Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G112200 Theobroma cacao HOM05D008563 ORTHO05D009802 1.1e-81 306.6 162 100.0
Duzib084G1352 Durio zibethinus HOM05D008563 ORTHO05D009802 2.2e-53 212.6 167 77.8
COL.COLO4_28804 Corchorus olitorius HOM05D008563 ORTHO05D009802 1.7e-32 143.3 177 62.7
CSS0034251 Camellia sinensis var. sinensis HOM05D008563 ORTHO05D009802 2.2e-21 106.3 164 44.5
CSS0042453 Camellia sinensis var. sinensis HOM05D008563 ORTHO05D009802 2.2e-21 106.3 164 44.5
Gohir.D03G099300 Gossypium hirsutum HOM05D008563 ORTHO05D009802 6.5e-21 104.8 175 46.9
Sed0012187 Sechium edule HOM05D008563 ORTHO05D009802 1.5e-20 103.6 163 45.4
Gorai.003G104300 Gossypium raimondii HOM05D008563 ORTHO05D009802 1.9e-20 103.2 170 50.0
Gorai.008G201100 Gossypium raimondii HOM05D008563 ORTHO05D009802 1.0e-18 97.4 151 49.0
Sed0005169 Sechium edule HOM05D008563 ORTHO05D009802 1.0e-18 97.4 165 44.2
CiPaw.15G117600 Carya illinoinensis HOM05D008563 ORTHO05D009802 4.0e-18 95.5 161 41.0
Gohir.D12G187700 Gossypium hirsutum HOM05D008563 ORTHO05D009802 1.3e-16 90.5 141 49.6
CSS0016849 Camellia sinensis var. sinensis HOM05D008563 ORTHO05D009802 4.8e-16 88.6 166 45.2
Gohir.A03G072700 Gossypium hirsutum HOM05D008563 ORTHO05D009802 6.3e-16 88.2 171 48.0
CSS0048960 Camellia sinensis var. sinensis HOM05D008563 ORTHO05D009802 1.2e-14 84.0 167 43.7
Atru.chr11.1516 Acer truncatum HOM05D018013 ORTHO05D013371 1.6e-14 83.6 170 41.8
Medtr4g112870 Medicago truncatula HOM05D008563 ORTHO05D009802 5.9e-14 81.6 159 44.0
ClCG06G015330 Citrullus lanatus HOM05D008563 ORTHO05D009802 1.7e-13 80.1 164 42.7
TPR.G2004 Trifolium pratense HOM05D008563 ORTHO05D009802 2.2e-13 79.7 160 41.9
Nn3g17602 Nelumbo nucifera HOM05D008563 ORTHO05D009802 5.0e-13 78.6 164 37.2
QL10p021529 Quercus lobata HOM05D008563 ORTHO05D009802 8.5e-13 77.8 166 41.6
TPR.G15318 Trifolium pratense HOM05D008563 ORTHO05D009802 8.5e-13 77.8 106 49.1
CiPaw.16G081000 Carya illinoinensis HOM05D008563 ORTHO05D009802 3.2e-12 75.9 165 40.6
Medtr2g058870 Medicago truncatula HOM05D008563 ORTHO05D009956 4.2e-12 75.5 169 40.2
Nn4g23603 Nelumbo nucifera HOM05D017299 ORTHO05D009802 5.5e-12 75.1 174 39.7
PSO478G2273 Papaver somniferum HOM05D042328 ORTHO05D009956 7.2e-12 74.7 157 40.1
Ca_02709_v3 Cicer arietinum L. HOM05D008563 ORTHO05D009956 1.2e-11 73.9 173 41.0
PSO017G1525 Papaver somniferum HOM05D042328 ORTHO05D009956 1.2e-11 73.9 157 39.5
Nitab4.5_0000646g0100 Nicotiana tabacum HOM05D014920 ORTHO05D009802 1.6e-11 73.6 154 40.9
Lj4g0009196 Lotus japonicus HOM05D008563 ORTHO05D009802 8.0e-11 71.2 163 42.9
PGSC0003DMG400004059 Solanum tuberosum HOM05D014920 ORTHO05D009802 8.0e-11 71.2 163 40.5
Manes.02G062300 Manihot esculenta HOM05D008889 ORTHO05D009956 1.0e-10 70.9 128 38.3
Phvul.008G023501 Phaseolus vulgaris HOM05D008889 ORTHO05D009956 1.8e-10 70.1 136 41.2
Sabra17G0089900 Salix brachista HOM05D008889 ORTHO05D009956 4.0e-10 68.9 130 41.5
Gohir.A12G184700 Gossypium hirsutum HOM05D008563 ORTHO05D009802 8.8e-10 67.8 57 64.9
Lj1g0007009 Lotus japonicus HOM05D008563 ORTHO05D009802 8.8e-10 67.8 147 39.5
Oeu054579.1 Olea europaea HOM05D011353 ORTHO05D009956 8.8e-10 67.8 140 40.0
unitig_21.g20864 Utricularia gibba HOM05D011353 ORTHO05D009956 8.8e-10 67.8 103 44.7
Sabra04G0073700 Salix brachista HOM05D008889 ORTHO05D009956 1.2e-09 67.4 108 46.3
Psat5g232520 Pisum sativum HOM05D008563 ORTHO05D009802 1.5e-09 67.0 87 49.4
Dinv36837 Davidia involucrata HOM05D008563 ORTHO05D009802 2.0e-09 66.6 153 41.8
Manes.01G024200 Manihot esculenta HOM05D008563 ORTHO05D009802 2.0e-09 66.6 166 40.4
CAN.G184.15 Capsicum annuum HOM05D011353 ORTHO05D009802 2.6e-09 66.2 148 42.6
Potri.004G108840 Populus trichocarpa HOM05D008889 ORTHO05D009956 2.6e-09 66.2 97 47.4
Peaxi162Scf00188g00068 Petunia axillaris HOM05D011353 ORTHO05D009802 5.7e-09 65.1 138 39.1
Aqoxy3G03789 Aquilegia oxysepala HOM05D018804 ORTHO05D009802 7.5e-09 64.7 155 37.4
Lsat_1_v5_gn_4_113140 Lactuca sativa HOM05D038017 ORTHO05D009802 7.5e-09 64.7 76 56.6
Manes.05G115400 Manihot esculenta HOM05D008563 ORTHO05D009802 7.5e-09 64.7 165 36.4
Potri.015G054900 Populus trichocarpa HOM05D008563 ORTHO05D009802 7.5e-09 64.7 165 37.6
RcHm_v2.0_Chr7g0184051 Rosa chinensis HOM05D021981 ORTHO05D009802 7.5e-09 64.7 122 44.3
unitig_744.g24288 Utricularia gibba HOM05D009227 ORTHO05D009956 1.7e-08 63.5 93 45.2
Nitab4.5_0002805g0110 Nicotiana tabacum HOM05D014920 ORTHO05D009802 2.2e-08 63.2 173 35.8
Prupe.5G211600 Prunus persica HOM05D008563 ORTHO05D009802 2.8e-08 62.8 104 42.3
TWI60G1620 Tripterygium wilfordii HOM05D014692 ORTHO05D014734 2.8e-08 62.8 80 48.8
Lsat_1_v5_gn_0_39381 Lactuca sativa HOM05D001719 ORTHO05D008373 3.7e-08 62.4 140 37.1
Hma1.2p1_0744F.1_g211700 Hydrangea macrophylla HOM05D008563 ORTHO05D009802 4.9e-08 62.0 162 36.4
Phvul.003G181300 Phaseolus vulgaris HOM05D024738 ORTHO05D009802 4.9e-08 62.0 161 38.5
Actinidia35060 Actinidia chinensis HOM05D014692 ORTHO05D014734 8.3e-08 61.2 96 46.9
Glyma.08G254600 Glycine max HOM05D008889 ORTHO05D009956 8.3e-08 61.2 129 35.7
Gohir.A08G052300 Gossypium hirsutum HOM05D008889 ORTHO05D009956 8.3e-08 61.2 96 40.6
Cc11_g11230 Coffea canephora HOM05D011353 ORTHO05D009956 1.1e-07 60.8 154 35.7
Phvul.009G190900 Phaseolus vulgaris HOM05D008563 ORTHO05D009802 1.1e-07 60.8 144 35.4
Sopen05g006040 Solanum pennellii HOM05D011353 ORTHO05D009802 1.1e-07 60.8 143 41.3
FAN13G1731 Fragaria x ananassa HOM05D021981 ORTHO05D009802 1.4e-07 60.5 126 42.1
Oeu024138.1 Olea europaea HOM05D011353 ORTHO05D009956 1.4e-07 60.5 133 36.8
PGSC0003DMG400025096 Solanum tuberosum HOM05D011353 ORTHO05D009802 1.4e-07 60.5 147 40.8
Ciclev10022670m.g Citrus clementina HOM05D008563 ORTHO05D009802 1.8e-07 60.1 107 43.9
FvH4_6g45950 Fragaria vesca HOM05D008889 ORTHO05D009956 1.8e-07 60.1 125 39.2
FAN05G4365 Fragaria x ananassa HOM05D008889 ORTHO05D009956 1.8e-07 60.1 125 39.2
FAN14G5446 Fragaria x ananassa HOM05D008889 ORTHO05D009956 1.8e-07 60.1 125 39.2
Lalb_Chr04g0258271 Lupinus albus HOM05D008889 ORTHO05D009956 1.8e-07 60.1 128 35.9
FAN08G2886 Fragaria x ananassa HOM05D021981 ORTHO05D009802 2.4e-07 59.7 127 41.7
PGSC0003DMG400024516 Solanum tuberosum HOM05D014920 ORTHO05D009802 2.4e-07 59.7 163 38.0
AT5G38790 Arabidopsis thaliana HOM05D009227 ORTHO05D009956 3.1e-07 59.3 73 49.3
Potri.017G107000 Populus trichocarpa HOM05D008889 ORTHO05D009956 3.1e-07 59.3 146 39.7
RcHm_v2.0_Chr2g0164181 Rosa chinensis HOM05D008889 ORTHO05D009956 3.1e-07 59.3 122 39.3
FAN09G2052 Fragaria x ananassa HOM05D008889 ORTHO05D009956 4.1e-07 58.9 125 39.2
FAN17G2419 Fragaria x ananassa HOM05D014692 ORTHO05D014734 4.1e-07 58.9 126 39.7
Nitab4.5_0004190g0010 Nicotiana tabacum HOM05D014920 ORTHO05D009802 5.4e-07 58.5 168 36.3
Sabra15G0079800 Salix brachista HOM05D008563 ORTHO05D009802 5.4e-07 58.5 153 40.5
Solyc05g010270.1 Solanum lycopersicum HOM05D011353 ORTHO05D009802 5.4e-07 58.5 143 40.6
THA.LOC104804610 Tarenaya hassleriana HOM05D009919 ORTHO05D012044 5.4e-07 58.5 90 47.8
Ca_23534_v3 Cicer arietinum L. HOM05D008889 ORTHO05D009956 7.0e-07 58.2 138 39.1
FvH4_5g13090 Fragaria vesca HOM05D021981 ORTHO05D009802 7.0e-07 58.2 127 40.9
FAN02G0304 Fragaria x ananassa HOM05D008889 ORTHO05D009956 7.0e-07 58.2 125 38.4
FAN18G3782 Fragaria x ananassa HOM05D021981 ORTHO05D009802 7.0e-07 58.2 127 40.9
Psat4g045520 Pisum sativum HOM05D008563 ORTHO05D009802 7.0e-07 58.2 159 37.1
Carub.0007s3707 Capsella rubella HOM05D009227 ORTHO05D009956 9.2e-07 57.8 112 42.9
Cpa.g.sc3.202 Carica papaya HOM05D014920 ORTHO05D009802 1.2e-06 57.4 86 47.7
CiPaw.04G050600 Carya illinoinensis HOM05D008889 ORTHO05D009956 1.2e-06 57.4 129 40.3
Manes.01G105700 Manihot esculenta HOM05D008889 ORTHO05D009956 1.2e-06 57.4 120 40.8
QL03p047692 Quercus lobata HOM05D017299 ORTHO05D013371 1.2e-06 57.4 158 36.7
Solyc06g069340.1 Solanum lycopersicum HOM05D014920 ORTHO05D009802 1.2e-06 57.4 158 36.1
THA.LOC104819391 Tarenaya hassleriana HOM05D009919 ORTHO05D012044 1.2e-06 57.4 76 47.4
Lalb_Chr10g0092501 Lupinus albus HOM05D008889 ORTHO05D009956 1.6e-06 57.0 84 46.4
Thecc.04G112500 Theobroma cacao HOM05D008889 ORTHO05D009956 2.7e-06 56.2 103 35.9
ECA246G0528 Erigeron canadensis HOM05D008563 ORTHO05D009802 3.5e-06 55.8 165 40.0
Gorai.004G064000 Gossypium raimondii HOM05D009227 ORTHO05D009956 3.5e-06 55.8 83 42.2
Atru.chr9.645 Acer truncatum HOM05D008563 ORTHO05D009802 4.5e-06 55.5 33 72.7
HanXRQChr09g0270551 Helianthus annuus HOM05D038017 ORTHO05D009802 4.5e-06 55.5 80 53.8
THA.LOC104805540 Tarenaya hassleriana HOM05D009227 ORTHO05D009956 4.5e-06 55.5 80 42.5
BcaB07g30061 Brassica carinata HOM05D009227 ORTHO05D009956 5.9e-06 55.1 87 46.0
FAN22G0750 Fragaria x ananassa HOM05D014692 ORTHO05D014734 5.9e-06 55.1 127 41.7
BcaC06g33727 Brassica carinata HOM05D009227 ORTHO05D009956 7.7e-06 54.7 103 41.7
C07p38630 Brassica napus HOM05D009227 ORTHO05D009956 7.7e-06 54.7 103 41.7
BolC7t44384H Brassica oleracea HOM05D009227 ORTHO05D009956 7.7e-06 54.7 103 41.7


User provided reference genes

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