Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 1.6e-106 389.4 191 100.0
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 8.6e-105 383.6 191 98.4
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 4.3e-104 381.3 191 95.8
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 5.6e-104 380.9 191 95.8
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 9.5e-104 380.2 191 96.9
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 1.6e-103 379.4 191 95.8
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 1.6e-103 379.4 191 95.8
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 2.1e-103 379.0 191 95.3
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 4.7e-103 377.9 191 95.3
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.0e-102 376.7 189 95.2
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 1.0e-102 376.7 188 95.7
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 1.4e-102 376.3 191 94.2
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 1.8e-102 375.9 191 93.2
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 2.3e-102 375.6 191 94.8
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 4.0e-102 374.8 189 94.7
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 6.8e-102 374.0 191 94.2
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 6.8e-102 374.0 191 93.7
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 8.9e-102 373.6 191 94.2
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 8.9e-102 373.6 190 94.2
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 8.9e-102 373.6 190 94.2
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 1.2e-101 373.2 191 93.2
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 1.2e-101 373.2 191 93.2
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.5e-101 372.9 191 93.7
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 1.5e-101 372.9 190 93.7
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 1.5e-101 372.9 191 93.2
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 1.5e-101 372.9 191 93.2
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 2.6e-101 372.1 189 93.7
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 2.6e-101 372.1 191 92.7
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 3.4e-101 371.7 191 93.7
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 5.8e-101 370.9 189 93.1
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 5.8e-101 370.9 189 93.1
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 5.8e-101 370.9 189 93.1
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 5.8e-101 370.9 190 94.7
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 5.8e-101 370.9 191 92.1
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 9.8e-101 370.2 191 93.2
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 1.3e-100 369.8 189 93.7
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 1.3e-100 369.8 191 93.7
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 1.7e-100 369.4 189 92.6
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 2.9e-100 368.6 189 92.6
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 4.9e-100 367.9 191 91.6
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 4.9e-100 367.9 191 91.6
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 4.9e-100 367.9 191 93.2
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 6.4e-100 367.5 191 91.6
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 8.3e-100 367.1 191 91.6
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 8.3e-100 367.1 189 92.6
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 1.1e-99 366.7 189 92.1
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 1.9e-99 365.9 191 91.6
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 3.2e-99 365.2 191 92.7
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 9.2e-99 363.6 191 92.1
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 9.2e-99 363.6 195 91.8
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 9.2e-99 363.6 191 91.6
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 9.2e-99 363.6 191 90.1
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 1.2e-98 363.2 188 91.5
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 1.6e-98 362.8 191 92.1
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 1.6e-98 362.8 191 92.1
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 1.6e-98 362.8 191 92.1
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 1.6e-98 362.8 191 92.1
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 2.0e-98 362.5 191 91.1
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 2.0e-98 362.5 189 91.5
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 2.0e-98 362.5 188 93.1
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 3.5e-98 361.7 191 91.6
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 4.6e-98 361.3 191 89.0
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 6.0e-98 360.9 191 89.0
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 7.8e-98 360.5 191 90.6
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 1.0e-97 360.1 191 89.0
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 1.0e-97 360.1 191 89.5
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 1.3e-97 359.8 210 84.3
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 2.3e-97 359.0 216 82.4
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 3.9e-97 358.2 191 88.5
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 5.0e-97 357.8 189 89.9
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 6.6e-97 357.5 189 89.4
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 6.6e-97 357.5 191 89.5
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 1.5e-96 356.3 201 87.6
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 1.5e-96 356.3 201 86.1
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 3.3e-96 355.1 191 88.0
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 4.3e-96 354.8 188 89.9
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 7.3e-96 354.0 198 85.9
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 9.5e-96 353.6 188 88.8
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 9.5e-96 353.6 188 91.0
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 2.8e-95 352.1 232 77.2
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 3.6e-95 351.7 189 87.3
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 6.2e-95 350.9 191 86.4
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 8.1e-95 350.5 191 85.9
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 2.3e-94 349.0 191 85.9
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 3.1e-94 348.6 191 84.8
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 8.9e-94 347.1 188 86.2
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 8.9e-94 347.1 188 86.2
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 1.2e-93 346.7 183 90.7
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 1.2e-93 346.7 188 86.2
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 1.2e-93 346.7 214 79.9
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 1.5e-93 346.3 188 85.6
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 2.6e-93 345.5 193 87.0
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 7.5e-93 344.0 188 85.6
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 2.2e-92 342.4 191 83.8
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 2.2e-92 342.4 188 85.6
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 3.7e-92 341.7 191 82.7
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 1.0e-89 333.6 189 80.4
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 3.9e-89 331.6 191 79.6
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 3.9e-89 331.6 189 81.0
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 5.1e-89 331.3 181 89.0
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 5.1e-89 331.3 181 89.0
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 4.3e-88 328.2 173 91.3
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 2.8e-87 325.5 173 88.4
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 4.7e-87 324.7 191 78.0
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 6.2e-87 324.3 191 81.2
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 2.0e-85 319.3 188 77.1
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 9.9e-85 317.0 160 93.8
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.3e-84 316.6 188 77.1
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 1.7e-84 316.2 167 90.4
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 3.2e-83 312.0 160 91.2
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 1.5e-80 303.1 160 88.8
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 2.4e-78 295.8 161 88.8
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 4.6e-74 281.6 171 81.3
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 1.3e-71 273.5 209 68.4
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 2.2e-68 262.7 188 68.1
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 2.8e-63 245.7 140 83.6
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 4.0e-62 241.9 188 63.3
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.3e-60 236.9 183 63.9
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 1.8e-57 226.5 149 74.5
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 3.9e-57 225.3 113 92.9
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.9e-56 223.0 206 53.4
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 3.7e-55 218.8 129 84.5
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 2.2e-52 209.5 109 92.7
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 2.9e-52 209.1 109 91.7
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 6.5e-52 208.0 112 87.5
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 5.5e-51 204.9 158 63.9
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 2.7e-50 202.6 106 86.8
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 2.7e-50 202.6 109 90.8
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 1.3e-39 167.2 82 93.9
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 3.7e-39 165.6 82 92.7
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 8.2e-39 164.5 82 91.5
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 3.1e-38 162.5 80 93.8
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 2.6e-37 159.5 84 91.7
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 3.4e-37 159.1 83 88.0
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 3.6e-34 149.1 81 86.4
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 4.6e-34 148.7 156 46.8
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 3.9e-33 145.6 74 89.2
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 4.8e-31 138.7 71 90.1
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 1.8e-30 136.7 71 85.9
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 1.3e-28 130.6 87 77.0
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 3.6e-26 122.5 68 80.9
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 1.0e-25 120.9 68 80.9
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 1.0e-25 120.9 68 80.9
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 1.6e-18 97.1 51 82.4
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 1.4e-17 94.0 47 87.2
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 1.5e-11 73.9 38 84.2
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 1.5e-11 73.9 38 84.2
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 1.5e-11 73.9 38 84.2
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 1.5e-11 73.9 38 84.2
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 1.9e-11 73.6 37 86.5


User provided reference genes

Program Settings