 Medicago truncatula HOM05D007960 ORTHO05D010026 4.3e-17 91.7 114 47.4
COL.COLO4_32178 Corchorus olitorius HOM05D007960 ORTHO05D010026 5.6e-17 91.3 60 70.0
Cfa019847 Carpinus fangiana HOM05D007960 ORTHO05D010026 1.2e-16 90.1 76 53.9
Thhalv10019432m.g Eutrema salsugineum HOM05D007960 ORTHO05D010026 1.2e-16 90.1 82 57.3
Nn3g17652 Nelumbo nucifera HOM05D007960 ORTHO05D010026 1.6e-16 89.7 116 44.0
Sp5g29280 Schrenkiella parvula HOM05D007960 ORTHO05D010026 1.6e-16 89.7 85 51.8
AL2G33950 Arabidopsis lyrata HOM05D007960 ORTHO05D010026 2.8e-16 89.0 74 60.8
C06p48150 Brassica napus HOM05D007960 ORTHO05D010026 4.7e-16 88.2 83 56.6
BcaC08g46805 Brassica carinata HOM05D007960 ORTHO05D010026 6.2e-16 87.8 83 55.4
BolC6t39852H Brassica oleracea HOM05D007960 ORTHO05D010026 6.2e-16 87.8 83 55.4
AT1G74055 Arabidopsis thaliana HOM05D007960 ORTHO05D010026 8.1e-16 87.4 74 58.1
BcaC08g46834 Brassica carinata HOM05D007960 ORTHO05D010026 1.1e-15 87.0 83 55.4
A07p39920 Brassica napus HOM05D007960 ORTHO05D010026 1.1e-15 87.0 83 55.4
BraA07t31538Z Brassica rapa HOM05D007960 ORTHO05D010026 1.1e-15 87.0 83 55.4
Psat1g027680 Pisum sativum HOM05D007960 ORTHO05D010026 2.3e-15 85.9 111 45.9
CiPaw.15G122900 Carya illinoinensis HOM05D007960 ORTHO05D010026 6.8e-15 84.3 80 48.8
Ca_02635_v3 Cicer arietinum L. HOM05D007960 ORTHO05D010026 6.8e-15 84.3 77 58.4
Ca_30215_v3 Cicer arietinum L. HOM05D007960 ORTHO05D010026 6.8e-15 84.3 77 58.4
Cpa.g.sc13.82 Carica papaya HOM05D007960 ORTHO05D010026 5.8e-14 81.3 103 47.6
FAN18G0932 Fragaria x ananassa HOM05D000227 ORTHO05D001491 1.7e-13 79.7 90 51.1
Peaxi162Scf00017g03010 Petunia axillaris HOM05D007960 ORTHO05D001491 3.7e-13 78.6 72 56.9
Lalb_Chr13g0302531 Lupinus albus HOM05D007960 ORTHO05D010026 6.4e-13 77.8 80 50.0
RcHm_v2.0_Chr7g0184281 Rosa chinensis HOM05D007960 ORTHO05D010026 6.4e-13 77.8 94 50.0
TPR.G31006 Trifolium pratense HOM05D007960 ORTHO05D010026 1.9e-12 76.3 74 54.1
TAR371G0138 Trochodendron aralioides HOM05D007960 ORTHO05D010026 1.9e-12 76.3 87 44.8
Lj1g0016835 Lotus japonicus HOM05D007960 ORTHO05D010026 5.4e-12 74.7 83 53.0
Manes.01G022400 Manihot esculenta HOM05D007960 ORTHO05D010026 9.2e-12 73.9 73 56.2
Prupe.5G214000 Prunus persica HOM05D007960 ORTHO05D010026 2.1e-11 72.8 116 50.0
Solyc03g114430.1 Solanum lycopersicum HOM05D007960 ORTHO05D010026 2.1e-11 72.8 122 39.3
Sopen03g033530 Solanum pennellii HOM05D007960 ORTHO05D010026 2.7e-11 72.4 88 47.7
Nitab4.5_0004342g0110 Nicotiana tabacum HOM05D007960 ORTHO05D010026 3.5e-11 72.0 64 59.4
Cc04_g07760 Coffea canephora HOM05D007960 ORTHO05D010026 4.6e-11 71.6 92 45.7
THA.LOC104812118 Tarenaya hassleriana HOM05D007960 ORTHO05D010026 4.6e-11 71.6 109 43.1
MD14G1219300 Malus domestica HOM05D007960 ORTHO05D010026 6.0e-11 71.2 75 53.3
FAN13G1649 Fragaria x ananassa HOM05D000227 ORTHO05D001491 7.8e-11 70.9 76 52.6
Phvul.003G179700 Phaseolus vulgaris HOM05D007960 ORTHO05D010026 7.8e-11 70.9 105 42.9
BraA07t30596Z Brassica rapa HOM05D007960 ORTHO05D010026 3.0e-10 68.9 73 47.9
VMungo1215G0525 Vigna mungo HOM05D007960 ORTHO05D010026 3.9e-10 68.6 117 38.5
Nitab4.5_0000646g0060 Nicotiana tabacum HOM05D007960 ORTHO05D010026 8.6e-10 67.4 64 57.8
PSO063G1775 Papaver somniferum HOM05D007960 ORTHO05D010026 1.5e-09 66.6 106 36.8
Lsat_1_v5_gn_1_15660 Lactuca sativa HOM05D007960 ORTHO05D010026 2.5e-09 65.9 103 41.7
Rhsim11G0054500 Rhododendron simsii HOM05D007960 ORTHO05D010026 2.5e-09 65.9 99 43.4
Rhsim08G0149000 Rhododendron simsii HOM05D007960 ORTHO05D010026 7.3e-09 64.3 108 40.7
Ah.11g047280 Amaranthus hybridus HOM05D007960 ORTHO05D010026 9.5e-09 63.9 55 58.2
Glyma.17G123900 Glycine max HOM05D007960 ORTHO05D010026 1.6e-08 63.2 74 47.3
PSO782G5681 Papaver somniferum HOM05D007960 ORTHO05D010026 2.1e-08 62.8 72 43.1
TWI14G0246 Tripterygium wilfordii HOM05D056897 ORTHO05D010026 2.1e-08 62.8 60 51.7
TWI15G0545 Tripterygium wilfordii HOM05D056897 ORTHO05D010026 4.7e-08 61.6 109 34.9
Dinv38606 Davidia involucrata HOM05D000227 ORTHO05D001491 4.0e-07 58.5 87 43.7
PGSC0003DMG400041876 Solanum tuberosum HOM05D007960 ORTHO05D010026 4.0e-07 58.5 88 44.3
ECA247G3950 Erigeron canadensis HOM05D007960 ORTHO05D010026 5.2e-07 58.2 95 36.8
ATR0730G198 Amborella trichopoda HOM05D007960 ORTHO05D010026 8.9e-07 57.4 67 38.8
Aqoxy3G03839 Aquilegia oxysepala HOM05D007960 ORTHO05D010026 3.4e-06 55.5 72 43.1
EL10Ac5g11226 Beta vulgaris HOM05D007960 ORTHO05D010026 3.4e-06 55.5 65 46.2
BcaC08g45611 Brassica carinata HOM05D007960 ORTHO05D010026 5.8e-06 54.7 65 41.5
PGR044G2003 Punica granatum HOM05D007960 ORTHO05D010026 5.8e-06 54.7 70 38.6
Glyma.05G015600 Glycine max HOM05D007960 ORTHO05D010026 9.9e-06 53.9 107 34.6


User provided reference genes

Program Settings