Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G106900 Theobroma cacao HOM05D000002 ORTHO05D004433 2.3e-125 452.2 227 100.0
Sopen09g027930 Solanum pennellii HOM05D000002 ORTHO05D004433 8.0e-41 171.4 189 52.9
Nn8g40511 Nelumbo nucifera HOM05D000002 ORTHO05D000001 6.8e-32 141.7 317 32.8
Nn5g27722 Nelumbo nucifera HOM05D000002 ORTHO05D004433 8.5e-27 124.8 84 73.8
Sopen03g008290 Solanum pennellii HOM05D000002 ORTHO05D004433 4.7e-25 119.0 177 44.1
Nn8g39416 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.4e-24 117.5 307 30.9
Nn4g25779 Nelumbo nucifera HOM05D000002 ORTHO05D004433 4.0e-24 115.9 78 70.5
Sopen03g007650 Solanum pennellii HOM05D000002 ORTHO05D004433 5.2e-24 115.5 84 70.2
Cpa.g.sc11.103 Carica papaya HOM05D000002 ORTHO05D004433 8.8e-24 114.8 78 69.2
Nn1g09492 Nelumbo nucifera HOM05D000002 ORTHO05D004433 1.3e-22 110.9 78 69.2
CAN.G350.7 Capsicum annuum HOM05D000002 ORTHO05D004433 2.2e-22 110.2 69 79.7
Glyma.01G070601 Glycine max HOM05D000002 ORTHO05D004433 1.2e-20 104.4 82 57.3
Nn1g02075 Nelumbo nucifera HOM05D000002 ORTHO05D004433 2.7e-20 103.2 78 64.1
Nn3g20324 Nelumbo nucifera HOM05D000002 ORTHO05D004433 1.0e-19 101.3 81 61.7
Nn4g23986 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.7e-19 100.5 78 62.8
Nn8g40101 Nelumbo nucifera HOM05D000002 ORTHO05D004433 1.7e-19 100.5 287 33.1
PSO675G3339 Papaver somniferum HOM05D000002 ORTHO05D004433 1.9e-18 97.1 82 52.4
Nn4g24889 Nelumbo nucifera HOM05D000002 ORTHO05D004433 1.2e-17 94.4 62 72.6
Nn1g03238 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.6e-17 94.0 79 59.5
ECA246G5102 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.8e-16 90.5 309 23.6
Thecc.07G149400 Theobroma cacao HOM05D005571 ORTHO05D004433 1.8e-16 90.5 61 77.0
SHI45609 Sapria himalayana HOM05D000002 ORTHO05D000001 5.2e-16 89.0 79 51.9
Oeu035997.1 Olea europaea HOM05D000002 ORTHO05D004433 6.8e-16 88.6 78 53.8
Oeu001115.1 Olea europaea HOM05D000002 ORTHO05D004433 1.2e-15 87.8 78 52.6
Nn1g02545 Nelumbo nucifera HOM05D000002 ORTHO05D004433 2.6e-15 86.7 51 80.4
ECA233G1874 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.4e-15 85.9 80 50.0
ECA240G4274 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.4e-15 85.9 80 50.0
SHI10489 Sapria himalayana HOM05D000002 ORTHO05D004433 4.4e-15 85.9 78 51.3
SHI14609 Sapria himalayana HOM05D000002 ORTHO05D000001 4.4e-15 85.9 79 50.6
MD01G1096700 Malus domestica HOM05D000002 ORTHO05D000001 7.5e-15 85.1 82 48.8
Oeu006707.1 Olea europaea HOM05D000002 ORTHO05D004433 7.5e-15 85.1 74 56.8
SHI32313 Sapria himalayana HOM05D000002 ORTHO05D004433 7.5e-15 85.1 79 50.6
SHI05549 Sapria himalayana HOM05D000002 ORTHO05D004433 1.3e-14 84.3 82 48.8
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 1.7e-14 84.0 78 51.3
SHI43060 Sapria himalayana HOM05D000002 ORTHO05D004433 1.7e-14 84.0 79 50.6
SHI44323 Sapria himalayana HOM05D000002 ORTHO05D000001 1.7e-14 84.0 79 49.4
CAN.G1829.1 Capsicum annuum HOM05D000583 ORTHO05D004433 2.2e-14 83.6 202 31.2
ECA246G2496 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.2e-14 83.6 80 48.8
ECA248G0687 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.2e-14 83.6 78 47.4
ECA234G1536 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.9e-14 83.2 80 48.8
ECA234G3440 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.9e-14 83.2 82 46.3
ECA240G0479 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.9e-14 83.2 82 48.8
SHI32919 Sapria himalayana HOM05D000002 ORTHO05D004433 2.9e-14 83.2 79 49.4
Oeu034209.1 Olea europaea HOM05D000002 ORTHO05D004433 3.7e-14 82.8 78 47.4
ECA246G0537 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.9e-14 82.4 78 48.7
SHI18328 Sapria himalayana HOM05D000002 ORTHO05D000001 4.9e-14 82.4 79 49.4
SHI38827 Sapria himalayana HOM05D000002 ORTHO05D004433 6.4e-14 82.0 79 48.1
TAR610G0003 Trochodendron aralioides HOM05D000002 ORTHO05D000001 6.4e-14 82.0 78 47.4
ECA236G5067 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.3e-14 81.6 80 45.0
ECA247G3536 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.3e-14 81.6 82 45.1
SHI49936 Sapria himalayana HOM05D000002 ORTHO05D000001 8.3e-14 81.6 79 48.1
SHI51732 Sapria himalayana HOM05D000002 ORTHO05D000001 8.3e-14 81.6 76 51.3
ECA246G3093 Erigeron canadensis HOM05D001467 ORTHO05D001214 1.1e-13 81.3 82 43.9
MD14G1034300 Malus domestica HOM05D000038 ORTHO05D004433 1.8e-13 80.5 81 46.9
SHI04823 Sapria himalayana HOM05D000002 ORTHO05D004433 1.8e-13 80.5 79 48.1
ECA238G3349 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.2e-13 79.7 80 46.2
ECA238G4719 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.1e-13 79.3 80 46.2
Gohir.D10G094150 Gossypium hirsutum HOM05D000002 ORTHO05D004433 5.4e-13 79.0 79 48.1
ECA238G4301 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.0e-13 78.6 82 46.3
SHI04168 Sapria himalayana HOM05D000002 ORTHO05D004433 7.0e-13 78.6 79 46.8
Ah.04g159010 Amaranthus hybridus HOM05D000002 ORTHO05D004433 9.2e-13 78.2 80 43.8
ECA233G2777 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.2e-12 77.8 332 24.1
ECA248G3794 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.2e-12 77.8 78 43.6
Ah.16g106880 Amaranthus hybridus HOM05D000002 ORTHO05D004433 1.6e-12 77.4 81 42.0
Sopen00g007880 Solanum pennellii HOM05D000002 ORTHO05D004433 1.6e-12 77.4 79 45.6
Ah.13g077590 Amaranthus hybridus HOM05D000002 ORTHO05D000001 2.7e-12 76.6 80 42.5
Nn2g15808 Nelumbo nucifera HOM05D000006 ORTHO05D004433 2.7e-12 76.6 207 29.5
Ah.01g008310 Amaranthus hybridus HOM05D000002 ORTHO05D004433 3.5e-12 76.3 80 42.5
Ah.13g069620 Amaranthus hybridus HOM05D000002 ORTHO05D004433 3.5e-12 76.3 80 42.5
ECA248G0669 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.5e-12 76.3 76 46.1
Nn2g13681 Nelumbo nucifera HOM05D000002 ORTHO05D004433 4.6e-12 75.9 78 44.9
Oeu055579.1 Olea europaea HOM05D000002 ORTHO05D004433 4.6e-12 75.9 78 46.2
Oeu022773.1 Olea europaea HOM05D000002 ORTHO05D004433 5.9e-12 75.5 78 47.4
Cc04_g10140 Coffea canephora HOM05D000002 ORTHO05D004433 7.8e-12 75.1 92 43.5
SHI21269 Sapria himalayana HOM05D000002 ORTHO05D004433 7.8e-12 75.1 82 43.9
Ah.03g145180 Amaranthus hybridus HOM05D000002 ORTHO05D004433 1.0e-11 74.7 80 41.2
Nn2g15606 Nelumbo nucifera HOM05D000006 ORTHO05D004433 1.3e-11 74.3 78 51.3
Nn5g30038 Nelumbo nucifera HOM05D000002 ORTHO05D004433 1.3e-11 74.3 47 72.3
ECA234G3041 Erigeron canadensis HOM05D001549 ORTHO05D003098 1.7e-11 73.9 78 42.3
SHI45691 Sapria himalayana HOM05D000002 ORTHO05D004433 1.7e-11 73.9 78 44.9
FvH4_5g31431 Fragaria vesca HOM05D000002 ORTHO05D004433 2.3e-11 73.6 91 38.5
Ah.16g108610 Amaranthus hybridus HOM05D000002 ORTHO05D004433 3.0e-11 73.2 80 41.2
Thecc.06G148700 Theobroma cacao HOM05D000002 ORTHO05D004433 6.6e-11 72.0 57 66.7
SHI10029 Sapria himalayana HOM05D000002 ORTHO05D004433 8.6e-11 71.6 67 50.7
Cc05_g05430 Coffea canephora HOM05D000002 ORTHO05D004433 1.5e-10 70.9 91 37.4
ECA233G2071 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.5e-10 70.9 76 39.5
SHI16256 Sapria himalayana HOM05D000002 ORTHO05D004433 1.5e-10 70.9 61 52.5
SHI18425 Sapria himalayana HOM05D000002 ORTHO05D004433 1.5e-10 70.9 67 49.3
RcHm_v2.0_Chr3g0481931 Rosa chinensis HOM05D000002 ORTHO05D000001 1.9e-10 70.5 91 38.5
SHI22389 Sapria himalayana HOM05D000002 ORTHO05D004433 1.9e-10 70.5 93 39.8
QL05p063530 Quercus lobata HOM05D000002 ORTHO05D004433 2.5e-10 70.1 155 29.7
Sopen09g011970 Solanum pennellii HOM05D008571 ORTHO05D011280 4.3e-10 69.3 82 39.0
SHI00406 Sapria himalayana HOM05D000002 ORTHO05D004433 5.6e-10 68.9 67 49.3
SHI06746 Sapria himalayana HOM05D000002 ORTHO05D004433 5.6e-10 68.9 122 34.4
SHI02070 Sapria himalayana HOM05D000002 ORTHO05D000001 9.5e-10 68.2 135 32.6
SHI39436 Sapria himalayana HOM05D000002 ORTHO05D000001 9.5e-10 68.2 99 40.4
SHI39438 Sapria himalayana HOM05D000002 ORTHO05D000001 9.5e-10 68.2 99 40.4
Sopen09g028980 Solanum pennellii HOM05D000002 ORTHO05D004433 9.5e-10 68.2 93 35.5
Gohir.D08G274150 Gossypium hirsutum HOM05D000002 ORTHO05D004433 1.2e-09 67.8 86 36.0
Gorai.004G292700 Gossypium raimondii HOM05D000002 ORTHO05D004433 1.2e-09 67.8 86 36.0
SHI10030 Sapria himalayana HOM05D000002 ORTHO05D000001 1.2e-09 67.8 122 34.4
SHI10488 Sapria himalayana HOM05D000002 ORTHO05D000001 1.2e-09 67.8 122 34.4
SHI32918 Sapria himalayana HOM05D000002 ORTHO05D000001 1.2e-09 67.8 121 34.7
SHI43075 Sapria himalayana HOM05D000002 ORTHO05D000001 1.6e-09 67.4 123 35.8
CSS0046925 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004433 2.1e-09 67.0 280 22.1
Glyma.07G117100 Glycine max HOM05D000002 ORTHO05D004433 2.8e-09 66.6 69 42.0
Nn5g30039 Nelumbo nucifera HOM05D000002 ORTHO05D004433 3.6e-09 66.2 41 73.2
Oeu050054.1 Olea europaea HOM05D000002 ORTHO05D004433 4.7e-09 65.9 78 41.0
CAN.G401.9 Capsicum annuum HOM05D000002 ORTHO05D004433 8.0e-09 65.1 73 38.4
Oeu003015.1 Olea europaea HOM05D000002 ORTHO05D004433 8.0e-09 65.1 69 40.6
RcHm_v2.0_Chr5g0017901 Rosa chinensis HOM05D000002 ORTHO05D000001 8.0e-09 65.1 89 39.3
PGSC0003DMG400033163 Solanum tuberosum HOM05D000002 ORTHO05D004433 8.0e-09 65.1 78 35.9
GSVIVG01017482001 Vitis vinifera HOM05D000002 ORTHO05D004433 8.0e-09 65.1 112 33.9
ECA232G4651 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.4e-08 64.3 73 38.4
Sopen11g022850 Solanum pennellii HOM05D000002 ORTHO05D004433 1.4e-08 64.3 95 31.6
SHI00405 Sapria himalayana HOM05D000002 ORTHO05D000001 1.8e-08 63.9 123 35.0
SHI37106 Sapria himalayana HOM05D000002 ORTHO05D000001 1.8e-08 63.9 122 32.8
Oeu033717.1 Olea europaea HOM05D000002 ORTHO05D004433 2.3e-08 63.5 54 48.1
Oeu051241.1 Olea europaea HOM05D000002 ORTHO05D004433 2.3e-08 63.5 68 45.6
Sopen11g022370 Solanum pennellii HOM05D000036 ORTHO05D005472 2.3e-08 63.5 82 36.6
SHI47859 Sapria himalayana HOM05D000002 ORTHO05D004433 3.1e-08 63.2 133 33.1
Prupe.7G032100 Prunus persica HOM05D000002 ORTHO05D004433 4.0e-08 62.8 66 40.9
SHI27796 Sapria himalayana HOM05D000002 ORTHO05D000001 4.0e-08 62.8 122 32.8
Nn1g06847 Nelumbo nucifera HOM05D000002 ORTHO05D004433 5.2e-08 62.4 77 39.0
CSS0018245 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.9e-08 61.6 75 40.0
ECA247G1586 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.9e-08 61.6 250 22.8
PGR044G2365 Punica granatum HOM05D000097 ORTHO05D000041 1.2e-07 61.2 84 34.5
Dinv02026 Davidia involucrata HOM05D028709 ORTHO05D004433 1.5e-07 60.8 77 32.5
SHI07649 Sapria himalayana HOM05D000002 ORTHO05D004433 1.5e-07 60.8 122 32.0
MD01G1222200 Malus domestica HOM05D000002 ORTHO05D004433 2.0e-07 60.5 103 29.1
SHI45690 Sapria himalayana HOM05D000002 ORTHO05D000001 2.0e-07 60.5 121 32.2
BolC8t49584H Brassica oleracea HOM05D000002 ORTHO05D004433 2.6e-07 60.1 82 34.1
SHI47495 Sapria himalayana HOM05D000002 ORTHO05D000001 3.4e-07 59.7 121 32.2
SHI32312 Sapria himalayana HOM05D000002 ORTHO05D000001 5.8e-07 58.9 122 34.4
ECA246G4710 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.8e-07 58.2 93 31.2
SHI18424 Sapria himalayana HOM05D000002 ORTHO05D004433 9.8e-07 58.2 122 31.1
Oeu026048.1 Olea europaea HOM05D000002 ORTHO05D000001 1.3e-06 57.8 115 30.4
SHI04169 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-06 57.8 122 32.8
Oeu032225.1 Olea europaea HOM05D000002 ORTHO05D004433 1.7e-06 57.4 125 28.8
PGR044G1025 Punica granatum HOM05D000097 ORTHO05D000041 2.9e-06 56.6 77 37.7
CiPaw.08G098800 Carya illinoinensis HOM05D000002 ORTHO05D004433 3.7e-06 56.2 82 31.7
CAN.G492.33 Capsicum annuum HOM05D000002 ORTHO05D004433 4.9e-06 55.8 94 31.9
FAN18G4446 Fragaria x ananassa HOM05D000097 ORTHO05D000041 4.9e-06 55.8 75 40.0
SHI12756 Sapria himalayana HOM05D000002 ORTHO05D004433 4.9e-06 55.8 79 41.8
ECA247G2369 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.4e-06 55.5 93 35.5
FAN04G1606 Fragaria x ananassa HOM05D000097 ORTHO05D000041 6.4e-06 55.5 76 38.2
FAN04G1975 Fragaria x ananassa HOM05D001790 ORTHO05D007425 6.4e-06 55.5 76 38.2
SHI03937 Sapria himalayana HOM05D000002 ORTHO05D004433 6.4e-06 55.5 50 54.0
PGSC0003DMG400023646 Solanum tuberosum HOM05D000002 ORTHO05D004433 8.3e-06 55.1 73 35.6


User provided reference genes

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