Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G110900 Theobroma cacao HOM05D007277 ORTHO05D006336 5.5e-87 324.3 170 100.0
Thecc.03G111200 Theobroma cacao HOM05D007277 ORTHO05D006336 1.2e-70 270.0 150 93.3
COL.COLO4_28831 Corchorus olitorius HOM05D007277 ORTHO05D006336 8.0e-54 214.2 154 79.2
Gohir.A07G058000 Gossypium hirsutum HOM05D007277 ORTHO05D006336 4.1e-50 201.8 170 64.7
Gohir.D07G062800 Gossypium hirsutum HOM05D007277 ORTHO05D006336 2.0e-49 199.5 170 64.7
Gorai.001G066300 Gossypium raimondii HOM05D007277 ORTHO05D006336 5.6e-47 191.4 172 64.0
Cpa.g.sc3.199 Carica papaya HOM05D007277 ORTHO05D006336 3.0e-24 115.9 136 52.2
QL07p042983 Quercus lobata HOM05D007277 ORTHO05D006336 2.0e-20 103.2 157 47.1
Cpa.g.sc3.198 Carica papaya HOM05D007277 ORTHO05D006336 1.7e-19 100.1 145 44.1
Cpa.g.sc3.209 Carica papaya HOM05D007277 ORTHO05D006336 2.9e-19 99.4 120 52.5
FAN18G2501 Fragaria x ananassa HOM05D007277 ORTHO05D006336 4.9e-19 98.6 157 43.9
Cpa.g.sc3.210 Carica papaya HOM05D007277 ORTHO05D006336 6.4e-19 98.2 145 44.8
Haze_24862 Corylus avellana HOM05D007277 ORTHO05D006336 8.4e-19 97.8 149 45.6
QL07p042995 Quercus lobata HOM05D007277 ORTHO05D006336 8.4e-19 97.8 184 40.8
FvH4_5g13230 Fragaria vesca HOM05D007277 ORTHO05D006336 3.2e-18 95.9 157 42.7
FvH4_5g13170 Fragaria vesca HOM05D007277 ORTHO05D006336 5.4e-18 95.1 157 43.3
Prupe.6G011800 Prunus persica HOM05D007277 ORTHO05D006336 5.4e-18 95.1 143 37.8
Manes.05G115300 Manihot esculenta HOM05D007277 ORTHO05D006336 7.1e-18 94.7 114 48.2
QL07p042879 Quercus lobata HOM05D007277 ORTHO05D006336 9.3e-18 94.4 169 41.4
QL07p042903 Quercus lobata HOM05D007277 ORTHO05D006336 1.2e-17 94.0 138 45.7
FvH4_5g13140 Fragaria vesca HOM05D007277 ORTHO05D006336 1.6e-17 93.6 158 43.7
FAN18G3246 Fragaria x ananassa HOM05D007277 ORTHO05D006336 2.1e-17 93.2 158 43.7
QL07p042874 Quercus lobata HOM05D007277 ORTHO05D006336 2.1e-17 93.2 163 42.9
FAN18G2870 Fragaria x ananassa HOM05D000423 ORTHO05D000284 2.7e-17 92.8 153 43.1
QL07p042908 Quercus lobata HOM05D007277 ORTHO05D006336 3.5e-17 92.4 170 38.8
FvH4_5g13130 Fragaria vesca HOM05D007277 ORTHO05D006336 6.0e-17 91.7 160 41.2
QL07p042928 Quercus lobata HOM05D007277 ORTHO05D006336 7.8e-17 91.3 177 40.7
FAN08G1790 Fragaria x ananassa HOM05D007277 ORTHO05D006336 1.0e-16 90.9 157 43.3
FAN18G0686 Fragaria x ananassa HOM05D007277 ORTHO05D006336 1.0e-16 90.9 157 41.4
Cfa021203 Carpinus fangiana HOM05D007277 ORTHO05D006336 2.3e-16 89.7 153 42.5
Prupe.1G109400 Prunus persica HOM05D007277 ORTHO05D006336 2.3e-16 89.7 131 38.9
FvH4_5g13221 Fragaria vesca HOM05D007277 ORTHO05D006336 6.6e-16 88.2 104 48.1
FAN08G1781 Fragaria x ananassa HOM05D007277 ORTHO05D006336 6.6e-16 88.2 109 46.8
Haze_24863 Corylus avellana HOM05D000010 ORTHO05D006336 8.7e-16 87.8 131 44.3
MD11G1013400 Malus domestica HOM05D007277 ORTHO05D006336 1.1e-15 87.4 137 40.1
Ciclev10024167m.g Citrus clementina HOM05D007277 ORTHO05D006336 1.5e-15 87.0 155 38.7
Prupe.6G011200 Prunus persica HOM05D007277 ORTHO05D006336 2.5e-15 86.3 112 40.2
RcHm_v2.0_Chr7g0241491 Rosa chinensis HOM05D007277 ORTHO05D006336 5.6e-15 85.1 144 38.2
MD11G1013900 Malus domestica HOM05D007277 ORTHO05D006336 7.3e-15 84.7 119 42.0
QL10p051898 Quercus lobata HOM05D007277 ORTHO05D006336 1.3e-14 84.0 144 38.2
Haze_27687 Corylus avellana HOM05D007277 ORTHO05D006336 1.6e-14 83.6 143 43.4
Haze_27688 Corylus avellana HOM05D007277 ORTHO05D006336 1.6e-14 83.6 143 43.4
MD03G1011400 Malus domestica HOM05D007277 ORTHO05D006336 2.1e-14 83.2 114 40.4
MD03G1009100 Malus domestica HOM05D007277 ORTHO05D006336 2.8e-14 82.8 163 35.0
QL09p028728 Quercus lobata HOM05D007277 ORTHO05D006336 3.6e-14 82.4 195 34.4
Ciclev10029817m.g Citrus clementina HOM05D007277 ORTHO05D006336 8.1e-14 81.3 155 36.8
DCAR_010189 Daucus carota HOM05D007277 ORTHO05D006336 1.8e-13 80.1 110 42.7
Cfa002615 Carpinus fangiana HOM05D007277 ORTHO05D006336 3.1e-13 79.3 161 41.6
MD14G1141800 Malus domestica HOM05D007277 ORTHO05D006336 3.1e-13 79.3 107 40.2
Cfa002614 Carpinus fangiana HOM05D007277 ORTHO05D006336 5.3e-13 78.6 106 49.1
FAN13G2869 Fragaria x ananassa HOM05D007277 ORTHO05D006336 5.3e-13 78.6 107 42.1
MD03G1009500 Malus domestica HOM05D007277 ORTHO05D006336 9.0e-13 77.8 107 43.9
FvH4_5g13190 Fragaria vesca HOM05D007277 ORTHO05D013598 1.5e-12 77.0 139 41.7
MD03G1010100 Malus domestica HOM05D007277 ORTHO05D006336 1.5e-12 77.0 118 37.3
QL02p080387 Quercus lobata HOM05D007277 ORTHO05D006336 1.5e-12 77.0 126 39.7
Ciclev10023402m.g Citrus clementina HOM05D007277 ORTHO05D006336 5.8e-12 75.1 116 37.9
FAN08G3205 Fragaria x ananassa HOM05D007277 ORTHO05D006336 5.8e-12 75.1 121 43.8
Prupe.6G011700 Prunus persica HOM05D007277 ORTHO05D006336 5.8e-12 75.1 114 38.6
Ciclev10023444m.g Citrus clementina HOM05D007277 ORTHO05D006336 7.6e-12 74.7 116 39.7
Ciclev10023596m.g Citrus clementina HOM05D010635 ORTHO05D006336 7.6e-12 74.7 150 35.3
Haze_24866 Corylus avellana HOM05D007277 ORTHO05D006336 9.9e-12 74.3 143 42.7
PGSC0003DMG400024676 Solanum tuberosum HOM05D007277 ORTHO05D006336 1.3e-11 73.9 133 39.8
Atru.chr4.1305 Acer truncatum HOM05D010298 ORTHO05D006336 3.8e-11 72.4 155 33.5
Sopen03g033720 Solanum pennellii HOM05D007277 ORTHO05D006336 3.8e-11 72.4 150 36.0
Atru.chr4.1303 Acer truncatum HOM05D010298 ORTHO05D012539 4.9e-11 72.0 164 32.9
QL10p012835 Quercus lobata HOM05D007277 ORTHO05D006336 4.9e-11 72.0 151 35.8
Atru.chr12.1464 Acer truncatum HOM05D007277 ORTHO05D006336 6.4e-11 71.6 139 35.3
Potri.017G019000 Populus trichocarpa HOM05D010635 ORTHO05D006336 6.4e-11 71.6 109 36.7
Ciclev10024327m.g Citrus clementina HOM05D007277 ORTHO05D006336 8.4e-11 71.2 92 43.5
QL02p080510 Quercus lobata HOM05D007277 ORTHO05D006336 8.4e-11 71.2 179 33.0
Atru.chr9.2085 Acer truncatum HOM05D007277 ORTHO05D006336 1.1e-10 70.9 135 37.0
Solyc03g114650.3 Solanum lycopersicum HOM05D007277 ORTHO05D006336 1.1e-10 70.9 139 36.7
ClCG04G011470 Citrullus lanatus HOM05D014519 ORTHO05D006336 1.9e-10 70.1 89 46.1
Dinv38624 Davidia involucrata HOM05D007277 ORTHO05D006336 7.1e-10 68.2 113 42.5
ClCG04G011480 Citrullus lanatus HOM05D014519 ORTHO05D006336 9.3e-10 67.8 106 42.5
Sed0012100 Sechium edule HOM05D014519 ORTHO05D006336 9.3e-10 67.8 130 39.2
QL10p052020 Quercus lobata HOM05D007277 ORTHO05D006336 1.6e-09 67.0 111 39.6
Potri.017G019932 Populus trichocarpa HOM05D010635 ORTHO05D006336 2.1e-09 66.6 170 30.6
Rhsim12G0165400 Rhododendron simsii HOM05D007277 ORTHO05D006336 4.6e-09 65.5 112 42.9
PGSC0003DMG400024518 Solanum tuberosum HOM05D007277 ORTHO05D006336 4.6e-09 65.5 162 35.2
Sed0019610 Sechium edule HOM05D014519 ORTHO05D006336 6.0e-09 65.1 119 37.8
Dinv36831 Davidia involucrata HOM05D007277 ORTHO05D006336 1.0e-08 64.3 103 42.7
MD12G1151900 Malus domestica HOM05D007277 ORTHO05D006336 1.8e-08 63.5 85 43.5
FvH4_5g13220 Fragaria vesca HOM05D007277 ORTHO05D006336 2.3e-08 63.2 132 38.6
Potri.017G018901 Populus trichocarpa HOM05D010635 ORTHO05D006336 3.0e-08 62.8 113 33.6
Potri.017G022262 Populus trichocarpa HOM05D010635 ORTHO05D006336 3.0e-08 62.8 107 34.6
MD12G1151700 Malus domestica HOM05D007277 ORTHO05D006336 5.1e-08 62.0 107 34.6
Potri.017G021796 Populus trichocarpa HOM05D010635 ORTHO05D006336 5.1e-08 62.0 107 33.6
Sabra17G0002100 Salix brachista HOM05D010635 ORTHO05D006336 1.1e-07 60.8 167 28.7
CSS0000915 Camellia sinensis var. sinensis HOM05D007277 ORTHO05D006336 1.5e-07 60.5 104 37.5
TAR636G1074 Trochodendron aralioides HOM05D012741 ORTHO05D006336 1.5e-07 60.5 109 38.5
TAR636G3203 Trochodendron aralioides HOM05D012741 ORTHO05D006336 1.5e-07 60.5 109 40.4
Actinidia10434 Actinidia chinensis HOM05D007277 ORTHO05D006336 1.9e-07 60.1 131 37.4
Sabra17G0014600 Salix brachista HOM05D010635 ORTHO05D006336 1.9e-07 60.1 167 28.7
TAR371G0786 Trochodendron aralioides HOM05D012741 ORTHO05D006336 1.9e-07 60.1 114 36.8
ClCG04G011490 Citrullus lanatus HOM05D014519 ORTHO05D006336 3.3e-07 59.3 107 38.3
Actinidia22592 Actinidia chinensis HOM05D007277 ORTHO05D006336 4.3e-07 58.9 155 31.0
TAR636G2604 Trochodendron aralioides HOM05D012741 ORTHO05D006336 9.6e-07 57.8 122 36.9
Haze_02030 Corylus avellana HOM05D007277 ORTHO05D006336 1.6e-06 57.0 79 45.6
TAR636G1532 Trochodendron aralioides HOM05D012741 ORTHO05D006336 1.6e-06 57.0 104 38.5
Actinidia24268 Actinidia chinensis HOM05D007277 ORTHO05D006336 2.8e-06 56.2 152 29.6
Sabra07G0108200 Salix brachista HOM05D010635 ORTHO05D006336 3.7e-06 55.8 149 31.5
Sed0003907 Sechium edule HOM05D014519 ORTHO05D006336 3.7e-06 55.8 122 33.6


User provided reference genes

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